TCONS_00072982 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072982
Unique NameTCONS_00072982
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length961

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072982 ID=TCONS_00072982|Name=TCONS_00072982|organism=Clytia hemisphaerica|type=transcript|length=961bp
ATTTATTGCAAACACAAATTCTGGTGTATatttattaaaggttttgtttt
tgaatgagagtgatatcgtttgctcaCTCATCAATTATAtgtaattcaca
agctttttcacatcagattgacacggatgtggagccagattggtcagaaa
gaggaaaggaaaaccattttttgcttatataagcataatataacaatagg
tagacactgtaTTGATATgtaatatgtgtctgatatgaaacgagagcact
tatgtaaaaatgaaacctttaatattttctttttttaagatttaattGTC
GTTAAAGATGCCAGTTATTTCAAAACGTTTAGATGGGAAAGTTGCAATCG
TTACCGCCTCTACGGCTGGAATTGGTTATGCAATCGCAGAAGGGTTAGCA
GAAAATGGTGCAAAAGTTGTTATTAGTAGTCGTAAAGAGACAAATGTAGA
AAATACACTTCAACAATTAAGATCAAAAGGTTTGGAAGTTTCTGGTTGTG
TTTGCCATGTCGCAATAGCAGAGGATCGTCAGAAGCTTTTGGATTTGACA
TTGAAAAAATATGGCCAATTGGATATTTTGATTAACAACGCTGGGACGAG
TGTTGGAATGAAACCCTTTCTAGAGACAACTCCTGATGAATGGAATGAGA
TCTTTGCCACCAATCTTCAAGCAGGATTTCAATTTGTAAAAGAAGCATTA
CCTTACCTAAAGGAAACcaaGGGATCAGTGTTGTTCAATGGTTCAATGAC
AGCTTACAACCCTCTTCCgATGATGGGTGCGTATTCCATATCAAAGACAG
CCATGTTGGGTATGGTGAAAGCTCTGGCTTCTGAATGTGGACCAATGGGC
ATTCGTGTCAATTGCTTTGCTCCTGGTATTATTGAGACGAACATGAGTGA
ACCGGCAACGTCAAACAAGGAATTTTGTGAAACATGGACGAAAGCTATCC
CTTTGGGAAGG
Run BLAST on NCBI

protein sequence of TCONS_00072982-protein

>TCONS_00072982-protein ID=TCONS_00072982-protein|Name=TCONS_00072982-protein|organism=Clytia hemisphaerica|type=polypeptide|length=218bp
MPVISKRLDGKVAIVTASTAGIGYAIAEGLAENGAKVVISSRKETNVENT
LQQLRSKGLEVSGCVCHVAIAEDRQKLLDLTLKKYGQLDILINNAGTSVG
MKPFLETTPDEWNEIFATNLQAGFQFVKEALPYLKETKGSVLFNGSMTAY
NPLPMMGAYSISKTAMLGMVKALASECGPMGIRVNCFAPGIIETNMSEPA
TSNKEFCETWTKAIPLGR
Run BLAST on NCBI

transcript from alignment at scaffold_86:1415986..1422936+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072982 ID=TCONS_00072982|Name=TCONS_00072982|organism=Clytia hemisphaerica|type=transcript|length=6951bp|location=Sequence derived from alignment at scaffold_86:1415986..1422936+ (Clytia hemisphaerica)
ATTTATTGCAAACACAAATTCTGGTGTATatttattaaaggttttgtttt
tgaatgagagtgatatcgtttgctcaCTCATCAATTATAtgtaattcaca
agctttttcacatcagattgacacggatgtggagccagattggtcagaaa
gaggaaaggaaaaccattttttgcttatataagcataatataacaatagg
tagacactgtaTTGATATgtaatatgtgtctgatatgaaacgagagcact
tatgtaaaaatgaaacctttaatattttctttttttaagatttaattGTC
GTTAAAGATGCCAGTTATTTCAAAACGTTTAGATGGGAAAGTTGCAATCG
TTACCGCCTCTACGGCTGGGTATGCTTTTACTTTTTGGTTTCTGATTTAa
gtccaaaaaaagaaaaatagatctTTATTTTGAGACAAAGTTCCCATTTG
