TCONS_00072931 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072931
Unique NameTCONS_00072931
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1167

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072931 ID=TCONS_00072931|Name=TCONS_00072931|organism=Clytia hemisphaerica|type=transcript|length=1167bp
caaccccgaccgaaagtgactgttcCACCCCTagagattcattcctcttt
gattgtcacgggaattaactgctTGTGGTTGAAAAGAAcggcaaattacg
catgcgtattagtgtctatttgggtgagctggaaacattacatGAACTAA
CTCTTGTGATGTATTCAAAATAGTATGCACTTTTTCACCCGTTTCGCGCG
AACGAAACTCAACAACGAACCATCGAGTAGGGTagtatttttcacaaatt
ttggaaatatcaatctGTTCCAGTTCTGGTCAAACATCGAGAGCAGACCA
AGCAATTTGAATGAAAGaTGGTTGGAGTATTAAAACTTATGCACATTGCT
TACACTGTTACTGATGCTGATCTCAAAGGCCTCTTCAAGACACATGCAAT
TTATCCTGAAGATGTCCATTGGCTGACAAATAAGCATGGTAAGAAAACAG
GAACTGCTTTTATTGCTTTTCAAAAGGAAGATCTTAAGAAAGCCCAAGAA
TTGGATGGTATTTACTTTCGTGGACACAAAATGAATATTCATGCAAGCAG
TGCTCATGAATTTAATTCTCACTTCCCAAACACACCAATGACTAAGAATA
TTGGACAAGAATGGAAATTGTATGGTCGCCCTAAGGAGGGAGATTTGAAG
TTCGAATCAGAACACTACGAAACTAGAAAGATTAACAGAGGAGGTGCTAC
TGGTTATGATCAATATTACGAAAGTAATTTCAAGGCTGAATCATCTTATC
CTTACACTACCCAATCCCGTTTTGAAGAAAGAGGTGCTTACTCTGCCAAA
GCAGAATATCAAGATTATGCTGCGTCCTATAACACTTACCAAAATGAAGC
TCTCCCAAAAAGAGATGTTGCTTTTCAAAAAGACATGCATTTCCAGAGGA
AAGATATGCAATATCCAACTGGCAATTATCAGCAATATGCAAAAATGGAA
AGCTTCCCTACAAAACATTTTGTAGATACTGAAATATCTAAAACTACGTA
CGCTTATCCTCCAAAGAAAGATACCTCAAATAGAAGGGAGCCAAACAAAA
AAAGGGATTTGTCAAAGTCCCACAGCAAGAAAGATGAGGACAAACGTCAT
CGCCACAGGTCAAGATCGCCTACTTCAAGAAGCAAATATTCCCaatcaaa
atcttcttcttcAAGCA
Run BLAST on NCBI

protein sequence of TCONS_00072931-protein

>TCONS_00072931-protein ID=TCONS_00072931-protein|Name=TCONS_00072931-protein|organism=Clytia hemisphaerica|type=polypeptide|length=283bp
MVGVLKLMHIAYTVTDADLKGLFKTHAIYPEDVHWLTNKHGKKTGTAFIA
FQKEDLKKAQELDGIYFRGHKMNIHASSAHEFNSHFPNTPMTKNIGQEWK
LYGRPKEGDLKFESEHYETRKINRGGATGYDQYYESNFKAESSYPYTTQS
RFEERGAYSAKAEYQDYAASYNTYQNEALPKRDVAFQKDMHFQRKDMQYP
TGNYQQYAKMESFPTKHFVDTEISKTTYAYPPKKDTSNRREPNKKRDLSK
SHSKKDEDKRHRHRSRSPTSRSKYSQSKSSSSS
Run BLAST on NCBI

transcript from alignment at scaffold_86:956928..963769+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072931 ID=TCONS_00072931|Name=TCONS_00072931|organism=Clytia hemisphaerica|type=transcript|length=6842bp|location=Sequence derived from alignment at scaffold_86:956928..963769+ (Clytia hemisphaerica)
