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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072923 ID=TCONS_00072923|Name=TCONS_00072923|organism=Clytia hemisphaerica|type=transcript|length=1684bp
ATTGGTTATTTGATCGATATGCTGGAATCGTTAGAAGAGGATCTAATGTT
TCAatcttatttatattttgtcGCCGATGGAAAATATGGAGAAATCGTGA
ACGGTTCTTGGGTTGGCATGGTCGGTGATTTGGTTAAAGGAAAAGCCGAT
TTGGCTTTAGCCTCGTTAACTATAAACACAAAACGATCTGAGGCTGTAAG
CTATTCACTACCTTTCCTTGTTGGTGGTATgatattgataagtatactgG
AAGAGAAAGCGCTACCTTTTGCTAATCTAGAACCTTTCAAAGCTATCGCA
CTTGATTTATGGATTGGAGTTATAGTCGTACCGAGTTGTACCGTATTAAT
TATTGTAATTACGGACAGGATAGGTGCTGGAAAACAGTACGCTCTTCGTG
AGAGTTTTACCTACATTATGGGCTTACTTTTCCAAAGAGACATGGGCGGT
AAAAATCCAATTAGTTGGAGTTCGAAAGTCATAGCTTTGAGTGTTGCTAT
GTTTACCTTGGTTGTCATGTCAACGTATACAGCATTGTTGACAGCAAATA
GTGTAACGTTTACACGAAGTCTTGGAATATCTGGATTCGATGACCCAAAG
aTCAAAAATCCAACACGAGAGTTTCGTTATGGTACAGTTGCCAACTCGGC
ATACACCCAATTATTTGCCAACAGTCAAGATCCTGTGTGGAATCGAATGG
CACAGTTCATGAAAGATTACAATTTTACAAATACATCAAAAGCGTTTGAG
CAACTGGCTACTGGAGAACTGCAAGCTATCATACACGATTACTTCATTGC
ATACCACAATATCGCTAAAGACACAAACTGTAGATTCAAATTTGCTGGTG
AGTCGATAAAAGATGGTGGTTCAGGGTTGGCTGTACAAAAAGGGTCAAAA
CTAGCTAACCAAATCTCCACGctaattttgaaatatcaagaccaagaatt
ttttttacaactgcaacaaaaatggatggaaaataaATGCGTTGAAACGT
CTAAAGGATCGTCGCCAGGGGCAACCAATAATAACAATGTAGTCGTTCGA
ATCGGTAAAGAATATTTTGGGGGAGTTTTTATTGCACTTTGTGGAGTAAc
tttaatttcttttggaatATTGGTTGTAGAATATTTATTGAATCGAAAAA
TTCACACAAGAACTTATTGGGTTTCTGAAAGACGGAGAAAAAGATGGAGA
AGATATTGAAATTGTTGGAAggaaaagctttatttaagcttTTGTTGCTT
TCTCTCGCGAAATGatcaaattcatgatattcatgacgtgatgttctcta
cggaaataccccggttttagccagtagtggaaAATTTatactagacaaaa
gttgtagaaaatttgccactactggcaaaaacggGGGTCTTctcgtagaa
aacattacgtcatgaatatcatgaatcttACTGAATGAATTTCCGTGATA
ATGGATACTTATTATTTTGTAGGACGCATTTATCAGTTTACACTTATCAC
CAACTCTAACACCATAAAGGTATCGGGTTTGAGTTAAGCAGGTTTGGAGA
AGACTTCTAAGTTCTCTTCAATGCAACGACCATGTTTTACGCAATTTAAT
CCGGGTAGACTGGAATCCAATCTTCTTTCATATAGCTTTCGAAGCATAAA
TTAACTAGATTTTTACGAATTTATAAAGCTTAAC Run BLAST on NCBI transcript from alignment at scaffold_86:818135..823828+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072923 ID=TCONS_00072923|Name=TCONS_00072923|organism=Clytia hemisphaerica|type=transcript|length=5694bp|location=Sequence derived from alignment at scaffold_86:818135..823828+ (Clytia hemisphaerica)
