TCONS_00072909 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072909
Unique NameTCONS_00072909
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1264

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072909 ID=TCONS_00072909|Name=TCONS_00072909|organism=Clytia hemisphaerica|type=transcript|length=1264bp
GAGGTTTTGAGTCATGGTTTTGTTTATTATCAATATGGGTCATTATGAAG
ACGAAGTTTCACGCGGGAAATATTTATACCAACATTGATCAAAATATTCT
CATTTCACCTTTCCTGATAAATTTTCTGAGAATGTGGATACTGAAATCAC
AAAGTGAAGAAAATGCTACAGGTGATTGTTACTACCTTTTACCGAAGCGA
AAATATGTGGTGGGAAGGAAAGattgtGATATTGTTATTACTGGAGATGC
TTCGATCAGCAGAAAGCACTGCATCATTGAAGTCACGGAACTCGATGGCC
CTAATTGCACCTGCGTCATATTTACCGACACTTCAAAGACAGGCaccaaa
attaatgacgtcaaACTCAAATCTAAAGAGGAAACTGAAGCTCACGATAA
CAGTACCATTGCGTTTggtaaaatgaaatttcaacTACGACATCAAAAGT
ATTTAGTTGTACCCTCCTCAATAAAGAAATCAGAACAGAAGCAACTTCTA
GAGCCGGTTTCTAAACTAGGGGGAAGGCTCGTCAAAGAATGGAATGCAGA
AACGACACATCTTGTTATgaccaaaattatttttacaataaaGGTTGTGT
ACGCTCTTGCTTGTGGTAAACATATCGTCACTCCAAAGTTCTTTGAAGAT
ATTTTGGATTGCTGCGATAAGAAACTTGGCAAAAAACTCCCTGATGAAAA
GAATTATTTACCGGTGATACAAGAACAATCGATGATCAACATGAATGCGT
TGTTCTATCCTAATCAAGAACGTAGTCAGCtgtttgttggaaagatattc
gtTACCCTGTCTGCAACTCAGCACTCGCGGTTGAAACATGCGATCCAGTA
TAGTGGTGGCTCAATGATTTTACAAGAGAGTAGAGAGCAGAAAATCTTGA
AAAGTATATCAACCAGTCAAACTATGGTGATGGCTTTGGAGGGCCATGAA
GAAAGATCACTGTCCAAAGATCAATCAAAGTGGATGAAAGAGTTACAGAA
TATGCTTTCTACTCATGGATTGCGTGGTATTGGAGAATCTGAGATTGGAT
TGGCCCTCATCAACAATTCGCTTGAGAAATATTGCAATCCTGCTTCTAAA
AATGtgaaCGTATTCTGCACGACGACCGATACCCAGGCACTTTCTCAACA
ACAATCACAATTATCTGAGATGTCTCAAGTTATGCTACTACCGATCAGTC
ACAATaagTAAACGAAACGAATCAGAAGAAGACGACGCTACATCTAAAAA
ACCTAAAATGGTGG
Run BLAST on NCBI

transcript from alignment at scaffold_86:661799..676995+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072909 ID=TCONS_00072909|Name=TCONS_00072909|organism=Clytia hemisphaerica|type=transcript|length=15197bp|location=Sequence derived from alignment at scaffold_86:661799..676995+ (Clytia hemisphaerica)
GAGGTTTTGAGTCATGGTTTTGTTTATTATCAATATGGGTCATTATGAAG
ACGAAGTTTCACGCGGGAAATATTTATACCAACATTGATCAAAATATTCT
CATTTCACCTTTCCTGATAAATTTTCTGAGAATGTGGATACTGAAATCAC
AAAGTGAAGAAAATGCTACAGGTAAAAATAGATCTATTAAAGATGTTTTG
TCGATCATTTGACAGCACTCCGTGGTTATAGATTATTAAGATAAAATGAC
atactttttaacaacttttttctatgtcatcatttttttgAAGCCCTTTT
TGTTTGTGTAGTAAGTAGGAGAATGTGTCTTTCTATAGACCTTTTCGGCT
tgccatccgccatattgaattgtaggcaaaaattatggtggccgaattgc
tgtggtgaaattcccttagaaagtatgcaaaacatatgcaaaaagaaagt
attaatataaaacttaccgTCAACTGCAATTGGTCGAAACACATGGGCGG
GACTgcttgatatctggtctgtattttcacttactgttaatagacctttt
ttcaaagaggccaccctgttgaatagacctttttttagataggccaccct
gttgaataattatgtagtccagcagaaaaacaatgatacagtcatgcata
attattacattatgcgtgatacagtaattatgcatgactgtatcatagac
cttttttcaaagaggacatcctgttgaataattatgtagtccagccatta
