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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072941 ID=TCONS_00072941|Name=TCONS_00072941|organism=Clytia hemisphaerica|type=transcript|length=2361bpRun BLAST on NCBI protein sequence of TCONS_00072941-protein >TCONS_00072941-protein ID=TCONS_00072941-protein|Name=TCONS_00072941-protein|organism=Clytia hemisphaerica|type=polypeptide|length=565bp SHVYLPAIFVEMNRLEWYHYVNYTLFTLLMSTKYILVVADGDHPTVTSSNRun BLAST on NCBI transcript from alignment at scaffold_86:1079722..1086507+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072941 ID=TCONS_00072941|Name=TCONS_00072941|organism=Clytia hemisphaerica|type=transcript|length=6786bp|location=Sequence derived from alignment at scaffold_86:1079722..1086507+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_86:1079722..1086507+ >TCONS_00072941 ID=TCONS_00072941|Name=TCONS_00072941|organism=Clytia hemisphaerica|type=CDS|length=15282bp|location=Sequence derived from alignment at scaffold_86:1079722..1086507+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00072941 vs. Swiss-Prot (Human)
Match: GLRA3 (Glycine receptor subunit alpha-3 OS=Homo sapiens GN=GLRA3 PE=1 SV=2) HSP 1 Score: 167.933 bits (424), Expect = 1.100e-44 Identity = 100/317 (31.55%), Postives = 169/317 (53.31%), Query Frame = 2
Query: 287 GYEGRESGVHDGPQRINLT--VWVESIVNIDVSAMEYVVHGYVIQEWVDARLNGSL--DHPILLSGEEGRAIWLPDLFCLSCRSSTLNSPTNGNVLIKVYPNGSIYYSQLAKLHGSCFMKLHYFPFDNQICPLNLSSYGYSNEYLVYEWKS---TPVVEKMQLEQFIVNENVLPHNEIKSYPAGDFNILSFELFFTRQIGFYVLQVFIPSIVLVSLSWMTFYMEPADVGDRLSIGVTLILTMIFLLGYINQSLPKVSYIKAVDWYVIASLFMIVASVIESVLVYWL---------LHRKQKKQKEQNSFERFDRYLD 1189
GY+ R GP +N+T +++ S +I + M+Y V+ ++ Q+W D RL S D + L +IW PDLF + + + + T N L++++ NG++ YS L SC M L FP D Q C + L S+GY+ L++EW+ V E + L QF++ E K Y G F + RQ+G+Y++Q++IPS+++V LSW++F++ R+++G+T +LTM SLPKVSY+KA+D ++ L + ++++E V ++ RK+K + E + E+F R+ D
Sbjct: 56 GYDARIRPNFKGPP-VNVTCNIFINSFGSIAETTMDYRVNIFLRQKWNDPRLAYSEYPDDSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLTLSCPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQDEAPVQVAEGLTLPQFLLKEEKDLRYCTKHYNTGKFTCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQHKELLRFRRKRKNKTEAFALEKFYRFSD 371 The following BLAST results are available for this feature:
BLAST of TCONS_00072941 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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