CTCGGGACGCAGGTCATCTAGGGGGCCCAGCGGTTTGCTTGAATGCgtta
atgggctttttcacttgtgtgaatgcgtgaattggaaagctttacGTGAA
cgaaaattgcgtgaattgcgacaaaagattgcgtgaatgcgtgaaattgg
GAAACaaatttgcgtgattgcgtgaattgaaggtccgctgggaGGAGGGC
TTCATCTAGACTGAGGTGAAAATACATGAGTAGAATGTGAAGCCGAGGAA
GGCACTCAGGCAACATTTTGTATGGGACGTGCCGCTGATCAgtgtccctt
ttttaggctcagAAGATATCTAACAatgtcccaaatttactaattttcaa
ggtGTGTATCTGACTGGGTCGACCATTGGTTATTTTTGACAACTTTCCAG
AAATGTGAAGTATGAGTCATTCAAATTGATATTTTAATGATCGactttct
tcatcttcatctttttCCACAGAATTGGTTATGCAATCGCAGAAGGGTTA
GCAGAAAATGGTGCAAAAGTTGTTATTAGTAGTCGTAAAGAGACAAATGT
AGAAAATACACTTCAACAATTAAGATCAAAAGGTTTGGAAGTTTCTGGTT
GTGTTTGCCATGTCGCAATAGCAGAGGATCGTCAGAAGCTTTTGGATTTG
GTATGAagatttttattgttatttgcaTTAAAAATATCCTTTTACTATCc
aactactcttaggttccaaataacccccccccccccttNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcccccccccccc
acttgtaaaatttaaagaattttttcagcttttaaaGAGAATGTCCCCTA
TTCTGCTCTAAATATCCttattttagcctatatttaccttattttggggt
tttcgtGATTACAATTTCCaacaacccccccggcaattaggtcgtttatt
gaaatttttacttATTGTTATTTATTTCTCATAGACATTGAAAAAATATG
GCCAATTGGATATTTTGATTAACAACGCTGGGACGAGTGTTGGAATGAAA
CCCTTTCTAGAGgtaataaacctttttttaaatctatctaAGAAACTAAA
ATGTTATGCTACTAAAAGTATCATTTATAACTGAGCCCTGAAAACCccaa
agtcttgaaaaagtaCATCCCGAGAATCGCATTAGGGGATATTTATGCGG
GCCGAGAAAGATGATTTTTGAGAATTATTTAAAAATCTGGTCTTTTAGCA
CTTTATACtgtggaaaaaaagaacaaaagattTGAATTTGGGGAGGGGAG
AAATTGAGgctaatttggcgaatttttgaGTTAATTTACCATATTCgcca
aataaaagaaataaattgcTGAAATTTCTCTTAATAGGTTATTTACACTT
TCATTTTCCCTTTTTCTAGACAACTCCTGATGAATGGAATGAGGTATtac
attctttttttcaaatttaccatTCTGTCAAATTTGACTCTTAAATCTTT
GAACAGTTTATTATAATCGTTTTATTCGTCCGTTTCTCTGTCGTTCCGAA
TCGTTTTAGTAACTCGCCCGTTCTCTTTTCTGTTATCTACTCCTATtatt
caattcatgatattcatatattcatgacgtaatactTCTACGGAAATGGT
ACCCAGTTTATACTAGAAGTGGCAGATTTAAAAAACCAGAATGTTTCTTT
GGaacatttcatcatgaatattgcGAATAATAGGTACTTCCACGGTTGAA
AGTAAtcgtcccagctggcacacaacgttttttcaacgtttttctaacat
gcgcaacgtccatataaccttagataaacgttgaaacaacgttgtgtgcc
agctggggtagGTGATTTGTTGGTCTGAAATGGTTGAGGTTTTTGTGTCT
AACCAACGAGCAGCCGTTATGTGTGCGCAATTGGtcatgattacccatga
ttcattggCACCATGAAATCATGAACTATAaactattttcttgttttgta
tTTTCCAGATCTTTGCCACCAATCTTCAAGCAGGATTTCAATTTGTAAAA
GAAGCATTACCTTACCTAAAGGAAACcaagtaaaatatatttttgtgtaa
tttttgCAGTCCACAGAGCCAAATTCTGGACTTttagattttaaaggaaa
taaTAAAAGTAAATTCGGTTCGTTTTCATGCAAAATCTGACGCTTTTAGC
TGTGATGTTTAATTACGACTTTATTATGGCTAAATTATGGCTTCTTCTCA
AAGTTTGTTCCTATAatctttgaaaaggaaaaatcatTGCTCCCTTCATA
AAAATGGTATCCAAAAACAGCTGTTTCGATAAGATGATATTACTTTTACT
TACTACATGATCTTGTCCTGGAAAAACTGTCCCTTTGGGACAATCAACCG
GTCACAGTTGCCAAAAGAATATCGGTTATTATCATAGGACTAAAAATTTG
