TCONS_00072923 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072923
Unique NameTCONS_00072923
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1684

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072923 ID=TCONS_00072923|Name=TCONS_00072923|organism=Clytia hemisphaerica|type=transcript|length=1684bp
ATTGGTTATTTGATCGATATGCTGGAATCGTTAGAAGAGGATCTAATGTT
TCAatcttatttatattttgtcGCCGATGGAAAATATGGAGAAATCGTGA
ACGGTTCTTGGGTTGGCATGGTCGGTGATTTGGTTAAAGGAAAAGCCGAT
TTGGCTTTAGCCTCGTTAACTATAAACACAAAACGATCTGAGGCTGTAAG
CTATTCACTACCTTTCCTTGTTGGTGGTATgatattgataagtatactgG
AAGAGAAAGCGCTACCTTTTGCTAATCTAGAACCTTTCAAAGCTATCGCA
CTTGATTTATGGATTGGAGTTATAGTCGTACCGAGTTGTACCGTATTAAT
TATTGTAATTACGGACAGGATAGGTGCTGGAAAACAGTACGCTCTTCGTG
AGAGTTTTACCTACATTATGGGCTTACTTTTCCAAAGAGACATGGGCGGT
AAAAATCCAATTAGTTGGAGTTCGAAAGTCATAGCTTTGAGTGTTGCTAT
GTTTACCTTGGTTGTCATGTCAACGTATACAGCATTGTTGACAGCAAATA
GTGTAACGTTTACACGAAGTCTTGGAATATCTGGATTCGATGACCCAAAG
aTCAAAAATCCAACACGAGAGTTTCGTTATGGTACAGTTGCCAACTCGGC
ATACACCCAATTATTTGCCAACAGTCAAGATCCTGTGTGGAATCGAATGG
CACAGTTCATGAAAGATTACAATTTTACAAATACATCAAAAGCGTTTGAG
CAACTGGCTACTGGAGAACTGCAAGCTATCATACACGATTACTTCATTGC
ATACCACAATATCGCTAAAGACACAAACTGTAGATTCAAATTTGCTGGTG
AGTCGATAAAAGATGGTGGTTCAGGGTTGGCTGTACAAAAAGGGTCAAAA
CTAGCTAACCAAATCTCCACGctaattttgaaatatcaagaccaagaatt
ttttttacaactgcaacaaaaatggatggaaaataaATGCGTTGAAACGT
CTAAAGGATCGTCGCCAGGGGCAACCAATAATAACAATGTAGTCGTTCGA
ATCGGTAAAGAATATTTTGGGGGAGTTTTTATTGCACTTTGTGGAGTAAc
tttaatttcttttggaatATTGGTTGTAGAATATTTATTGAATCGAAAAA
TTCACACAAGAACTTATTGGGTTTCTGAAAGACGGAGAAAAAGATGGAGA
AGATATTGAAATTGTTGGAAggaaaagctttatttaagcttTTGTTGCTT
TCTCTCGCGAAATGatcaaattcatgatattcatgacgtgatgttctcta
cggaaataccccggttttagccagtagtggaaAATTTatactagacaaaa
gttgtagaaaatttgccactactggcaaaaacggGGGTCTTctcgtagaa
aacattacgtcatgaatatcatgaatcttACTGAATGAATTTCCGTGATA
ATGGATACTTATTATTTTGTAGGACGCATTTATCAGTTTACACTTATCAC
CAACTCTAACACCATAAAGGTATCGGGTTTGAGTTAAGCAGGTTTGGAGA
AGACTTCTAAGTTCTCTTCAATGCAACGACCATGTTTTACGCAATTTAAT
CCGGGTAGACTGGAATCCAATCTTCTTTCATATAGCTTTCGAAGCATAAA
TTAACTAGATTTTTACGAATTTATAAAGCTTAAC
Run BLAST on NCBI

transcript from alignment at scaffold_86:818135..823828+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072923 ID=TCONS_00072923|Name=TCONS_00072923|organism=Clytia hemisphaerica|type=transcript|length=5694bp|location=Sequence derived from alignment at scaffold_86:818135..823828+ (Clytia hemisphaerica)