caaccccgaccgaaagtgactgttcCACCCCTagagattcattcctcttt gattgtcacgggaattaactgctTGTGGTTGAAAAGAAcggcaaattacg catgcgtattagtgtctatttgggtgagctggaaacattacatGAACTAA CTCTTGTGATGTATTCAAAATAGTATGCACTTTTTCACCCGTTTCGCGCG AACGAAACTCAACAACGAACCATCGAGTAGGGTagtatttttcacaaatt ttggaaatatcaatctGTTCCAGTTCTGGTCAAACATCGAGAGCAGACCA AGCAATTTGAATGAAAGGTATCAATCTTACTCTATCCTATGCTTTTCCCT TTTTTACAATCAAATCCCCAAAGCTAGAATGTTTAGCTATTATTTGTATT ATAAAGGCCATCAATAATGAAATTGGACcagcaattttattttattttaa acaatataTTTCGAATACTTGTGATTCATCTTCAGgttctaaaatataaa atagtaaaacagttaaaaccatttagtaaaaatatatattttccataACA CGCATACATACAACCTACTCTGATCAAANNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACCTACTC TGATCAAAGAACTAATGtaactaaaaaatcaaaatcaaaattcactAAAT CAAAAGTGAATTCCACTACAAATTCCCCTAAGGCAATAAAATCTATTAAA TCTTTATTGTAAGGGTTCTACTTTTGTATTCATCTTTGGTATTCAGTTTT GGTTTTACTTTATTAATCCACAGTGCCTCAAGGGACATTACGACCCTgtc tatgccccggacagtccggggtttttttgatgcgtgcccggggtccgtat tatttgtttttgagagactaccccggacgccccagacagcccgcgcggtc gctttttatagaatcgctgaccgcgcgggcttttttctaacatttgcccc ggactgtccggggcataggcagggtcgtggGACATTAAGCNCTTTGGTAT TCAGTTTTGGTTTTACTTTATTAATCCACAGTGCCTCAAGGGACATTAAG CATTGTTCAGATTTAATTGTGCGATCTAGAATCATTAcattttccatcaa aatttcacaattacaattttgaaaatggctTCCCACTGGAGTGTTTACGT TGCGGTGCTCTTTGATCCTGGTAATTAAGTGCCTGGCAGTCTGCCGGTCA TAGCTCGATTCACATCGAGAACATTTAATTTGATACACTACCATGCTCTT AAAGAGCTCCGTTTCAACTTTTGNGGTAATTAAGTACCTGGCAGTCTGCC CGACATAGCTCGATTCACATCGAGAACATTTAATTTGATACACTACCATG CTCTTGAGCTCCGTTTCAACTTTTGCTTTTAAAGAAGGAAGAACGTGTTT agtcattttcagttttttgactattttgcaCGGGGCATTaatctttttca aagatttttcgaaCTTTTCAGTAACGTTAACTCGATATTATAAGGCCGGC AGTGGCAGTTAGCAGTTGGCAGTGATTTCTAGGTATATATATCTATTAAG CCAATAACTAATTACTACAGCATAAACTAACATTTAGTAAAATTTGCCTT TCGCCTTTAAAAGACAGTTGTTGTTGAGAGACATAAATATTACCGTTAAT AATTCATCNGTTTAGCTAATAAGGCCGGCAGTGGCATTATTAGCGTTAAT AATTCATCCCGTGCCGTTTTGTACTGCCTGCTGGATTGGAGGGAGGGCAT AAATAAAGGAGTTTTTATATGGCTACGCTATACTGTATCGTAAGTCTGAG acagtaagttggtctaatgtgttgacatccctcttctaattacGACACCC TCTTCTAATtacgacacccttctttagaccagacccgatcaatcgaactt gtcgaactaatcgaacaatcgaactaatcgaactccatcgaatgattaaa gtttgattaaataaattaattgaactctaagattttttaaaagattgtga gtgttcgattaagttcgatcaaatgggtttcggttcgatcagttcgNtaa aagattgtgagtgttcgattaagttcgatcaatgggtttcggttcgatca gttcgataaaccaattttgttcgacaagtttgtgctgcttcgccaccgta tattagcttcttttcaaagccaaattcggaatgtaaatcgggaaattact tccgataacggattacaaACTTTttctgtatccttttagcgccagaagAA GCTGTTTGTTGGGGcgggcgtagtattccgccactcggccgcgcgCGAAA TCGCAACCAGGGGCTACAGACTTttttccggatagacaaatattcgggta