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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072931 ID=TCONS_00072931|Name=TCONS_00072931|organism=Clytia hemisphaerica|type=transcript|length=1167bp
caaccccgaccgaaagtgactgttcCACCCCTagagattcattcctcttt
gattgtcacgggaattaactgctTGTGGTTGAAAAGAAcggcaaattacg
catgcgtattagtgtctatttgggtgagctggaaacattacatGAACTAA
CTCTTGTGATGTATTCAAAATAGTATGCACTTTTTCACCCGTTTCGCGCG
AACGAAACTCAACAACGAACCATCGAGTAGGGTagtatttttcacaaatt
ttggaaatatcaatctGTTCCAGTTCTGGTCAAACATCGAGAGCAGACCA
AGCAATTTGAATGAAAGaTGGTTGGAGTATTAAAACTTATGCACATTGCT
TACACTGTTACTGATGCTGATCTCAAAGGCCTCTTCAAGACACATGCAAT
TTATCCTGAAGATGTCCATTGGCTGACAAATAAGCATGGTAAGAAAACAG
GAACTGCTTTTATTGCTTTTCAAAAGGAAGATCTTAAGAAAGCCCAAGAA
TTGGATGGTATTTACTTTCGTGGACACAAAATGAATATTCATGCAAGCAG
TGCTCATGAATTTAATTCTCACTTCCCAAACACACCAATGACTAAGAATA
TTGGACAAGAATGGAAATTGTATGGTCGCCCTAAGGAGGGAGATTTGAAG
TTCGAATCAGAACACTACGAAACTAGAAAGATTAACAGAGGAGGTGCTAC
TGGTTATGATCAATATTACGAAAGTAATTTCAAGGCTGAATCATCTTATC
CTTACACTACCCAATCCCGTTTTGAAGAAAGAGGTGCTTACTCTGCCAAA
GCAGAATATCAAGATTATGCTGCGTCCTATAACACTTACCAAAATGAAGC
TCTCCCAAAAAGAGATGTTGCTTTTCAAAAAGACATGCATTTCCAGAGGA
AAGATATGCAATATCCAACTGGCAATTATCAGCAATATGCAAAAATGGAA
AGCTTCCCTACAAAACATTTTGTAGATACTGAAATATCTAAAACTACGTA
CGCTTATCCTCCAAAGAAAGATACCTCAAATAGAAGGGAGCCAAACAAAA
AAAGGGATTTGTCAAAGTCCCACAGCAAGAAAGATGAGGACAAACGTCAT
CGCCACAGGTCAAGATCGCCTACTTCAAGAAGCAAATATTCCCaatcaaa
atcttcttcttcAAGCA Run BLAST on NCBI protein sequence of TCONS_00072931-protein >TCONS_00072931-protein ID=TCONS_00072931-protein|Name=TCONS_00072931-protein|organism=Clytia hemisphaerica|type=polypeptide|length=283bp
MVGVLKLMHIAYTVTDADLKGLFKTHAIYPEDVHWLTNKHGKKTGTAFIA
FQKEDLKKAQELDGIYFRGHKMNIHASSAHEFNSHFPNTPMTKNIGQEWK
LYGRPKEGDLKFESEHYETRKINRGGATGYDQYYESNFKAESSYPYTTQS
RFEERGAYSAKAEYQDYAASYNTYQNEALPKRDVAFQKDMHFQRKDMQYP
TGNYQQYAKMESFPTKHFVDTEISKTTYAYPPKKDTSNRREPNKKRDLSK
SHSKKDEDKRHRHRSRSPTSRSKYSQSKSSSSS Run BLAST on NCBI transcript from alignment at scaffold_86:956928..963769+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072931 ID=TCONS_00072931|Name=TCONS_00072931|organism=Clytia hemisphaerica|type=transcript|length=6842bp|location=Sequence derived from alignment at scaffold_86:956928..963769+ (Clytia hemisphaerica)
caaccccgaccgaaagtgactgttcCACCCCTagagattcattcctcttt