ATTGGTTATTTGATCGATATGCTGGAATCGTTAGAAGAGGATCTAATGTT TCAatcttatttatattttgtcGCCGATGGAAAATATGGAGAAATCGTGA ACGGTTCTTGGGTTGGCATGGTCGGTGATTTGGTTAAAGGAAAAGCCGAT TTGGCTTTAGCCTCGTTAACTATAAACACAAAACGATCTGAGGCTGTAAG CTATTCACTACCTTTCCTTGTTGGTGGTATgatattgataagtatactgG AAGAGAAAGCGCTACCTTTTGCTAATCTAGAACCTTTCAAAGCTATCGCA CTTGATTTATGGATTGGAGTTATAGTCGTACCGAGTTGTACCGTATTAAT TATTGTAATTACGGACAGGATAGGTGCTGGAAAACAGTACGCTCTTCGTG AGAGTTTTACCTACATTATGGGCTTACTTTTCCAAAGAGACATGGGCGGT AAAAATCCAATTAGTTGGAGTTCGAAAGTCATAGCTTTGAGTGTTGCTAT GTTTACCTTGGTTGTCATGTCAACGTATACAGCATTGTTGACAGCAAATA GTGTAACGTTTACACGAAGTCTTGGAATATCTGGATTCGATGACCCAAAG GTATAACTTactattcatttttttatctACACGTATCAACCTGCGGGTGA ATACACAGGATGCGAACATGTGATTACTccaaaaagttcacgtgatttta ttcccatgttccTTGTTTTACAACTTAacgctgataactttattagtgtc aataatctcgaaccaatcagaaataaatgtcatgtaacaagcacataaaa atttcgaataaaagcgtgatttgttatcagactttaattttgcaaccgaT GTATTTGCagttttttattagtttttgcattGACGTTTTTATGATTGGGG TgccttaaaaaaattttttgcgtcTTTACCTGATACAAGTTTCCGCCACA ATTTATTTCTTTTAATATACACTGGTAAACTTGTTTATGGTTAATGGATA AATTCATATTTGAtttctttagaacaacaaactatataagaaccatggcc aaaatatcaagaacaagctaagaacaatttaaggctttgtggactctaaa acacccgatttcttaggaaaattggcaaaaacacTCACGGCAAAAATAGT CTAggcaaaatggtgaaattaagaacatttttaagacttgaaactccaaa agttaagaacatccgatggcttcaaaaatgttggatgttcttataaaaaa cggttttctttTGTGACAAGCCTTGATCCCAAACATTAGGGAACTATAAA TGGCTCTTTGAACGCTTTCTTCGTTAGAAAGGATTTTTAACATACAAAGA GTTATCATTGGACCGTTTTAAAGGGCCCGTTCAAAAATAGAAGTTCCAGT GAAATAACCTCGAAAAATTTACGAACAATCGAACAGATCAATTTGTTGTT CAAATGAACTTGATATCATCTCAAAGATAAATAACTAATTGTGGTTTCAT GTGTAATTCAATACGCAGTTAAATACATTGTTATCGTTATCGAGAATTTC GGTCGCATAGCAACAAATTAGACAATCCTCTAATGAAATGCATTCCTTTC GCTTTCTCATTTTTTGTATCTGGTAAGAACCGGTATCCATGAACCTGGCA TTTACTGGTTTCTTCACCCCTGTGTGACAGACACANATTGGTTATTTGAT CGATATGCTGGAATCGTTAGAAGAGGATCTAATGTTTCAatcttatttat attttgtcGCCGATGGAAAATATGGAGAAATCGTGAACGGTTCTTGGGTT GGCATGGTCGGTGATTTGGTTAAAGGAAAAGCCGATTTGGCTTTAGCCTC GTTAACTATAAACACAAAACGATCTGAGGCTGTAAGCTATTCACTACCTT TCCTTGTTGGTGGTATgatattgataagtatactgGAAGAGAAAGCGCTA CCTTTTGCTAATCTAGAACCTTTCAAAGCTATCGCACTTGATTTATGGAT TGGAGTTATAGTCGTACCGAGTTGTACCGTATTAATTATTGTAATTACGG ACAGGATAGGTGCTGGAAAACAGTACGCTCTTCGTGAGAGTTTTACCTAC ATTATGGGCTTACTTTTCCAAAGAGACATGGGCGGTAAAAATCCAATTAG TTGGAGTTCGAAAGTCATAGCTTTGAGTGTTGCTATGTTTACCTTGGTTG TCATGTCAACGTATACAGCATTGTTGACAGCAAATAGTGTAACGTTTACA CGAAGTCTTGGAATATCTGGATTCGATGACCCAAAGGTATAACTTactat