caataaacatcaagctgttaagtccgggaactgtcgaaattggcaatcgc ttgccaggacaaagtttttacaagcgagggaagatatgaggattttaata tcatcgaactaatcgaactgctgctgcttcaaaaattgtgagtgttcgat taggttcgattaatttttttaatcgaactttaatcgttcgatggagttca attagttcgattgttcgattggtttgacaaATTCGATTGATCAGGTCTGG TTTAGAGATGGGAATAACTGATAAAAActcattttctttgcttttagAGA TCAGGCACTTTACTGGTATAGCCCTAACTGTTCATCATAAAAGCTACCAC GGGAAACATTGGATTTTTACCCAATCTGCCAATGCCCCACGACCACGCAA GCATTTAAGCTAAAGTCCCGCAAGACAAGTCCAgtgacaaaaatcagttt tttgaagtttgcaaaaaacgccacatagaagatctttcaaattcagttaT GTGAATAGAGtagtaaaaaaaacaacttttccagttccagaaatgaaaat aaagggaatagctaatgataattgaatactatccaatgATGATCTGCAGC ACTATCATAAAGCTAGAATCACTTTGCgtctcttcgcttgagaaaatgat tgacagatttaAGTTTTGGGCGTTCTGTGAGTGTTCTCAGCTCAATCCTT TGACAGCGCGCTAAAATGATAGACTTAGCTGCtgcagatcatttcgatgg aagttgtcggaatgtttacaaggctcttgacagaaaattgtttgtttgat tgtcaatgatgacagtgccgttattaattttgttaaatcTAACAAATTGA CATGCTAGCTCTAAAGCTtcaaaacagcatctaataacatgaaaaccaga atatgattcttcaatgggaatcaaaactataaagtgcacttacaaacatc aatttgtcagatctaacaaaattaataaccgcactgtcatcattgacaat aaaacaaacaattttctgtcaagacagctaggctggaacttcgatttttg aggattatgactttaccagctttttaacgatttttgcctcgctaacccaa atctcgcaacctctttaccttaaggaaagatcgaaattagagtttttcag cgttccgagaAAAACGCATACTGTAGCAgaaaatttttcatcttcacagg atcgattgtcaacaacaaaatacatcttttggtctttgggtttgtttctg acgtttttccttcaaagaatatcgatcactttccttttccccttcagcgc gcgagaaaaaaatgattagctcgcgttCTCAAGCGGGCGAATAAAAATGA GGCGTGCTATTAtggcactgagggtgctacttagtttccgccctattttg cgcccacgatagaatggtccaaatacgggggtattccaaatgataaactg tGTCGAATGTCGAAAAATCATATTCTGGtattcatgttattagatgcggt tttagagctttagagctacctGTCAGGGAGGAAACTTATCAGTGTTTTCC GAAACTTCTTATATTCCTATCTCTAGAAGGgtatcgaaattagaagaggg atatgtcaacattagaccaacttacggtagtaaCTTTGTGTAATGCATAG TCTGGTACATTGTTCaggaactgggcactagtactGCTCGCTTcgcaaag ttttttgaaaagaagatcgcctcaaacaataaaaatcaaaacaaagatga agaGTGTGGTAAAAGTTAAAAGTTGTCTAGAATtgattgaaaaggatttt caaaaaattaaacctaagtggaaaaattttagtttaaaaaaattttggtc cctctaactgggcaggggactctaccTAATTCCGTCATAGAAACTATCTG GTCTGCAAATTAGTAAGAGTAGTTTTTTTTAACAGCTTACTcagaaaatt ttctttattaGCAATTAAAAGACAAAATATTTGCTATCACGGAATTAGAA ATTCCTGCTTCCTGTAACTCAATTTCAAATctatatttttcaaggaaaac catattcgtatttttcaaggaaaaccATATATTCGTATTATTCAAGGAAA ACCTTATTCGTACTTTTCAAGGATAACCATATTCGTATTATTCAAGGAAG GAAAACCATAttcgtatttttcaaggaaaaccatatttgtatttttcaaa gaaaaccaTATTCGTATTTTTCAAGATCACTATTGATTTTCTTAGGATAG TCTTTTatattttccatgaaaattcacttttatttttaaaggaaaatcat tttcttctctcctgggtatttttcaatttaaaaaactttctttgtctATA