gattgtcacgggaattaactgctTGTGGTTGAAAAGAAcggcaaattacg
catgcgtattagtgtctatttgggtgagctggaaacattacatGAACTAA
CTCTTGTGATGTATTCAAAATAGTATGCACTTTTTCACCCGTTTCGCGCG
AACGAAACTCAACAACGAACCATCGAGTAGGGTagtatttttcacaaatt
ttggaaatatcaatctGTTCCAGTTCTGGTCAAACATCGAGAGCAGACCA
AGCAATTTGAATGAAAGGTATCAATCTTACTCTATCCTATGCTTTTCCCT
TTTTTACAATCAAATCCCCAAAGCTAGAATGTTTAGCTATTATTTGTATT
ATAAAGGCCATCAATAATGAAATTGGACcagcaattttattttattttaa
acaatataTTTCGAATACTTGTGATTCATCTTCAGgttctaaaatataaa
atagtaaaacagttaaaaccatttagtaaaaatatatattttccataACA
CGCATACATACAACCTACTCTGATCAAANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACCTACTC
TGATCAAAGAACTAATGtaactaaaaaatcaaaatcaaaattcactAAAT
CAAAAGTGAATTCCACTACAAATTCCCCTAAGGCAATAAAATCTATTAAA
TCTTTATTGTAAGGGTTCTACTTTTGTATTCATCTTTGGTATTCAGTTTT
GGTTTTACTTTATTAATCCACAGTGCCTCAAGGGACATTACGACCCTgtc
tatgccccggacagtccggggtttttttgatgcgtgcccggggtccgtat
tatttgtttttgagagactaccccggacgccccagacagcccgcgcggtc
gctttttatagaatcgctgaccgcgcgggcttttttctaacatttgcccc
ggactgtccggggcataggcagggtcgtggGACATTAAGCNCTTTGGTAT
TCAGTTTTGGTTTTACTTTATTAATCCACAGTGCCTCAAGGGACATTAAG
CATTGTTCAGATTTAATTGTGCGATCTAGAATCATTAcattttccatcaa
aatttcacaattacaattttgaaaatggctTCCCACTGGAGTGTTTACGT
TGCGGTGCTCTTTGATCCTGGTAATTAAGTGCCTGGCAGTCTGCCGGTCA
TAGCTCGATTCACATCGAGAACATTTAATTTGATACACTACCATGCTCTT
AAAGAGCTCCGTTTCAACTTTTGNGGTAATTAAGTACCTGGCAGTCTGCC
CGACATAGCTCGATTCACATCGAGAACATTTAATTTGATACACTACCATG
CTCTTGAGCTCCGTTTCAACTTTTGCTTTTAAAGAAGGAAGAACGTGTTT
agtcattttcagttttttgactattttgcaCGGGGCATTaatctttttca
aagatttttcgaaCTTTTCAGTAACGTTAACTCGATATTATAAGGCCGGC
AGTGGCAGTTAGCAGTTGGCAGTGATTTCTAGGTATATATATCTATTAAG
CCAATAACTAATTACTACAGCATAAACTAACATTTAGTAAAATTTGCCTT
TCGCCTTTAAAAGACAGTTGTTGTTGAGAGACATAAATATTACCGTTAAT
AATTCATCNGTTTAGCTAATAAGGCCGGCAGTGGCATTATTAGCGTTAAT
AATTCATCCCGTGCCGTTTTGTACTGCCTGCTGGATTGGAGGGAGGGCAT
AAATAAAGGAGTTTTTATATGGCTACGCTATACTGTATCGTAAGTCTGAG
acagtaagttggtctaatgtgttgacatccctcttctaattacGACACCC
TCTTCTAATtacgacacccttctttagaccagacccgatcaatcgaactt
gtcgaactaatcgaacaatcgaactaatcgaactccatcgaatgattaaa
gtttgattaaataaattaattgaactctaagattttttaaaagattgtga
gtgttcgattaagttcgatcaaatgggtttcggttcgatcagttcgNtaa
aagattgtgagtgttcgattaagttcgatcaatgggtttcggttcgatca
gttcgataaaccaattttgttcgacaagtttgtgctgcttcgccaccgta
tattagcttcttttcaaagccaaattcggaatgtaaatcgggaaattact
tccgataacggattacaaACTTTttctgtatccttttagcgccagaagAA