tcatttttttatctACACGTATCAACCTGCGGGTGAATACACAGGATGCG AACATGTGATTACTccaaaaagttcacgtgattttattcccatgttccTT GTTTTACAACTTAacgctgataactttattagtgtcaataatctcgaacc aatcagaaataaatgtcatgtaacaagcacataaaaatttcgaataaaag cgtgatttgttatcagactttaattttgcaaccgaTGTATTTGCagtttt ttattagtttttgcattGACGTTTTTATGATTGGGGTgccttaaaaaaat tttttgcgtcTTTACCTGATACAAGTTTCCGCCACAATTTATTTCTTTTA ATATACACTGGTAAACTTGTTTATGGTTAATGGATAAATTCATATTTGAt ttctttagaacaacaaactatataagaaccatggccaaaatatcaagaac aagctaagaacaatttaaggctttgtggactctaaaacacccgatttctt aggaaaattggcaaaaacacTCACGGCAAAAATAGTCTAggcaaaatggt gaaattaagaacatttttaagacttgaaactccaaaagttaagaacatcc gatggcttcaaaaatgttggatgttcttataaaaaacggttttctttTGT GACAAGCCTTGATCCCAAACATTAGGGAACTATAAATGGCTCTTTGAACG CTTTCTTCGTTAGAAAGGATTTTTAACATACAAAGAGTTATCATTGGACC GTTTTAAAGGGCCCGTTCAAAAATAGAAGTTCCAGTGAAATAACCTCGAA AAATTTACGAACAATCGAACAGATCAATTTGTTGTTCAAATGAATTTGAT ATCATCTCAAAGATAAATAACTAATTGTGGTTTCATGTGTAATTCAATAC GCAGTTAAATACATTGTTATCGTTATCGAGAATTTCGGTCGCATAGCAAC AAATTAGACAATCCTCTAATGAAATGCATTCCTTTCGCTTTCTCATTTTT TGTATCTGGTAAGAACCGGTATCCATGAACCTGGCATTTACTGGTTTCTT CACCCCTGTGTGACAGACACACTGGaatatttggccaaaatttcgtcccc ggtggtaaAAAGACCCTACAATTTCATTAAttccgttaaaaaataaattt caatgtaaaaaattgcactccaaaaccatcccaactgTAGTTTTTAAAGC TTGAAACTATAGAATTTCTATCACCATTGGGGTTTCGTTGGAAATTTTCA TTCCCACTGTGGGAGAAAGTTCATTGGGGTGTGAGACAAGGGGTTTTGTT ACTGGCAGTGGGAATGAAAAATTAGGGAGACTTGCTTGTAACGATTACAC GCTTTtgtataagaatagtgtacagtatatccatttcatcatggatattt ttaacattttggtaaaaatcatcctaaaatgcCATAACAGTATTCTCAGG ATCTAAAGCAAACCTAAATTTAAAACGTTATGCCaagcagtggcgtggtg ggaaaatttctctggggtagccaaggcaaatatggtgcccttttaaaaga ttttttgtttttggcgcccctctatATACGCTCATTTTACTTACGAATAC AATacaaaaaagggagtgtgcgagcgaagcgagccagaaagtttttgagg tgatgaggggcgccatttttgttttttcatttgtcaatctttcgatatgg gcgcctgaaaaatccttcttggcgccccttatttttgggcgccccctctc aaaagggctccgctgggggggcctggCCCCTCtggcccccctgccaccac gacACTGATGCCAAGCAAGAATAAAGTGTTGAACAACGATAAAGAACATT TGGCCATttcgatgtaaaaataaaaaatgccccAAATTTAGCCTAAATTT AGCATTCTTAGATTCAGTTTGTTATGATGGTAATATTCTTACTATATTCT TAATTCTTTTACCAATTTCATAATATTCTTATAGACTAAATTCTAACAAG AACTGTCactttttaaaacttgaaaaccaATTGGATTCATACTTAAATTT GATTGGTTTCCtcttatttttatattatttagaTCAAAAATCCAACACGA GAGTTTCGTTATGGTACAGTTGCCAACTCGGCATACACCCAATTATTTGC CAACAGTCAAGATCCTGTGTGGAATCGAATGGCACAGTTCATGAAAGATT ACAATTTTACAAATACATCAAAAGCGTTTGAGCAACTGGCTACTGGGTAT GGACCATTATAGTCTTAACTTAAATCTCCCTATCTTAGAATGCCAACACA