GCACCTTTTCTTTCCAGGGGATCAGTGTTGTTCAATGGTTCAATGACAGC
TTACAACCCTCTTCCggtaacttttctattttttactctATAATACCGTT
GTTTTTAATAAGAATCCACTTCCCGCACTAAAGTTCCATTGTCACCTTTC
CAacggaaaaagaccaggactccTGGTAGTTAAAAATTAAGATTCGGAAT
GTTATACAGTTTCCTAAGTCAACACAATACCGGATACCCCGGGGAAAATA
GCGGAAATTTCCCGGTAAAGTGAATGGAATCTTAGTGCGGGAAGGAGTag
aatcttatgcaaaacgacgGTAATAATTAATAACTCTACAACCGCCCATT
ACTGGGCATGGTTGGACATAAAAGCAATGACTCTCGTCAGTGAGGCCTAA
TCACTTCTGAGAGCCATGACTCTATTTGGAGCTATTAAAACTTTTCATAA
GTTATTTTGAAGTGCAGTGACTGTCTCTtattgaaaccattaccaaagTG
ATTTAATCCCTAGAGCCAGCAAGTGTTACTAATTCaataagattttaaaa
aatcgTACCGCTAGAAAGGATTTCTTTCAGGGAAGAAACTTTAGCGAAGG
ATTTTCGaggaaatttttaaatcttgatGACTTGGcttcttcaaaaatca
agaacaaCCAACAATCGTACCACTAGCACCTATGCTAGCACCGTTCACAT
CAGTCGAAATCAACAAAGctgttaagaaaatgaaacgaaACAAAAAGCCC
AGGATGTGATGAAATACCAATTGAACTGATAAAATTTGCTCCCGAAACTA
TCCACCAACAGATAGCCAACATCTATAACAACATAGCCGAAGCAGGGAAC
ATACCGAAAGAGATCACGTACGGTATCCTTAAGCCCCTGCAAAAACCCAA
CAAAGCAAAAGGACCACCATCAAACTTACTACCAATCGTTCTACTTTCAT
CACTACAAAAAATCCTTGCAGCTTGCATTAACTACCGACTTGACGCAGAA
AAACCACTCTCTCAAGCAGCATACCGAGCAAACAGATCCACAACCGAGCA
CGTCTTCGCGGCAAAACTCGTAACTGAACGGACTATGTGAAGCCGTTCAC
TTAATACTTCTTGATATGAGCAAAGCGTTCGACAGTCTTAATAGAAACAA
ACTGCTGCATATGACTTGCAATCTACCATCTCACCAGACGAACTCCACAT
TATCGCAGTCCTCCTTAATGTATCGCTCAGTGTCAAATGCAATCAAACTC
TAAGCTCTGAGTTCGCAACTGACACCGGAGCACCACAAGGAGACTGTAAG
TGCTAACGAATTTACGTACTACCTAGCAAAAGCACTACACCCGGTGAAAA
ACCACCAAATACGCAACCATCCTGATGCACTTCCTAATGTACCATCCATT
CCTGCTGACCATCTAACAGACCACAATTACGCCATTGTCAcagaaaaaga
acaaatcgataTTGAAATGGAGTATGCTGACGATGTCGGGNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNGCGCACTGCAAAAGTTTAAGCAGACCGTTCCAA
CAGAACTAGAAAAACGAGATCTAGTAATAAATCAGGACAAAACGGAACAA
TTTACCATCACAAGAAATAACAACGAATAGAAAAAGTGCAAATATCTCGG
CAGTATGCGTGATACATCAGAAGAcattaaaagaagaaaaggaataTCGA
TTTCAGCTGCCAACAAATTACGAACGTTGTTCTGTCATAAAAAGTTGACT
ACACACACAAAAATGTCAGCATTCACGACCTACATCGAACTGATATTCCT
GTATAACTGCGAGCTGTGGAGTTCAACAACCTGTCAAGCCGAAAATTCCA
TTGATGCATTCCAAAGAAGATTGTTGCGAACTTTCGTGCTAAATGTGAGC
TGGCCAGAAATCGTGAAGAATGTCGAAGTGTATCAAAAGACCAACGCAGT
AAAgtgtagcctgggaatccaagctcctaatcttagaaaaaaacaaaaaa
tacctcacaaagttctaagattatggagcttggtgcaggtagataagtct
gacacagaatattataaacagtctgtgtgtgaacccttgttgacagactt
tctgaactttggaaacccaggcaaacacacataaccAACTTATCATAAAA
ACtgtttcacaagctctaaagactttcaaaactactaaaaaccatatcaa
aacatcagccacatgtatttagacacccagccaacagccattctgtttcg
aaatgaatgtatgttttcattttcatttgttttcctttttttctgcagag
tcagctttttctataaattatgcgcgcgcatcgaaattatcaaaatgcgc
gtgAAAGTACTGCCAAGTAATACgtcgaaagctggccaatcaggcggAAC