GCTGTTTGTTGGGGcgggcgtagtattccgccactcggccgcgcgCGAAA
TCGCAACCAGGGGCTACAGACTTttttccggatagacaaatattcgggta
caataaacatcaagctgttaagtccgggaactgtcgaaattggcaatcgc
ttgccaggacaaagtttttacaagcgagggaagatatgaggattttaata
tcatcgaactaatcgaactgctgctgcttcaaaaattgtgagtgttcgat
taggttcgattaatttttttaatcgaactttaatcgttcgatggagttca
attagttcgattgttcgattggtttgacaaATTCGATTGATCAGGTCTGG
TTTAGAGATGGGAATAACTGATAAAAActcattttctttgcttttagAGA
TCAGGCACTTTACTGGTATAGCCCTAACTGTTCATCATAAAAGCTACCAC
GGGAAACATTGGATTTTTACCCAATCTGCCAATGCCCCACGACCACGCAA
GCATTTAAGCTAAAGTCCCGCAAGACAAGTCCAgtgacaaaaatcagttt
tttgaagtttgcaaaaaacgccacatagaagatctttcaaattcagttaT
GTGAATAGAGtagtaaaaaaaacaacttttccagttccagaaatgaaaat
aaagggaatagctaatgataattgaatactatccaatgATGATCTGCAGC
ACTATCATAAAGCTAGAATCACTTTGCgtctcttcgcttgagaaaatgat
tgacagatttaAGTTTTGGGCGTTCTGTGAGTGTTCTCAGCTCAATCCTT
TGACAGCGCGCTAAAATGATAGACTTAGCTGCtgcagatcatttcgatgg
aagttgtcggaatgtttacaaggctcttgacagaaaattgtttgtttgat
tgtcaatgatgacagtgccgttattaattttgttaaatcTAACAAATTGA
CATGCTAGCTCTAAAGCTtcaaaacagcatctaataacatgaaaaccaga
atatgattcttcaatgggaatcaaaactataaagtgcacttacaaacatc
aatttgtcagatctaacaaaattaataaccgcactgtcatcattgacaat
aaaacaaacaattttctgtcaagacagctaggctggaacttcgatttttg
aggattatgactttaccagctttttaacgatttttgcctcgctaacccaa
atctcgcaacctctttaccttaaggaaagatcgaaattagagtttttcag
cgttccgagaAAAACGCATACTGTAGCAgaaaatttttcatcttcacagg
atcgattgtcaacaacaaaatacatcttttggtctttgggtttgtttctg
acgtttttccttcaaagaatatcgatcactttccttttccccttcagcgc
gcgagaaaaaaatgattagctcgcgttCTCAAGCGGGCGAATAAAAATGA
GGCGTGCTATTAtggcactgagggtgctacttagtttccgccctattttg
cgcccacgatagaatggtccaaatacgggggtattccaaatgataaactg
tGTCGAATGTCGAAAAATCATATTCTGGtattcatgttattagatgcggt
tttagagctttagagctacctGTCAGGGAGGAAACTTATCAGTGTTTTCC
GAAACTTCTTATATTCCTATCTCTAGAAGGgtatcgaaattagaagaggg
atatgtcaacattagaccaacttacggtagtaaCTTTGTGTAATGCATAG
TCTGGTACATTGTTCaggaactgggcactagtactGCTCGCTTcgcaaag
ttttttgaaaagaagatcgcctcaaacaataaaaatcaaaacaaagatga
agaGTGTGGTAAAAGTTAAAAGTTGTCTAGAATtgattgaaaaggatttt
caaaaaattaaacctaagtggaaaaattttagtttaaaaaaattttggtc
cctctaactgggcaggggactctaccTAATTCCGTCATAGAAACTATCTG
GTCTGCAAATTAGTAAGAGTAGTTTTTTTTAACAGCTTACTcagaaaatt
ttctttattaGCAATTAAAAGACAAAATATTTGCTATCACGGAATTAGAA
ATTCCTGCTTCCTGTAACTCAATTTCAAATctatatttttcaaggaaaac
catattcgtatttttcaaggaaaaccATATATTCGTATTATTCAAGGAAA
ACCTTATTCGTACTTTTCAAGGATAACCATATTCGTATTATTCAAGGAAG