TGATATTCCCGAAAGTGATAGAtgcaaaaagtttttaagattgaaaAATA GCCACAAGAGAAAAACATGATTTTCATTTAAGAATAATAGTGATTTTCCA tggaaaatataaaagtttatgctatgaaaatattaaagaatACGCTAAAT ATATGAGTGATCTTCCTTGAATATTATGAGAATAGTTTCCTTTGGAAAAT AAGGATGTGATTTTCCTTAGAAATTTTAAGAATAACTTCCCTTTGGAAAA TTAGATgattttccttgaagaatacaatgattttccttgaggaatacaga tgactttccttgaaaaatacagatgtgatttccttaaaaaaagtttttNA TGAGAATAGTTTCCCTTGGAAAATACGGATGTGATTTTCCTTAGAAATTT TAAGAATAACTTCCCTTTGGAAAATTAGATgattttccttgaagaataca atgattttccttgaggaatacagatgactttccttgaaaaatacagatgt gatttccttaaaaaaagtttttccaaaaatccaAATTAGAGCCACCATTG TAACTGTCATGGTGTTTCAGTGTCAAACATATTAAAAGTCTTGActttaa cttgaattaattGAATCTTTTGAAGCCACTAAATTGAAAATACACATaag accaatttgattacttGTTCTACGGGCCCAACCCACTTTGatattccaaa aatcaaaatcaaaataaaattgattttggtagtacattttcaatttcatt gcttatagactgccaaatttttaaaactttggtagtttttgcaatgtttt gagaattttatgttaaATTTTCCACTTTATCCATGGATTCgacctttttg tgtctttttattttctatttcgcatttttgtcgAGAGGAAGTAGTTGTTG CTGCCTTTTTAGtagattttataggtgaaattctacttgtACTTTTATAT TTTCCGGACCGACTGACCCTCTTCTATGGATAGCTTgacccgtaaaacaa caaattaaattggcctcgcctaagATGAAATAATGAACTCAAACCATATT GTCATGNGGATAGCTTgacccgtaaaacaacaaattaaattggcctcgcc taagATGAAATAATCAACTCAAACCATATTGTCATGTCAAGTTACAGTAA CAGTTACAATTCCCACTAAAgatcttttattttcacttttagaTGGTTGG AGTATTAAAACTTATGCACATTGCTTACACTGTTACTGATGCTGATCTCA AAGGCCTCTTCAAGACACATGCAATTTATCCTGAAGATGTCCATTGGCTG ACAAATAAGCATGGTAAGAAAACAGGAACTGCTTTTATTGCTTTTCAAAA GGAAGATCTTAAGAAAGCCCAAGAATTGGATGGTATTTACTTTCGTGGAC ACAAAATGAATATTCATGCAAGCAGTGCTCATGAATTTAATTCTCACTTC CCAAACACACCAATGACTAAGAATATTGGACAAGAATGGAAATTGTATGG TCGCCCTAAGGAGGGAGATTTGAAGTTCGAATCAGAACACTACGAAACTA GAAAGATTAACAGAGGAGGTGCTACTGGTTATGATCAATATTACGAAAGT AATTTCAAGGCTGAATCATCTTATCCTTACACTACCCAATCCCGTTTTGA AGAAAGAGGTGCTTACTCTGCCAAAGCAGAATATCAAGATTATGCTGCGT CCTATAACACTTACCAAAATGAAGCTCTCCCAAAAAGAGATGTTGCTTTT CAAAAAGACATGCATTTCCAGAGGAAAGATATGCAATATCCAACTGGCAA TTATCAGCAATATGCAAAAATGGAAAGCTTCCCTACAAAACATTTTGTAG ATACTGAAATATCTAAAACTACGTACGCTTATCCTCCAAAGAAAGATACC TCAAATAGAAGGGAGCCAAACAAAAAAAGGGATTTGTCAAAGTCCCACAG CAAGAAAGATGAGGACAAACGTCATCGCCACAGGTCAAGATCGCCTACTT CAAGAAGCAAATATTCCCaatcaaaatcttcttcttcAAGCA

Coding sequence (CDS) from alignment at scaffold_86:956928..963769+

>TCONS_00072931 ID=TCONS_00072931|Name=TCONS_00072931|organism=Clytia hemisphaerica|type=CDS|length=849bp|location=Sequence derived from alignment at scaffold_86:956928..963769+ (Clytia hemisphaerica)