ATTGGTTATTTGATCGATATGCTGGAATCGTTAGAAGAGGATCTAATGTT
TCAatcttatttatattttgtcGCCGATGGAAAATATGGAGAAATCGTGA
ACGGTTCTTGGGTTGGCATGGTCGGTGATTTGGTTAAAGGAAAAGCCGAT
TTGGCTTTAGCCTCGTTAACTATAAACACAAAACGATCTGAGGCTGTAAG
CTATTCACTACCTTTCCTTGTTGGTGGTATgatattgataagtatactgG
AAGAGAAAGCGCTACCTTTTGCTAATCTAGAACCTTTCAAAGCTATCGCA
CTTGATTTATGGATTGGAGTTATAGTCGTACCGAGTTGTACCGTATTAAT
TATTGTAATTACGGACAGGATAGGTGCTGGAAAACAGTACGCTCTTCGTG
AGAGTTTTACCTACATTATGGGCTTACTTTTCCAAAGAGACATGGGCGGT
AAAAATCCAATTAGTTGGAGTTCGAAAGTCATAGCTTTGAGTGTTGCTAT
GTTTACCTTGGTTGTCATGTCAACGTATACAGCATTGTTGACAGCAAATA
GTGTAACGTTTACACGAAGTCTTGGAATATCTGGATTCGATGACCCAAAG
GTATAACTTactattcatttttttatctACACGTATCAACCTGCGGGTGA
ATACACAGGATGCGAACATGTGATTACTccaaaaagttcacgtgatttta
ttcccatgttccTTGTTTTACAACTTAacgctgataactttattagtgtc
aataatctcgaaccaatcagaaataaatgtcatgtaacaagcacataaaa
atttcgaataaaagcgtgatttgttatcagactttaattttgcaaccgaT
GTATTTGCagttttttattagtttttgcattGACGTTTTTATGATTGGGG
TgccttaaaaaaattttttgcgtcTTTACCTGATACAAGTTTCCGCCACA
ATTTATTTCTTTTAATATACACTGGTAAACTTGTTTATGGTTAATGGATA
AATTCATATTTGAtttctttagaacaacaaactatataagaaccatggcc
aaaatatcaagaacaagctaagaacaatttaaggctttgtggactctaaa
acacccgatttcttaggaaaattggcaaaaacacTCACGGCAAAAATAGT
CTAggcaaaatggtgaaattaagaacatttttaagacttgaaactccaaa
agttaagaacatccgatggcttcaaaaatgttggatgttcttataaaaaa
cggttttctttTGTGACAAGCCTTGATCCCAAACATTAGGGAACTATAAA
TGGCTCTTTGAACGCTTTCTTCGTTAGAAAGGATTTTTAACATACAAAGA
GTTATCATTGGACCGTTTTAAAGGGCCCGTTCAAAAATAGAAGTTCCAGT
GAAATAACCTCGAAAAATTTACGAACAATCGAACAGATCAATTTGTTGTT
CAAATGAACTTGATATCATCTCAAAGATAAATAACTAATTGTGGTTTCAT
GTGTAATTCAATACGCAGTTAAATACATTGTTATCGTTATCGAGAATTTC
GGTCGCATAGCAACAAATTAGACAATCCTCTAATGAAATGCATTCCTTTC
GCTTTCTCATTTTTTGTATCTGGTAAGAACCGGTATCCATGAACCTGGCA
TTTACTGGTTTCTTCACCCCTGTGTGACAGACACANATTGGTTATTTGAT
CGATATGCTGGAATCGTTAGAAGAGGATCTAATGTTTCAatcttatttat
attttgtcGCCGATGGAAAATATGGAGAAATCGTGAACGGTTCTTGGGTT
GGCATGGTCGGTGATTTGGTTAAAGGAAAAGCCGATTTGGCTTTAGCCTC
GTTAACTATAAACACAAAACGATCTGAGGCTGTAAGCTATTCACTACCTT
TCCTTGTTGGTGGTATgatattgataagtatactgGAAGAGAAAGCGCTA
CCTTTTGCTAATCTAGAACCTTTCAAAGCTATCGCACTTGATTTATGGAT
TGGAGTTATAGTCGTACCGAGTTGTACCGTATTAATTATTGTAATTACGG
ACAGGATAGGTGCTGGAAAACAGTACGCTCTTCGTGAGAGTTTTACCTAC
ATTATGGGCTTACTTTTCCAAAGAGACATGGGCGGTAAAAATCCAATTAG