Ctacattgcagggaaaaatctccctgcaggcgagttacctgcgccaagcg
ttaaacaagcagcaaaaatatcataaactagactgtggacaaagtttaac
gcttggattcccaggctaagtAAAGTGGAGCAAACGTTTCAAAAGTAGAA
GACTGAAGTGGCTGGGAACTGTATTACGAGCAAATAGTTCAACACCTATG
AGAAAAGCACTCGAATATGCGAACACTAAGTACCAAAGACCGCGAGGGAA
ACCAACTACAACTTGGCTCAGTGTTGTCAAAAATGAtcttaaaacataaa
atattgaatGGGACGACGCAAtagaaattgcaaaaaacaCTAAGGATTGG
AACATTATCATAAATCGTTGATAGTTATACAACTTTTTTCAATTGCTTCT
TTTCGATAGTTATCGACAAAGCTGATAATGCTTCAATTCCTTTCGTCGGG
AGATATTTTATtatatgtttttattctttgtaccTACCGGTAATATAATC
GTTTTTTACGGAAAGACCgattgaatgaatgaatgacttAGCTAGAATTG
ACAATGAAAAAAGTTggagaaaaaagaatttgagaAATTATTATCATTGT
TTCCTTATGACATCGTTTTAAACACTCGCGCTGACACTTTTAAATATCTC
AGCATTTTTTTCTAGATGATGGGTGCGTATTCCATATCAAAGACAGCCAT
GTTGGGTATGGTGAAAGCTCTGGCTTCTGAATGTGGACCAATGGGCATTC
GTGTCAATTGCTTTGCTCCTGGTATTATTGAGACGAACATGAGTGAACCG
GTAATTCATCCAATGTATAGGCATACatacctcgttttgaaaccattact
aAGATGATTAAATCTCTCGAATCTTCAAGTGTTACTTTTTTGAATAGAGT
TGACTTCTTATGAACTCCTTTGGGAATCGATcgccatagcaatattttga
aagcgaggtaagcgttgctcgtgacgtaatttatgaaaaggtctatccaa
GCCAACCATTCCCCTATATAGTACGCACAGCTGCAGTACCGTCAACTAGC
CTGACAGTGCAAGTCTCAATGACAATCGTTGCCAATGGGGATCTCATGAA
GGAGTTAAATCAACAGGGACTAGATCGAAatctaaaattgtaatattcat
gatatgcaccactggagagtcttctaagaaattttccacccaatacgtca
cttgaaaacaaaataagtattgggtggaaaaaaaaaacagcaaagctgca
taatttcgtgaactCATTGCAGtcgtgcatatcatgaatattggATTTTG
TTTCAGCATATAGCTTTTTAGACTATATTAAGGGTCATTTTCCAAAggtg
ataaaaaatttttttttctcacctCAGGGGTTATTTTTGATCGACTCAGG
AACAGCTCAACTTTtctatttaaattttttcattattctaACGGTCCTCT
AAGCTGGAGCTTATCTTTGTTAAAATCGTTTCATCATGTTACAGGCAACG
TCAAACAAGGAATTTTGTGAAACATGGACGAAAGCTATCCCTTTGGGAAG
G

Coding sequence (CDS) from alignment at scaffold_86:1415986..1422936+

>TCONS_00072982 ID=TCONS_00072982|Name=TCONS_00072982|organism=Clytia hemisphaerica|type=CDS|length=5232bp|location=Sequence derived from alignment at scaffold_86:1415986..1422936+ (Clytia hemisphaerica)
ATGCCAGTTATTTCAAAACGTTTAGATGGGAAAGTTGCAATCGTTACCGC
CTCTACGGCTGGAATTGGTTATGCAATCGCAGAAGGGTTAGCAGAAAATG
GTGCAAAAGTTGTTATTAGTAGTCGTAAAGAGACAAATGTAGAAAATACA
CTTCAACAATTAAGATCAAAAGGTTTGGAAGTTTCTGGTTGTGTTTGCCA
TGTCGCAATAGCAGAGGATCGTCAGAAGCTTTTGGATTTGACATTGAAAA
AATATGGCCAATTGGATATTTTGATTAACAACGCTGGGACGAGTGTTGGA
ATGAAACCCTTTCTAGAGACAACTCCTGATGAATGGAATGAGATCTTTGC
CACCAATCTTCAAGCAGGATTTCAATTTGTAAAAGAAGCATTACCTTACC
TAAAGGAAACcaaGGGATCAGTGTTGTTCAATGGTTCAATGACAGCTTAC
AACCCTCTTCCgATGATGGGTGCGTATTCCATATCAAAGACAGCCATGTT
GGGTATGGTGAAAGCTCTGGCTTCTGAATGTGGACCAATGGGCATTCGTG
TCAATTGCTTTGCTCCTGGTATTATTGAGACGAACATGAGTGAACCGGCA
ACGTCAAACAAGGAATTTTGTGAAACATGGACGAAAGCTATCCCTTTGGG