aTGGTTGGAGTATTAAAACTTATGCACATTGCTTACACTGTTACTGATGC
TGATCTCAAAGGCCTCTTCAAGACACATGCAATTTATCCTGAAGATGTCC
ATTGGCTGACAAATAAGCATGGTAAGAAAACAGGAACTGCTTTTATTGCT
TTTCAAAAGGAAGATCTTAAGAAAGCCCAAGAATTGGATGGTATTTACTT
TCGTGGACACAAAATGAATATTCATGCAAGCAGTGCTCATGAATTTAATT
CTCACTTCCCAAACACACCAATGACTAAGAATATTGGACAAGAATGGAAA
TTGTATGGTCGCCCTAAGGAGGGAGATTTGAAGTTCGAATCAGAACACTA
CGAAACTAGAAAGATTAACAGAGGAGGTGCTACTGGTTATGATCAATATT
ACGAAAGTAATTTCAAGGCTGAATCATCTTATCCTTACACTACCCAATCC
CGTTTTGAAGAAAGAGGTGCTTACTCTGCCAAAGCAGAATATCAAGATTA
TGCTGCGTCCTATAACACTTACCAAAATGAAGCTCTCCCAAAAAGAGATG
TTGCTTTTCAAAAAGACATGCATTTCCAGAGGAAAGATATGCAATATCCA
ACTGGCAATTATCAGCAATATGCAAAAATGGAAAGCTTCCCTACAAAACA
TTTTGTAGATACTGAAATATCTAAAACTACGTACGCTTATCCTCCAAAGA
AAGATACCTCAAATAGAAGGGAGCCAAACAAAAAAAGGGATTTGTCAAAG
TCCCACAGCAAGAAAGATGAGGACAAACGTCATCGCCACAGGTCAAGATC
GCCTACTTCAAGAAGCAAATATTCCCaatcaaaatcttcttcttcAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045245XLOC_045245Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072931-proteinTCONS_00072931-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072931-exon-scaffold_86-1491911889:956928..957244TCONS_00072931-exon-scaffold_86-1491911889:956928..957244Clytia hemisphaericaexon
TCONS_00072931-exon-scaffold_86-1510915933:956928..957244TCONS_00072931-exon-scaffold_86-1510915933:956928..957244Clytia hemisphaericaexon
TCONS_00072931-exon-scaffold_86-1575043694:956928..957244TCONS_00072931-exon-scaffold_86-1575043694:956928..957244Clytia hemisphaericaexon
TCONS_00072931-exon-scaffold_86-1491911889:962920..963769TCONS_00072931-exon-scaffold_86-1491911889:962920..963769Clytia hemisphaericaexon
TCONS_00072931-exon-scaffold_86-1510915933:962920..963769TCONS_00072931-exon-scaffold_86-1510915933:962920..963769Clytia hemisphaericaexon
TCONS_00072931-exon-scaffold_86-1575043694:962920..963769TCONS_00072931-exon-scaffold_86-1575043694:962920..963769Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:956928..963769 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.06576 5.70636 3.22273 2.96544 16.0601 14.5566 7.7225 9.24282 7.67253 8.14214 6.63525 5.73456 5.31237 3.91709 6.26606 6.38356 5.42287 5.88744 2.58464 4.19535 4.37383 5.84648 6.38687 9.19931 10.4736 8.98357 2.80963 2.59893 4.29576 4.83892
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072931 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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