TTGGAGTTCGAAAGTCATAGCTTTGAGTGTTGCTATGTTTACCTTGGTTG
TCATGTCAACGTATACAGCATTGTTGACAGCAAATAGTGTAACGTTTACA
CGAAGTCTTGGAATATCTGGATTCGATGACCCAAAGGTATAACTTactat
tcatttttttatctACACGTATCAACCTGCGGGTGAATACACAGGATGCG
AACATGTGATTACTccaaaaagttcacgtgattttattcccatgttccTT
GTTTTACAACTTAacgctgataactttattagtgtcaataatctcgaacc
aatcagaaataaatgtcatgtaacaagcacataaaaatttcgaataaaag
cgtgatttgttatcagactttaattttgcaaccgaTGTATTTGCagtttt
ttattagtttttgcattGACGTTTTTATGATTGGGGTgccttaaaaaaat
tttttgcgtcTTTACCTGATACAAGTTTCCGCCACAATTTATTTCTTTTA
ATATACACTGGTAAACTTGTTTATGGTTAATGGATAAATTCATATTTGAt
ttctttagaacaacaaactatataagaaccatggccaaaatatcaagaac
aagctaagaacaatttaaggctttgtggactctaaaacacccgatttctt
aggaaaattggcaaaaacacTCACGGCAAAAATAGTCTAggcaaaatggt
gaaattaagaacatttttaagacttgaaactccaaaagttaagaacatcc
gatggcttcaaaaatgttggatgttcttataaaaaacggttttctttTGT
GACAAGCCTTGATCCCAAACATTAGGGAACTATAAATGGCTCTTTGAACG
CTTTCTTCGTTAGAAAGGATTTTTAACATACAAAGAGTTATCATTGGACC
GTTTTAAAGGGCCCGTTCAAAAATAGAAGTTCCAGTGAAATAACCTCGAA
AAATTTACGAACAATCGAACAGATCAATTTGTTGTTCAAATGAATTTGAT
ATCATCTCAAAGATAAATAACTAATTGTGGTTTCATGTGTAATTCAATAC
GCAGTTAAATACATTGTTATCGTTATCGAGAATTTCGGTCGCATAGCAAC
AAATTAGACAATCCTCTAATGAAATGCATTCCTTTCGCTTTCTCATTTTT
TGTATCTGGTAAGAACCGGTATCCATGAACCTGGCATTTACTGGTTTCTT
CACCCCTGTGTGACAGACACACTGGaatatttggccaaaatttcgtcccc
ggtggtaaAAAGACCCTACAATTTCATTAAttccgttaaaaaataaattt
caatgtaaaaaattgcactccaaaaccatcccaactgTAGTTTTTAAAGC
TTGAAACTATAGAATTTCTATCACCATTGGGGTTTCGTTGGAAATTTTCA
TTCCCACTGTGGGAGAAAGTTCATTGGGGTGTGAGACAAGGGGTTTTGTT
ACTGGCAGTGGGAATGAAAAATTAGGGAGACTTGCTTGTAACGATTACAC
GCTTTtgtataagaatagtgtacagtatatccatttcatcatggatattt
ttaacattttggtaaaaatcatcctaaaatgcCATAACAGTATTCTCAGG
ATCTAAAGCAAACCTAAATTTAAAACGTTATGCCaagcagtggcgtggtg
ggaaaatttctctggggtagccaaggcaaatatggtgcccttttaaaaga
ttttttgtttttggcgcccctctatATACGCTCATTTTACTTACGAATAC
AATacaaaaaagggagtgtgcgagcgaagcgagccagaaagtttttgagg
tgatgaggggcgccatttttgttttttcatttgtcaatctttcgatatgg
gcgcctgaaaaatccttcttggcgccccttatttttgggcgccccctctc
aaaagggctccgctgggggggcctggCCCCTCtggcccccctgccaccac
gacACTGATGCCAAGCAAGAATAAAGTGTTGAACAACGATAAAGAACATT
TGGCCATttcgatgtaaaaataaaaaatgccccAAATTTAGCCTAAATTT
AGCATTCTTAGATTCAGTTTGTTATGATGGTAATATTCTTACTATATTCT
TAATTCTTTTACCAATTTCATAATATTCTTATAGACTAAATTCTAACAAG
