TCONS_00072941-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00072941-protein
Unique Name	TCONS_00072941-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	565

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00072941-protein ID=TCONS_00072941-protein|Name=TCONS_00072941-protein|organism=Clytia hemisphaerica|type=polypeptide|length=565bp
SHVYLPAIFVEMNRLEWYHYVNYTLFTLLMSTKYILVVADGDHPTVTSSN
NGLNTSQILLNTSMAVNSTNETNSYSSNNTFHEGHKKMKKKFPPEGYEGR
ESGVHDGPQRINLTVWVESIVNIDVSAMEYVVHGYVIQEWVDARLNGSLD
HPILLSGEEGRAIWLPDLFCLSCRSSTLNSPTNGNVLIKVYPNGSIYYSQ
LAKLHGSCFMKLHYFPFDNQICPLNLSSYGYSNEYLVYEWKSTPVVEKMQ
LEQFIVNENVLPHNEIKSYPAGDFNILSFELFFTRQIGFYVLQVFIPSIV
LVSLSWMTFYMEPADVGDRLSIGVTLILTMIFLLGYINQSLPKVSYIKAV
DWYVIASLFMIVASVIESVLVYWLLHRKQKKQKEQNSFERFDRYLDKKFN
MNNSFLPLPLLQGGAQAAGISMPNLPSLGNNQKPFYPRMTSLQELNEKPK
PNGINPKKPIFAKLEEDEDIDESDKNGETNFCSEKDPLTKPVIRNRVNSK
FNYHRDSLMEQREKKKSDESEESESKQYNPNLDKISKLDIFARTVFPLFY
VIFTLAYFIYFFGTK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_045252	XLOC_045252	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00072941	TCONS_00072941	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006028	GABAA/Glycine_rcpt
IPR006201	Neur_channel
IPR006202	Neur_chan_lig-bd
IPR006029	Neurotrans-gated_channel_TM
IPR018000	Neurotransmitter_ion_chnl_CS

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0006811	ion transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0005216	ion channel activity
GO:0005230	extracellular ligand-gated ion channel activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006811	ion transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005230	extracellular ligand-gated ion channel activity
molecular_function	GO:0005216	ion channel activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006028	Gamma-aminobutyric acid A receptor/Glycine receptor alpha	PRINTS	PR00253	GABAARECEPTR	coord: 541..561 score: 32.57 coord: 350..371 score: 22.81 coord: 290..310 score: 40.54 coord: 316..337 score: 34.31
IPR006201	Neurotransmitter-gated ion-channel	PRINTS	PR00252	NRIONCHANNEL	coord: 281..293 score: 30.53 coord: 131..147 score: 28.64 coord: 162..173 score: 36.2 coord: 208..222 score: 49.8
IPR006202	Neurotransmitter-gated ion-channel ligand-binding domain	GENE3D	2.70.170.10		coord: 55..294 e-value: 6.5E-37 score: 126.6
IPR006202	Neurotransmitter-gated ion-channel ligand-binding domain	PFAM	PF02931	Neur_chan_LBD	coord: 99..285 e-value: 3.5E-29 score: 101.7
IPR006202	Neurotransmitter-gated ion-channel ligand-binding domain	SUPERFAMILY	63712	Nicotinic receptor ligand binding domain-like	coord: 105..286
IPR006029	Neurotransmitter-gated ion-channel transmembrane domain	PFAM	PF02932	Neur_chan_memb	coord: 295..558 e-value: 1.9E-25 score: 90.2
IPR006029	Neurotransmitter-gated ion-channel transmembrane domain	SUPERFAMILY	90112	Neurotransmitter-gated ion-channel transmembrane pore	coord: 288..403 coord: 487..562
None	No IPR available	GENE3D	1.20.58.390		coord: 295..564 e-value: 1.2E-44 score: 151.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 467..486
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 504..527
IPR018000	Neurotransmitter-gated ion-channel, conserved site	PROSITE	PS00236	NEUROTR_ION_CHANNEL	coord: 208..222

Blast

[Close]

BLAST of TCONS_00072941-protein vs. Swiss-Prot (Human)
Match: GLRA3 (Glycine receptor subunit alpha-3 OS=Homo sapiens GN=GLRA3 PE=1 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 3.215e-46
Identity = 107/354 (30.23%), Postives = 184/354 (51.98%), Query Frame = 0

Query:   59 LLNTSMAVNSTNETNSYSSNNTFHEGHKKMKKKFPPEGYEGRESGVHDGPQRINLT--VWVESIVNIDVSAMEYVVHGYVIQEWVDARLNGSL--DHPILLSGEEGRAIWLPDLFCLSCRSSTLNSPTNGNVLIKVYPNGSIYYSQLAKLHGSCFMKLHYFPFDNQICPLNLSSYGYSNEYLVYEWKS---TPVVEKMQLEQFIVNENVLPHNEIKSYPAGDFNILSFELFFTRQIGFYVLQVFIPSIVLVSLSWMTFYMEPADVGDRLSIGVTLILTMIFLLGYINQSLPKVSYIKAVDWYVIASLFMIVASVIESVLVYWL---------LHRKQKKQKEQNSFERFDRYLD 396
            LL + +A   T+   S S+  +  +   K+  +    GY+ R      GP  +N+T  +++ S  +I  + M+Y V+ ++ Q+W D RL  S   D  + L      +IW PDLF  + + +  +  T  N L++++ NG++ YS    L  SC M L  FP D Q C + L S+GY+   L++EW+      V E + L QF++ E        K Y  G F  +       RQ+G+Y++Q++IPS+++V LSW++F++       R+++G+T +LTM         SLPKVSY+KA+D ++   L  + ++++E   V ++           RK+K + E  + E+F R+ D
Sbjct:   21 LLLSLVATKETDSARSRSAPMSPSDFLDKLMGR--TSGYDARIRPNFKGPP-VNVTCNIFINSFGSIAETTMDYRVNIFLRQKWNDPRLAYSEYPDDSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLTLSCPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQDEAPVQVAEGLTLPQFLLKEEKDLRYCTKHYNTGKFTCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQHKELLRFRRKRKNKTEAFALEKFYRFSD 371

The following BLAST results are available for this feature:

BLAST of TCONS_00072941-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00072941-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GLRA3	3.215e-46	30.23	Glycine receptor subunit alpha-3 OS=Homo sapiens G...	[more]

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TCONS_00072941-protein (polypeptide) - C. hemisphaerica