GAAAACCATAttcgtatttttcaaggaaaaccatatttgtatttttcaaa
gaaaaccaTATTCGTATTTTTCAAGATCACTATTGATTTTCTTAGGATAG
TCTTTTatattttccatgaaaattcacttttatttttaaaggaaaatcat
tttcttctctcctgggtatttttcaatttaaaaaactttctttgtctATA
TGATATTCCCGAAAGTGATAGAtgcaaaaagtttttaagattgaaaAATA
GCCACAAGAGAAAAACATGATTTTCATTTAAGAATAATAGTGATTTTCCA
tggaaaatataaaagtttatgctatgaaaatattaaagaatACGCTAAAT
ATATGAGTGATCTTCCTTGAATATTATGAGAATAGTTTCCTTTGGAAAAT
AAGGATGTGATTTTCCTTAGAAATTTTAAGAATAACTTCCCTTTGGAAAA
TTAGATgattttccttgaagaatacaatgattttccttgaggaatacaga
tgactttccttgaaaaatacagatgtgatttccttaaaaaaagtttttNA
TGAGAATAGTTTCCCTTGGAAAATACGGATGTGATTTTCCTTAGAAATTT
TAAGAATAACTTCCCTTTGGAAAATTAGATgattttccttgaagaataca
atgattttccttgaggaatacagatgactttccttgaaaaatacagatgt
gatttccttaaaaaaagtttttccaaaaatccaAATTAGAGCCACCATTG
TAACTGTCATGGTGTTTCAGTGTCAAACATATTAAAAGTCTTGActttaa
cttgaattaattGAATCTTTTGAAGCCACTAAATTGAAAATACACATaag
accaatttgattacttGTTCTACGGGCCCAACCCACTTTGatattccaaa
aatcaaaatcaaaataaaattgattttggtagtacattttcaatttcatt
gcttatagactgccaaatttttaaaactttggtagtttttgcaatgtttt
gagaattttatgttaaATTTTCCACTTTATCCATGGATTCgacctttttg
tgtctttttattttctatttcgcatttttgtcgAGAGGAAGTAGTTGTTG
CTGCCTTTTTAGtagattttataggtgaaattctacttgtACTTTTATAT
TTTCCGGACCGACTGACCCTCTTCTATGGATAGCTTgacccgtaaaacaa
caaattaaattggcctcgcctaagATGAAATAATGAACTCAAACCATATT
GTCATGNGGATAGCTTgacccgtaaaacaacaaattaaattggcctcgcc
taagATGAAATAATCAACTCAAACCATATTGTCATGTCAAGTTACAGTAA
CAGTTACAATTCCCACTAAAgatcttttattttcacttttagaTGGTTGG
AGTATTAAAACTTATGCACATTGCTTACACTGTTACTGATGCTGATCTCA
AAGGCCTCTTCAAGACACATGCAATTTATCCTGAAGATGTCCATTGGCTG
ACAAATAAGCATGGTAAGAAAACAGGAACTGCTTTTATTGCTTTTCAAAA
GGAAGATCTTAAGAAAGCCCAAGAATTGGATGGTATTTACTTTCGTGGAC
ACAAAATGAATATTCATGCAAGCAGTGCTCATGAATTTAATTCTCACTTC
CCAAACACACCAATGACTAAGAATATTGGACAAGAATGGAAATTGTATGG
TCGCCCTAAGGAGGGAGATTTGAAGTTCGAATCAGAACACTACGAAACTA
GAAAGATTAACAGAGGAGGTGCTACTGGTTATGATCAATATTACGAAAGT
AATTTCAAGGCTGAATCATCTTATCCTTACACTACCCAATCCCGTTTTGA
AGAAAGAGGTGCTTACTCTGCCAAAGCAGAATATCAAGATTATGCTGCGT
CCTATAACACTTACCAAAATGAAGCTCTCCCAAAAAGAGATGTTGCTTTT
CAAAAAGACATGCATTTCCAGAGGAAAGATATGCAATATCCAACTGGCAA
TTATCAGCAATATGCAAAAATGGAAAGCTTCCCTACAAAACATTTTGTAG
ATACTGAAATATCTAAAACTACGTACGCTTATCCTCCAAAGAAAGATACC
TCAAATAGAAGGGAGCCAAACAAAAAAAGGGATTTGTCAAAGTCCCACAG
CAAGAAAGATGAGGACAAACGTCATCGCCACAGGTCAAGATCGCCTACTT