AAGGATGCCAGTTATTTCAAAACGTTTAGATGGGAAAGTTGCAATCGTTA
CCGCCTCTACGGCTGGAATTGGTTATGCAATCGCAGAAGGGTTAGCAGAA
AATGGTGCAAAAGTTGTTATTAGTAGTCGTAAAGAGACAAATGTAGAAAA
TACACTTCAACAATTAAGATCAAAAGGTTTGGAAGTTTCTGGTTGTGTTT
GCCATGTCGCAATAGCAGAGGATCGTCAGAAGCTTTTGGATTTGACATTG
AAAAAATATGGCCAATTGGATATTTTGATTAACAACGCTGGGACGAGTGT
TGGAATGAAACCCTTTCTAGAGACAACTCCTGATGAATGGAATGAGATCT
TTGCCACCAATCTTCAAGCAGGATTTCAATTTGTAAAAGAAGCATTACCT
TACCTAAAGGAAACcaaGGGATCAGTGTTGTTCAATGGTTCAATGACAGC
TTACAACCCTCTTCCgATGATGGGTGCGTATTCCATATCAAAGACAGCCA
TGTTGGGTATGGTGAAAGCTCTGGCTTCTGAATGTGGACCAATGGGCATT
CGTGTCAATTGCTTTGCTCCTGGTATTATTGAGACGAACATGAGTGAACC
GGCAACGTCAAACAAGGAATTTTGTGAAACATGGACGAAAGCTATCCCTT
TGGGAAGGATGCCAGTTATTTCAAAACGTTTAGATGGGAAAGTTGCAATC
GTTACCGCCTCTACGGCTGGAATTGGTTATGCAATCGCAGAAGGGTTAGC
AGAAAATGGTGCAAAAGTTGTTATTAGTAGTCGTAAAGAGACAAATGTAG
AAAATACACTTCAACAATTAAGATCAAAAGGTTTGGAAGTTTCTGGTTGT
GTTTGCCATGTCGCAATAGCAGAGGATCGTCAGAAGCTTTTGGATTTGAC
ATTGAAAAAATATGGCCAATTGGATATTTTGATTAACAACGCTGGGACGA
GTGTTGGAATGAAACCCTTTCTAGAGACAACTCCTGATGAATGGAATGAG
ATCTTTGCCACCAATCTTCAAGCAGGATTTCAATTTGTAAAAGAAGCATT
ACCTTACCTAAAGGAAACcaaGGGATCAGTGTTGTTCAATGGTTCAATGA
CAGCTTACAACCCTCTTCCgATGATGGGTGCGTATTCCATATCAAAGACA
GCCATGTTGGGTATGGTGAAAGCTCTGGCTTCTGAATGTGGACCAATGGG
CATTCGTGTCAATTGCTTTGCTCCTGGTATTATTGAGACGAACATGAGTG
AACCGGCAACGTCAAACAAGGAATTTTGTGAAACATGGACGAAAGCTATC
CCTTTGGGAAGGATGCCAGTTATTTCAAAACGTTTAGATGGGAAAGTTGC
AATCGTTACCGCCTCTACGGCTGGAATTGGTTATGCAATCGCAGAAGGGT
TAGCAGAAAATGGTGCAAAAGTTGTTATTAGTAGTCGTAAAGAGACAAAT
GTAGAAAATACACTTCAACAATTAAGATCAAAAGGTTTGGAAGTTTCTGG
TTGTGTTTGCCATGTCGCAATAGCAGAGGATCGTCAGAAGCTTTTGGATT
TGACATTGAAAAAATATGGCCAATTGGATATTTTGATTAACAACGCTGGG
ACGAGTGTTGGAATGAAACCCTTTCTAGAGACAACTCCTGATGAATGGAA
TGAGATCTTTGCCACCAATCTTCAAGCAGGATTTCAATTTGTAAAAGAAG
CATTACCTTACCTAAAGGAAACcaaGGGATCAGTGTTGTTCAATGGTTCA
ATGACAGCTTACAACCCTCTTCCgATGATGGGTGCGTATTCCATATCAAA
GACAGCCATGTTGGGTATGGTGAAAGCTCTGGCTTCTGAATGTGGACCAA
TGGGCATTCGTGTCAATTGCTTTGCTCCTGGTATTATTGAGACGAACATG
AGTGAACCGGCAACGTCAAACAAGGAATTTTGTGAAACATGGACGAAAGC
TATCCCTTTGGGAAGGATGCCAGTTATTTCAAAACGTTTAGATGGGAAAG
TTGCAATCGTTACCGCCTCTACGGCTGGAATTGGTTATGCAATCGCAGAA
GGGTTAGCAGAAAATGGTGCAAAAGTTGTTATTAGTAGTCGTAAAGAGAC
AAATGTAGAAAATACACTTCAACAATTAAGATCAAAAGGTTTGGAAGTTT
CTGGTTGTGTTTGCCATGTCGCAATAGCAGAGGATCGTCAGAAGCTTTTG
GATTTGACATTGAAAAAATATGGCCAATTGGATATTTTGATTAACAACGC
TGGGACGAGTGTTGGAATGAAACCCTTTCTAGAGACAACTCCTGATGAAT
GGAATGAGATCTTTGCCACCAATCTTCAAGCAGGATTTCAATTTGTAAAA
GAAGCATTACCTTACCTAAAGGAAACcaaGGGATCAGTGTTGTTCAATGG
TTCAATGACAGCTTACAACCCTCTTCCgATGATGGGTGCGTATTCCATAT