AACTGTCactttttaaaacttgaaaaccaATTGGATTCATACTTAAATTT
GATTGGTTTCCtcttatttttatattatttagaTCAAAAATCCAACACGA
GAGTTTCGTTATGGTACAGTTGCCAACTCGGCATACACCCAATTATTTGC
CAACAGTCAAGATCCTGTGTGGAATCGAATGGCACAGTTCATGAAAGATT
ACAATTTTACAAATACATCAAAAGCGTTTGAGCAACTGGCTACTGGGTAT
GGACCATTATAGTCTTAACTTAAATCTCCCTATCTTAGAATGCCAACACA
GAAATAGCACAATGAGGTTGAAGGTTTTTGAGAAATCAGATCACTAAAAA
TCAGATTACAAGATGTTCACTCCTCGTTTTCTGAAAAAGACTATTTTTGT
CTCCCTTAATTTGTCAATGAATATCAGATTGCCAATTCTGTGTTCGAGTT
TATTTCACTAATCAATCATTTTAGAGAACTGCAAGCTATCATACACGATT
ACTTCATTGCATACCACAATATCGCTAAAGACACAAACTGTAGATTCAAA
TTTGCTGGTGAGTCGATAAAAGATGGTGGTTCAGGGTTGGCTGTACAAAA
AGGGTCAAAACTAGCTAACCAAATCTCCACGctaattttgaaatatcaag
accaagaattttttttacaactgcaacaaaaatggatggaaaataaATGC
GTTGAAACGTCTAAAGGATCGTCGCCAGGGGCAACCAATAATAACAATGT
AGTCGTTCGAATCGGTAAAGAATATTTTGGGGGAGTTTTTATTGCACTTT
GTGGAGTAActttaatttcttttggaatATTGGTTGTAGAATATTTATTG
AATCGAAAAATTCACACAAGAACTTATTGGGTTTCTGAAAGACGGAGAAA
AAGATGGAGAAGATATTGAAATTGTTGGAAggaaaagctttatttaagct
tTTGTTGCTTTCTCTCGCGAAATGatcaaattcatgatattcatgacgtg
atgttctctacggaaataccccggttttagccagtagtggaaAATTTata
ctagacaaaagttgtagaaaatttgccactactggcaaaaacggGGGTCT
TctcgtagaaaacattacgtcatgaatatcatgaatcttACTGAATGAAT
TTCCGTGATAATGGATACTTATTATTTTGTAGGACGCATTTATCAGTTTA
CACTTATCACCAACTCTAACACCATAAAGGTATCGGGTTTGAGTTAAGCA
GGTTTGGAGAAGACTTCTAAGTTCTCTTCAATGCAACGACCATGTTTTAC
GCAATTTAATCCGGGTAGACTGGAATCCAATCTTCTTTCATATAGCTTTC
GAAGCATAAATTAACTAGATTTTTACGAATTTATAAAGCTTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072923-exon-scaffold_86-1491911889:818135..818734 | TCONS_00072923-exon-scaffold_86-1491911889:818135..818734 | Clytia hemisphaerica | exon |
| TCONS_00072923-exon-scaffold_86-1510915933:818135..818734 | TCONS_00072923-exon-scaffold_86-1510915933:818135..818734 | Clytia hemisphaerica | exon |
| TCONS_00072923-exon-scaffold_86-1575043694:818135..818734 | TCONS_00072923-exon-scaffold_86-1575043694:818135..818734 | Clytia hemisphaerica | exon |
| TCONS_00072923-exon-scaffold_86-1491911889:822517..822680 | TCONS_00072923-exon-scaffold_86-1491911889:822517..822680 | Clytia hemisphaerica | exon |
| TCONS_00072923-exon-scaffold_86-1510915933:822517..822680 | TCONS_00072923-exon-scaffold_86-1510915933:822517..822680 | Clytia hemisphaerica | exon |