aaacaatgatagagccatacataattactgtatcatgcatattgtaataa
ttatgcatggttttatcattgtgtttttctgctggactacataattattc
aacagggtggttgcctctttgaaaaaaggtctattgtttttctgctggac
tacataattattcaacagggtggcctctataaaaaaaggtctataattat
gtagtccagcagaaaaacaatgataaaaccatgcataattattacaatat
gcatgatacagtaattatgcatggctctattattgtttttatggctggac
tacataattattcaacaggacgtcctctttgaaaaaaggtctattctctt
tgacaaaaaatttgttttgataactgcaccaagtttatcaatcatacttc
ttcgaggagcctgccgacgcaccggacttaacgaacacagAACACGCCAA
AGTTCGGTGTATGTAAAATGAGAactttttttaccaccggacaatctcta
caccggacttaaggaagtcggatgtccggtgtcggagaaggatatttctT
TCCCCGGACAATCagaacaccggacatgaccagtccggtgcgtccagtgt
ttcttaattttttgtttcataaatgtccggcatccaaaatttcctgtctg
cAACACCGggctgacaccggacttattgcgtccggtgtagcaaaaggata
ctttttgccaccggacaaatacaccggaagtctgcgtcggcagggtcctc
ttctttgttcctcttagagtgcacagacacttgCCACGCATTGttgtgtg
ttccactacggattttttatagatttcgatttaaaagcctactcggtgcg
aaagagaaattgtgtgttttaatatgccgttcattaactcaaatcaaatg
acttcggaggttcggtgaaatggtggccgaattgctatGCCgttccatgt
tttgtcagataatcccaagttagagcagttgacggtacatgcataattgg
tattatattaaagtgtaatcttgtagaagaaagattaaatttgcttcttt
tgaaaactagaaataatcaaattttgctccatctcttagaacaagcactt
caaaaaaccataacattagacataaactcaagctgaaaaatcacccgcga
aggtagaaaaataatccttattcggctgacggtaaattattctcctgggg
aATAAAACCGCCAAACCAGgccaaacgatcaaatcaaaacattgatctga
acctgctgaatgtgtgacgtcataattactgcttacaatttgcgtgtttt
gaaagtttgatgtgtgtactccgtcttggtggaattttttaatggcatga
aaatagaatatgcaatgtctttaagaacaaatttctaaaaggcttttgtt
gttctgtaaatatttctttttggtttaagaaattccatcttttactgttc
taatgattataatatttctttataagatgctttgttgtctttttaatctt
tgtgtaaacttgcatatgttttgcatattttccaactaaatccaaccatc
AGCAATTCTGACCTTCCGaatattcctatctctaaagataGGTGTCAAAA
TTAAAAGGGGGATGTAGATACCGGGTGTGTAAAAAAAACGCCCCTATTTT
ACAATCTATGACGTACATTTTTCTATTCAGTTGAACggcttgaatttttt
tgtgagtaTTGTACGTTTTATTTCTAAACATTTCTAAAAGTTTGGCAAAC
TTACCTCAAATGAATTTAATAAAGTTATGAATATTCTCGCAAGATCAGGC
GAacccgaaaaaattttttgtttccggtccaccggccgggtgaaaattta
ttttgtcgtcacccggccgcattttttttttcgtacatcatcgttagggt
tagggttagtttgtttatttggaaaactttcgtgaatcagtttttgaggc
gtgtgatttatcgcacgtgatattttatattctactgtaaaatgcacgcc
tagaaatcacttggaatgaaggttttatcctgatcattgttatagaaact
gatagaaatgaaattttattcatctcaaactaaaccctgcattgtttttg
ttaattcttgcttgcaactcaaTTTTTAAGtatgttttttttcatataca
acttggtttttataaaagaatcatgctgatttgtgagtaaaataaataga
aacattcacaaagtggggacttttcagtaagtaaacagctttgtttttat
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTCATTTTAACTTCtacgagtgctttaaaaaatcgagt
tttgggatcgaaatttagcaaaaaaaaattttttgcggccggccgggtga
gtgttttttttgtcacccggtggaccggaaacaaaaatatttttagggtt
cgcCTCACTACTTTTTATGTTGTTCACAGAAGCAATTGATTGACGTCAAA
GAAGACGTCAAACCTTTACATATTCTAGCTTTCCTATCAGCTGTAAAAAC
CGTTTTAAAGTGAAATTGAAGTTTAAGCTAGATGTAGAAGGGAATATTCC
TACtaaaccaaaaatttttaatgtcaaacttatcttgttttcaaattcaa