CAAAGACAGCCATGTTGGGTATGGTGAAAGCTCTGGCTTCTGAATGTGGA
CCAATGGGCATTCGTGTCAATTGCTTTGCTCCTGGTATTATTGAGACGAA
CATGAGTGAACCGGCAACGTCAAACAAGGAATTTTGTGAAACATGGACGA
AAGCTATCCCTTTGGGAAGGATGCCAGTTATTTCAAAACGTTTAGATGGG
AAAGTTGCAATCGTTACCGCCTCTACGGCTGGAATTGGTTATGCAATCGC
AGAAGGGTTAGCAGAAAATGGTGCAAAAGTTGTTATTAGTAGTCGTAAAG
AGACAAATGTAGAAAATACACTTCAACAATTAAGATCAAAAGGTTTGGAA
GTTTCTGGTTGTGTTTGCCATGTCGCAATAGCAGAGGATCGTCAGAAGCT
TTTGGATTTGACATTGAAAAAATATGGCCAATTGGATATTTTGATTAACA
ACGCTGGGACGAGTGTTGGAATGAAACCCTTTCTAGAGACAACTCCTGAT
GAATGGAATGAGATCTTTGCCACCAATCTTCAAGCAGGATTTCAATTTGT
AAAAGAAGCATTACCTTACCTAAAGGAAACcaaGGGATCAGTGTTGTTCA
ATGGTTCAATGACAGCTTACAACCCTCTTCCgATGATGGGTGCGTATTCC
ATATCAAAGACAGCCATGTTGGGTATGGTGAAAGCTCTGGCTTCTGAATG
TGGACCAATGGGCATTCGTGTCAATTGCTTTGCTCCTGGTATTATTGAGA
CGAACATGAGTGAACCGGCAACGTCAAACAAGGAATTTTGTGAAACATGG
ACGAAAGCTATCCCTTTGGGAAGGATGCCAGTTATTTCAAAACGTTTAGA
TGGGAAAGTTGCAATCGTTACCGCCTCTACGGCTGGAATTGGTTATGCAA
TCGCAGAAGGGTTAGCAGAAAATGGTGCAAAAGTTGTTATTAGTAGTCGT
AAAGAGACAAATGTAGAAAATACACTTCAACAATTAAGATCAAAAGGTTT
GGAAGTTTCTGGTTGTGTTTGCCATGTCGCAATAGCAGAGGATCGTCAGA
AGCTTTTGGATTTGACATTGAAAAAATATGGCCAATTGGATATTTTGATT
AACAACGCTGGGACGAGTGTTGGAATGAAACCCTTTCTAGAGACAACTCC
TGATGAATGGAATGAGATCTTTGCCACCAATCTTCAAGCAGGATTTCAAT
TTGTAAAAGAAGCATTACCTTACCTAAAGGAAACcaaGGGATCAGTGTTG
TTCAATGGTTCAATGACAGCTTACAACCCTCTTCCgATGATGGGTGCGTA
TTCCATATCAAAGACAGCCATGTTGGGTATGGTGAAAGCTCTGGCTTCTG
AATGTGGACCAATGGGCATTCGTGTCAATTGCTTTGCTCCTGGTATTATT
GAGACGAACATGAGTGAACCGGCAACGTCAAACAAGGAATTTTGTGAAAC
ATGGACGAAAGCTATCCCTTTGGGAAGGATGCCAGTTATTTCAAAACGTT
TAGATGGGAAAGTTGCAATCGTTACCGCCTCTACGGCTGGAATTGGTTAT
GCAATCGCAGAAGGGTTAGCAGAAAATGGTGCAAAAGTTGTTATTAGTAG
TCGTAAAGAGACAAATGTAGAAAATACACTTCAACAATTAAGATCAAAAG
GTTTGGAAGTTTCTGGTTGTGTTTGCCATGTCGCAATAGCAGAGGATCGT
CAGAAGCTTTTGGATTTGACATTGAAAAAATATGGCCAATTGGATATTTT
GATTAACAACGCTGGGACGAGTGTTGGAATGAAACCCTTTCTAGAGACAA
CTCCTGATGAATGGAATGAGATCTTTGCCACCAATCTTCAAGCAGGATTT
CAATTTGTAAAAGAAGCATTACCTTACCTAAAGGAAACcaaGGGATCAGT
GTTGTTCAATGGTTCAATGACAGCTTACAACCCTCTTCCgATGATGGGTG
CGTATTCCATATCAAAGACAGCCATGTTGGGTATGGTGAAAGCTCTGGCT
TCTGAATGTGGACCAATGGGCATTCGTGTCAATTGCTTTGCTCCTGGTAT
TATTGAGACGAACATGAGTGAACCGGCAACGTCAAACAAGGAATTTTGTG
AAACATGGACGAAAGCTATCCCTTTGGGAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045265XLOC_045265Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072982-exon-scaffold_86-1491911889:1415986..1416354TCONS_00072982-exon-scaffold_86-1491911889:1415986..1416354Clytia hemisphaericaexon
TCONS_00072982-exon-scaffold_86-1510915933:1415986..1416354TCONS_00072982-exon-scaffold_86-1510915933:1415986..1416354Clytia hemisphaericaexon
