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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072983 ID=TCONS_00072983|Name=TCONS_00072983|organism=Clytia hemisphaerica|type=transcript|length=2569bpRun BLAST on NCBI protein sequence of DNA replication licensing factor >TCONS_00072983-protein ID=TCONS_00072983-protein|Name=DNA replication licensing factor|organism=Clytia hemisphaerica|type=polypeptide|length=774bp MPSQGTPKPSKKRNRSTTSPGSERSRRSSRLSSNLSEEQPSDPVEAPTKQRun BLAST on NCBI transcript from alignment at scaffold_86:1434056..1452166+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072983 ID=TCONS_00072983|Name=TCONS_00072983|organism=Clytia hemisphaerica|type=transcript|length=18111bp|location=Sequence derived from alignment at scaffold_86:1434056..1452166+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_86:1434056..1452166+ >TCONS_00072983 ID=TCONS_00072983|Name=TCONS_00072983|organism=Clytia hemisphaerica|type=CDS|length=44175bp|location=Sequence derived from alignment at scaffold_86:1434056..1452166+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00072983 vs. Swiss-Prot (Human)
Match: MCM4 (DNA replication licensing factor MCM4 OS=Homo sapiens GN=MCM4 PE=1 SV=5) HSP 1 Score: 969.533 bits (2505), Expect = 0.000e+0 Identity = 468/685 (68.32%), Postives = 559/685 (81.61%), Query Frame = 2
Query: 518 EIDLSSPLNYGTPASSRLGSMAVGTPRGTPVRLRSDIQSTRKLKQVNVGGGSEPTDNNDPVVSSEAPAEPKLVIWGTDVVVSETKERFRQFILNFKDDTVEE-----YDPDQALYMQKLDEISITEKPFFNVDCLHLKAYHAELYRQLVCYPQEVIPTFDMAVNEVFNENHENIELEHQIQVRTFNVDKTMNMRSLNPEDIDQMITISGMIIRTSNIIPEMRESFFQCHVCRATRTVEIDRGTINEPTSCANCNTQQSMMLVHNRSQFTDKQMIKMQESPDDMPAGQTPHTVIMYGYGDLVDSVQPGDRVTVTGIYRATPLRVNPRMRNVKSVYKTYIDVIHFRKTDKKKLHERDADS-QVAFTPERVEYLKELSAMPDIYERLARALAPSIYENIDIKKGILLQLFGGTFKDFTAAGRGKFRSDINILLCGDPGTSKSQLLQYVHNLVPRGQYTSGKGSSAVGLTAYVTRDPETNQLVLQTGALVLSDNGICCIDEFDKMSEGTRSVLHEVMEQQTLSIAKAGIICQLNARTSILAAANPQKSQWDPNLTTVENIQLPHTLLSRFDLIFLILDPQDEHFDRRLATHLVSLYHMSEQEADEEDVDMSTLRDYLAYAKNNVSPKLNDEASQTLISSYVEMRKAGSNRGAVSAYPRQLEALIRLAEAHARMRFSNVVDIVDVEEAKR 2554
+ D+SSPL YGTP+S G+ G RGTPVR R D+ S +K QV++ ++ +V+SE KLVIWGTDV V+ KE F++F+ F D +E D + LYMQ+L EI++ +PF NV+C H+K++ LYRQL+ YPQEVIPTFDMAVNE+F + + + LEHQIQVR FN KT NMR+LNPEDIDQ+ITISGM+IRTS +IPEM+E+FFQC VC T VE+DRG I EP+ C C+T SM L+HNRS F+DKQMIK+QESP+DMPAGQTPHTVI++ + DLVD VQPGDRV VTGIYRA P+RVNPR+ NVKSVYKT+IDVIH+RKTD K+LH D ++ Q F+ +RVE LKELS PDIYERLA ALAPSIYE+ DIKKGILLQLFGGT KDF+ GRGKFR++INILLCGDPGTSKSQLLQYV+NLVPRGQYTSGKGSSAVGLTAYV +DPET QLVLQTGALVLSDNGICCIDEFDKM+E TRSVLHEVMEQQTLSIAKAGIICQLNARTS+LAAANP +SQW+P TT+ENIQLPHTLLSRFDLIFL+LDPQDE +DRRLA HLV+LY+ SE++A+EE +DM+ L+DY+AYA + + P+L++EASQ LI +YV+MRK GS+RG VSAYPRQLE+LIRLAEAHA++R SN V+ +DVEEAKR
Sbjct: 83 DFDVSSPLTYGTPSSRVEGTPRSGV-RGTPVRQRPDLGSAQKGLQVDLQSDGAAAED---IVASEQSLGQKLVIWGTDVNVAACKENFQRFLQRFIDPLAKEEENVGIDITEPLYMQRLGEINVIGEPFLNVNCEHIKSFDKNLYRQLISYPQEVIPTFDMAVNEIFFDRYPDSILEHQIQVRPFNALKTKNMRNLNPEDIDQLITISGMVIRTSQLIPEMQEAFFQCQVCAHTTRVEMDRGRIAEPSVCGRCHTTHSMALIHNRSLFSDKQMIKLQESPEDMPAGQTPHTVILFAHNDLVDKVQPGDRVNVTGIYRAVPIRVNPRVSNVKSVYKTHIDVIHYRKTDAKRLHGLDEEAEQKLFSEKRVELLKELSRKPDIYERLASALAPSIYEHEDIKKGILLQLFGGTRKDFSHTGRGKFRAEINILLCGDPGTSKSQLLQYVYNLVPRGQYTSGKGSSAVGLTAYVMKDPETRQLVLQTGALVLSDNGICCIDEFDKMNESTRSVLHEVMEQQTLSIAKAGIICQLNARTSVLAAANPIESQWNPKKTTIENIQLPHTLLSRFDLIFLLLDPQDEAYDRRLAHHLVALYYQSEEQAEEELLDMAVLKDYIAYAHSTIMPRLSEEASQALIEAYVDMRKIGSSRGMVSAYPRQLESLIRLAEAHAKVRLSNKVEAIDVEEAKR 763 The following BLAST results are available for this feature:
BLAST of TCONS_00072983 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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