GAAATAGCACAATGAGGTTGAAGGTTTTTGAGAAATCAGATCACTAAAAA TCAGATTACAAGATGTTCACTCCTCGTTTTCTGAAAAAGACTATTTTTGT CTCCCTTAATTTGTCAATGAATATCAGATTGCCAATTCTGTGTTCGAGTT TATTTCACTAATCAATCATTTTAGAGAACTGCAAGCTATCATACACGATT ACTTCATTGCATACCACAATATCGCTAAAGACACAAACTGTAGATTCAAA TTTGCTGGTGAGTCGATAAAAGATGGTGGTTCAGGGTTGGCTGTACAAAA AGGGTCAAAACTAGCTAACCAAATCTCCACGctaattttgaaatatcaag accaagaattttttttacaactgcaacaaaaatggatggaaaataaATGC GTTGAAACGTCTAAAGGATCGTCGCCAGGGGCAACCAATAATAACAATGT AGTCGTTCGAATCGGTAAAGAATATTTTGGGGGAGTTTTTATTGCACTTT GTGGAGTAActttaatttcttttggaatATTGGTTGTAGAATATTTATTG AATCGAAAAATTCACACAAGAACTTATTGGGTTTCTGAAAGACGGAGAAA AAGATGGAGAAGATATTGAAATTGTTGGAAggaaaagctttatttaagct tTTGTTGCTTTCTCTCGCGAAATGatcaaattcatgatattcatgacgtg atgttctctacggaaataccccggttttagccagtagtggaaAATTTata ctagacaaaagttgtagaaaatttgccactactggcaaaaacggGGGTCT TctcgtagaaaacattacgtcatgaatatcatgaatcttACTGAATGAAT TTCCGTGATAATGGATACTTATTATTTTGTAGGACGCATTTATCAGTTTA CACTTATCACCAACTCTAACACCATAAAGGTATCGGGTTTGAGTTAAGCA GGTTTGGAGAAGACTTCTAAGTTCTCTTCAATGCAACGACCATGTTTTAC GCAATTTAATCCGGGTAGACTGGAATCCAATCTTCTTTCATATAGCTTTC GAAGCATAAATTAACTAGATTTTTACGAATTTATAAAGCTTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045241XLOC_045241Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072923-exon-scaffold_86-1491911889:818135..818734TCONS_00072923-exon-scaffold_86-1491911889:818135..818734Clytia hemisphaericaexon
TCONS_00072923-exon-scaffold_86-1510915933:818135..818734TCONS_00072923-exon-scaffold_86-1510915933:818135..818734Clytia hemisphaericaexon
TCONS_00072923-exon-scaffold_86-1575043694:818135..818734TCONS_00072923-exon-scaffold_86-1575043694:818135..818734Clytia hemisphaericaexon
TCONS_00072923-exon-scaffold_86-1491911889:822517..822680TCONS_00072923-exon-scaffold_86-1491911889:822517..822680Clytia hemisphaericaexon
TCONS_00072923-exon-scaffold_86-1510915933:822517..822680TCONS_00072923-exon-scaffold_86-1510915933:822517..822680Clytia hemisphaericaexon
TCONS_00072923-exon-scaffold_86-1575043694:822517..822680TCONS_00072923-exon-scaffold_86-1575043694:822517..822680Clytia hemisphaericaexon
TCONS_00072923-exon-scaffold_86-1491911889:822909..823828TCONS_00072923-exon-scaffold_86-1491911889:822909..823828Clytia hemisphaericaexon
TCONS_00072923-exon-scaffold_86-1510915933:822909..823828TCONS_00072923-exon-scaffold_86-1510915933:822909..823828Clytia hemisphaericaexon