TCONS_00072982-exon-scaffold_86-1575043694:1415986..1416354TCONS_00072982-exon-scaffold_86-1575043694:1415986..1416354Clytia hemisphaericaexon
TCONS_00072982-exon-scaffold_86-1491911889:1416908..1417085TCONS_00072982-exon-scaffold_86-1491911889:1416908..1417085Clytia hemisphaericaexon
TCONS_00072982-exon-scaffold_86-1510915933:1416908..1417085TCONS_00072982-exon-scaffold_86-1510915933:1416908..1417085Clytia hemisphaericaexon
TCONS_00072982-exon-scaffold_86-1575043694:1416908..1417085TCONS_00072982-exon-scaffold_86-1575043694:1416908..1417085Clytia hemisphaericaexon
TCONS_00072982-exon-scaffold_86-1491911889:1417470..1417547TCONS_00072982-exon-scaffold_86-1491911889:1417470..1417547Clytia hemisphaericaexon
TCONS_00072982-exon-scaffold_86-1510915933:1417470..1417547TCONS_00072982-exon-scaffold_86-1510915933:1417470..1417547Clytia hemisphaericaexon
TCONS_00072982-exon-scaffold_86-1575043694:1417470..1417547TCONS_00072982-exon-scaffold_86-1575043694:1417470..1417547Clytia hemisphaericaexon
TCONS_00072982-exon-scaffold_86-1491911889:1417905..1417928TCONS_00072982-exon-scaffold_86-1491911889:1417905..1417928Clytia hemisphaericaexon
TCONS_00072982-exon-scaffold_86-1510915933:1417905..1417928TCONS_00072982-exon-scaffold_86-1510915933:1417905..1417928Clytia hemisphaericaexon
TCONS_00072982-exon-scaffold_86-1575043694:1417905..1417928TCONS_00072982-exon-scaffold_86-1575043694:1417905..1417928Clytia hemisphaericaexon
TCONS_00072982-exon-scaffold_86-1491911889:1418494..1418564TCONS_00072982-exon-scaffold_86-1491911889:1418494..1418564Clytia hemisphaericaexon
TCONS_00072982-exon-scaffold_86-1510915933:1418494..1418564TCONS_00072982-exon-scaffold_86-1510915933:1418494..1418564Clytia hemisphaericaexon
TCONS_00072982-exon-scaffold_86-1575043694:1418494..1418564TCONS_00072982-exon-scaffold_86-1575043694:1418494..1418564Clytia hemisphaericaexon
TCONS_00072982-exon-scaffold_86-1491911889:1418953..1419001TCONS_00072982-exon-scaffold_86-1491911889:1418953..1419001Clytia hemisphaericaexon
TCONS_00072982-exon-scaffold_86-1510915933:1418953..1419001TCONS_00072982-exon-scaffold_86-1510915933:1418953..1419001Clytia hemisphaericaexon
TCONS_00072982-exon-scaffold_86-1575043694:1418953..1419001TCONS_00072982-exon-scaffold_86-1575043694:1418953..1419001Clytia hemisphaericaexon
TCONS_00072982-exon-scaffold_86-1491911889:1422051..1422185TCONS_00072982-exon-scaffold_86-1491911889:1422051..1422185Clytia hemisphaericaexon