| TCONS_00072923-exon-scaffold_86-1575043694:822517..822680 | TCONS_00072923-exon-scaffold_86-1575043694:822517..822680 | Clytia hemisphaerica | exon |
| TCONS_00072923-exon-scaffold_86-1491911889:822909..823828 | TCONS_00072923-exon-scaffold_86-1491911889:822909..823828 | Clytia hemisphaerica | exon |
| TCONS_00072923-exon-scaffold_86-1510915933:822909..823828 | TCONS_00072923-exon-scaffold_86-1510915933:822909..823828 | Clytia hemisphaerica | exon |
| TCONS_00072923-exon-scaffold_86-1575043694:822909..823828 | TCONS_00072923-exon-scaffold_86-1575043694:822909..823828 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:818135..823828 + |
Blast
BLAST of TCONS_00072923 vs. Swiss-Prot (Human)
Match: NMD3A (Glutamate receptor ionotropic, NMDA 3A OS=Homo sapiens GN=GRIN3A PE=1 SV=2) HSP 1 Score: 172.555 bits (436), Expect = 3.893e-45 Identity = 119/409 (29.10%), Postives = 193/409 (47.19%), Query Frame = 1
Query: 4 GYLIDMLESLEEDLMFQSYLYFVADGKYGEIVNGSWVGMVGDLVKGKADLALASLTINTKRSEAVSYSLPFLVGGMILISILEEKALPFANLEPFKAIALDLWIGVIVVPSCTVLIIVITDRIGA----------GKQYALRESFTYIMGLLFQRDMGGKNPISWSSKVIALSVAMFTLVVMSTYTALLTANSVTFTRSLGISGFDDPKIKNPTREFRYGTVANSAYTQLFANSQDPVWNRMAQFMKDYNFTNTSKAFEQLATG--ELQAIIHDYFIAYHNIAKDTNCRFKFAGESIKDGGSGLAVQKGSKLANQISTLILKYQDQEFFLQLQQKWMENKCVETSKGSSPGATNNNNVVVRIGKEYFGGVFIALC---GVT-LISFGILVVEYLLNRKIHTRT---YWV 1173
GY ID+LE + ED+ F LY V DGKYG NG W G+VGDL++G A +A+ S +INT RS+ + ++ PF + ++ + A P + +W+G+ V T + + + + K ++ + LLF R + K P W+ + + A+F + +STYTA L A V +SG DPK+ +P++ FR+GTV S+ S + M ++M+ YN T E L +L A I D + + ++ D +C+ G+ G G+ + S L IS LI +Y+ F L KW + V K S T +++G ++F G+F+ LC G++ L + G +V LL +I ++ YW+
Sbjct: 578 GYCIDLLEKIAEDMNFDFDLYIVGDGKYGAWKNGHWTGLVGDLLRGTAHMAVTSFSINTARSQVIDFTSPFFSTSLGILVRTRDTAAPIGAF--MWPLHWTMWLGIFVALHITAVFLTLYEWKSPFGLTPKGRNRSKVFSFSSALNICYALLFGRTVAIKPPKCWTGRFLMNLWAIFCMFCLSTYTANLAAVMVGEKIYEELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQS----FPEMHEYMRRYNVPATPDGVEYLKNDPEKLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPNSPLTANISELISQYKSHGFMDMLHDKWY--RVVPCGKRSF-AVTE----TLQMGIKHFSGLFVLLCIGFGLSILTTIGEHIVYRLLLPRIKNKSKLQYWL 973
The following BLAST results are available for this feature:
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