TCONS_00072923-exon-scaffold_86-1575043694:822909..823828TCONS_00072923-exon-scaffold_86-1575043694:822909..823828Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:818135..823828 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.065221 0.0355811 0.0133024 0.0532884 0 0 0.146686 0.164948 0.145329 0.449232 0.0634555 0.132895 0.398475 0.142341 0.00391388 0.00231396 0.270993 0.154489 0.472171 0.250248 0.389055 0.206248 0.0705768 0.222937 0.280148 0.217594 0.199584 0.17353 0 0.0512972
Blast
BLAST of TCONS_00072923 vs. Swiss-Prot (Human)
Match: NMD3A (Glutamate receptor ionotropic, NMDA 3A OS=Homo sapiens GN=GRIN3A PE=1 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 3.893e-45
Identity = 119/409 (29.10%), Postives = 193/409 (47.19%), Query Frame = 1
Query:    4 GYLIDMLESLEEDLMFQSYLYFVADGKYGEIVNGSWVGMVGDLVKGKADLALASLTINTKRSEAVSYSLPFLVGGMILISILEEKALPFANLEPFKAIALDLWIGVIVVPSCTVLIIVITDRIGA----------GKQYALRESFTYIMGLLFQRDMGGKNPISWSSKVIALSVAMFTLVVMSTYTALLTANSVTFTRSLGISGFDDPKIKNPTREFRYGTVANSAYTQLFANSQDPVWNRMAQFMKDYNFTNTSKAFEQLATG--ELQAIIHDYFIAYHNIAKDTNCRFKFAGESIKDGGSGLAVQKGSKLANQISTLILKYQDQEFFLQLQQKWMENKCVETSKGSSPGATNNNNVVVRIGKEYFGGVFIALC---GVT-LISFGILVVEYLLNRKIHTRT---YWV 1173
            GY ID+LE + ED+ F   LY V DGKYG   NG W G+VGDL++G A +A+ S +INT RS+ + ++ PF    + ++    + A P         +   +W+G+ V    T + + + +               K ++   +      LLF R +  K P  W+ + +    A+F +  +STYTA L A  V       +SG  DPK+ +P++ FR+GTV  S+       S    +  M ++M+ YN   T    E L     +L A I D  +  + ++ D +C+    G+     G G+ +   S L   IS LI +Y+   F   L  KW   + V   K S    T      +++G ++F G+F+ LC   G++ L + G  +V  LL  +I  ++   YW+
Sbjct:  578 GYCIDLLEKIAEDMNFDFDLYIVGDGKYGAWKNGHWTGLVGDLLRGTAHMAVTSFSINTARSQVIDFTSPFFSTSLGILVRTRDTAAPIGAF--MWPLHWTMWLGIFVALHITAVFLTLYEWKSPFGLTPKGRNRSKVFSFSSALNICYALLFGRTVAIKPPKCWTGRFLMNLWAIFCMFCLSTYTANLAAVMVGEKIYEELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQS----FPEMHEYMRRYNVPATPDGVEYLKNDPEKLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPNSPLTANISELISQYKSHGFMDMLHDKWY--RVVPCGKRSF-AVTE----TLQMGIKHFSGLFVLLCIGFGLSILTTIGEHIVYRLLLPRIKNKSKLQYWL 973          
The following BLAST results are available for this feature:
BLAST of TCONS_00072923 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NMD3A3.893e-4529.10Glutamate receptor ionotropic, NMDA 3A OS=Homo sap... [more]
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