TCONS_00072982-exon-scaffold_86-1510915933:1422051..1422185TCONS_00072982-exon-scaffold_86-1510915933:1422051..1422185Clytia hemisphaericaexon
TCONS_00072982-exon-scaffold_86-1575043694:1422051..1422185TCONS_00072982-exon-scaffold_86-1575043694:1422051..1422185Clytia hemisphaericaexon
TCONS_00072982-exon-scaffold_86-1491911889:1422880..1422936TCONS_00072982-exon-scaffold_86-1491911889:1422880..1422936Clytia hemisphaericaexon
TCONS_00072982-exon-scaffold_86-1510915933:1422880..1422936TCONS_00072982-exon-scaffold_86-1510915933:1422880..1422936Clytia hemisphaericaexon
TCONS_00072982-exon-scaffold_86-1575043694:1422880..1422936TCONS_00072982-exon-scaffold_86-1575043694:1422880..1422936Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072982-proteinTCONS_00072982-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:1415986..1422936 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.309	13.0203	13.84	10.8555	2.48126	1.86017	3.21469	3.17991	2.87658	2.0749	2.82005	2.22114	2.68068	1.93067	2.98448	3.02269	3.61141	3.56509	1.82325	2.61677	2.35429	2.36436	5.40296	4.84703	7.19269	5.24394	2.73635	2.97975	4.22285	4.58885
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002347SDR_fam
IPR020904Sc_DH/Rdtase_CS
IPR016040NAD(P)-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016491 oxidoreductase activity
Blast
[Close]
BLAST of TCONS_00072982 vs. Swiss-Prot (Human)
Match: DHRS2 (Dehydrogenase/reductase SDR family member 2, mitochondrial OS=Homo sapiens GN=DHRS2 PE=1 SV=4)

HSP 1 Score: 177.178 bits (448), Expect = 1.763e-52
Identity = 87/211 (41.23%), Postives = 137/211 (64.93%), Query Frame = 2 
Query:  329 LDGKVAIVTASTAGIGYAIAEGLAENGAKVVISSRKETNVENTLQQLRSKGLEVSGCVCHVAIAEDRQKLLDLTLKKYGQLDILINNAGTSVGMKPFLETTPDEWNEIFATNLQAGFQFVKEALPYLKETKGSVLFNGSMTAYNPLPMMGAYSISKTAMLGMVKALASECGPMGIRVNCFAPGIIETNMSEPATSNKEFCETWTKAIPLGR 961
            L  +VA+VT ST+GIG+AIA  LA +GA VVISSRK+ NV+  + +L+ +GL V+G VCHV  AEDR++L+   L+  G +D L+ +AG +  +   L T+   W++I + N+++    + + LPY++  +G+V+   S+ AYNP+  +G Y++SKTA+LG+ + LA E  P  IRVNC  PGII+T+ S+    N+   + + +   L R
Sbjct:   34 LANRVAVVTGSTSGIGFAIARRLARDGAHVVISSRKQQNVDRAMAKLQGEGLSVAGIVCHVGKAEDREQLVAKALEHCGGVDFLVCSAGVNPLVGSTLGTSEQIWDKILSVNVKSPALLLSQLLPYMENRRGAVILVSSIAAYNPVVALGVYNVSKTALLGLTRTLALELAPKDIRVNCVVPGIIKTDFSKVFHGNESLWKNFKEHHQLQR 244
The following BLAST results are available for this feature:
BLAST of TCONS_00072982 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DHRS21.763e-5241.23Dehydrogenase/reductase SDR family member 2, mitoc... [more]
back to top