CAAGAAGCAAATATTCCCaatcaaaatcttcttcttcAAGCA Coding sequence (CDS) from alignment at scaffold_86:956928..963769+ >TCONS_00072931 ID=TCONS_00072931|Name=TCONS_00072931|organism=Clytia hemisphaerica|type=CDS|length=849bp|location=Sequence derived from alignment at scaffold_86:956928..963769+ (Clytia hemisphaerica)
aTGGTTGGAGTATTAAAACTTATGCACATTGCTTACACTGTTACTGATGC
TGATCTCAAAGGCCTCTTCAAGACACATGCAATTTATCCTGAAGATGTCC
ATTGGCTGACAAATAAGCATGGTAAGAAAACAGGAACTGCTTTTATTGCT
TTTCAAAAGGAAGATCTTAAGAAAGCCCAAGAATTGGATGGTATTTACTT
TCGTGGACACAAAATGAATATTCATGCAAGCAGTGCTCATGAATTTAATT
CTCACTTCCCAAACACACCAATGACTAAGAATATTGGACAAGAATGGAAA
TTGTATGGTCGCCCTAAGGAGGGAGATTTGAAGTTCGAATCAGAACACTA
CGAAACTAGAAAGATTAACAGAGGAGGTGCTACTGGTTATGATCAATATT
ACGAAAGTAATTTCAAGGCTGAATCATCTTATCCTTACACTACCCAATCC
CGTTTTGAAGAAAGAGGTGCTTACTCTGCCAAAGCAGAATATCAAGATTA
TGCTGCGTCCTATAACACTTACCAAAATGAAGCTCTCCCAAAAAGAGATG
TTGCTTTTCAAAAAGACATGCATTTCCAGAGGAAAGATATGCAATATCCA
ACTGGCAATTATCAGCAATATGCAAAAATGGAAAGCTTCCCTACAAAACA
TTTTGTAGATACTGAAATATCTAAAACTACGTACGCTTATCCTCCAAAGA
AAGATACCTCAAATAGAAGGGAGCCAAACAAAAAAAGGGATTTGTCAAAG
TCCCACAGCAAGAAAGATGAGGACAAACGTCATCGCCACAGGTCAAGATC
GCCTACTTCAAGAAGCAAATATTCCCaatcaaaatcttcttcttcAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072931-exon-scaffold_86-1491911889:956928..957244 | TCONS_00072931-exon-scaffold_86-1491911889:956928..957244 | Clytia hemisphaerica | exon |
| TCONS_00072931-exon-scaffold_86-1510915933:956928..957244 | TCONS_00072931-exon-scaffold_86-1510915933:956928..957244 | Clytia hemisphaerica | exon |
| TCONS_00072931-exon-scaffold_86-1575043694:956928..957244 | TCONS_00072931-exon-scaffold_86-1575043694:956928..957244 | Clytia hemisphaerica | exon |
| TCONS_00072931-exon-scaffold_86-1491911889:962920..963769 | TCONS_00072931-exon-scaffold_86-1491911889:962920..963769 | Clytia hemisphaerica | exon |
| TCONS_00072931-exon-scaffold_86-1510915933:962920..963769 | TCONS_00072931-exon-scaffold_86-1510915933:962920..963769 | Clytia hemisphaerica | exon |
| TCONS_00072931-exon-scaffold_86-1575043694:962920..963769 | TCONS_00072931-exon-scaffold_86-1575043694:962920..963769 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:956928..963769 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000504 | RRM_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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