gGGGTTTTGGGAATCTTTTCGCAGTGTTATCGTAACTTCTCAAGGTGTTC
AAGGCAATGTAAAGAAAGCATTTCTtagcaaaacaaattttcatcaattc
gTTTCATTTCCATTATTTAATCGATCATATTATATTATACAAGCTCTGTT
CTGCTTCTTTAACATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNGCTCTGTTCTGCTTCTTTAACATTTTGCAAAACAGTTG
AACTGAAAACCTAAGGATTTTGATGTACAAAAGGTAATAACATCGGTTCA
TTTCTGCACCATTGAGACaatttgaaagtatttttttgtcGTCGCAATTG
ACGTTAAAAAATGGCTTGGTTGGAACTAGCTAGAATCTAACAAATATTGA
CCTTGGAACAAAACTTAacctatgaaatgaaaaaatgatgCCATTATAAT
GTTTTAAAAGTAGCGAGACAAAATAAGAGCGTAAAAACGAAGCGTAGTTT
AGTTCCTTGTTCGATATGGGAAAATTTAACTATGAAAATCTGTGaacaat
gaaaaattgacctACGTCAGCGAAATTATTATAAAGTCACTTTAAAATGA
ACATacaaatgtataattttcaccaagggtaaaaaattaaattttaaatc
gtccctaaaaatttcatttatctttgttcaatagaaatttgtacgccaaa
aatcgaaaaataggcGCGTTTTTTTTACACACCCGGTATTATATGAATTT
ACAGTACTTGTCTTGTGCTCAAAGGAGAAATCAATGCTCTTATTTTCTGA
GGGAAAAAAATGActtgtttgtatttttgataaaggaaaatgactttttt
cTTACTTGCGAAGGAAGTTGACTTGTTCTGTAtgttcaaaggaaaatgaa
cttgTTTTGTAGTTTCAAAtaccttttttgtattttctatgACAATTGAA
TTGTTCCGTATTTTCAAAGGGAAAAGATTAGttctgtattttcaaaggaa
attaaCTTGCTCCatatattttatgttcaatgaaaaattaaggctctaat
ttctgagaaaaatgacttgtttcttattttcaaagGAGTTGACTTGTTTT
TTAGTTTCAAAtaccttttttgtattttctacgACAATTGAATTGttccg
tattttcaaaggaaaaagacTAGttctgtattttcaaaggaaaaagactt
gttttgtattttcaaaggaaattaaCTTGCTCCatatattttatgttcaa
tGAAAAATCAATGCTctgatttctgagaaaaatgaCTTGTTTCTTACTTT
CAAAGGAAGTTGACTTGTTCTGTATGCTCAAAGGAAAATAAATGACTTGT
TTTGTAGTTTCAAAtaccttttttgtattttctacgACAATTGAATTGtt
ccgtattttcaaaggaaaaagacTAGttccgtattttcaaaggaaattaa
CTTGTtccatactcccaaaggaagttgaCGTATTCTGTATTTTCATTGAC
CTTTTCtgtattttttaagaaaaatgagttgttttgtatttttcacaAAG
GAAAATGACTGCTCTATTTTCAATAATAAATGACTTTTTTCATACTTAGG
ATAATGACATGTTCTGTATTCTTAtgtattttgaaaggaaaatgacttat
ttttgtACTTTCAAATACCTTTTCCGTATTTTCTATGGCCATTGACTTGT
TCCGTAATGCCCAAGGAAGTTGATTTGttctgtatttaaaaaaaaattga
cttgttCTGTATTTTCGGAGGACATTGACTTTTTctgtattttctaagga
aaaatgAGTTGTTTTTTGATAAAGGAAAATGACATGTTTTGTACTTTCAT
ATACCTTTTCcgtattttaaaaggaaaaaggCTGGTaccgtattttcaaa
ggaaaaagacTTGTATAgtattttctaaggaaattAATTTGTATGttaat
tttatgttcaatgAAAAATCAATGCTCtgattttctgagaaaaataaCTT
GTTTCTTACTATCAAAGGAAGTTGACTTGTTCTGTATGCTCAAAGAAAAA
TGACTTGATTTGTAGTTTCAAatacttttttgtattttttacgACAATTG
AATTGttccgtattttcaaaggaaaaagacTAGtttcgtattttcaaagg
aaaaagacttgttttgtattttcaaaggaaaataacTTGTtccatactcc
caaaggaagttgaTGTGTTCTGTATTTTTTTAAGGATGATGAgttggttt
ttatttttaataaaggAAAATGACTTTTATGTTCAATAAATAATGACTTC
TTTCATACTTTCTAAGGATACTGACATGTTccatatttttatagaaaagt
gACTTGTTCTGTATGTTCAAAGGAAAATGACTTGTTTTGTACTTTCAAGT
AccttttttttagtattttctaCAGCAATTGACTTGTTTTGTATAAAGGA
TATTTATTAACTTGACTTTTCTCTATATTTGATAAAGAATTACTTCTTTC
ATACTTTCAAAGGAAATGACTTGTTCCATATTTTCTACGGAAAATGACTT
CTCCAATGTTAGGGAAACCActtgttttgtattttctaaGGAAGTTGTTT
TTGTTCCATATTCCAAGAAGAATTTCTGTATTCTCAAAGacagattttta
gatttttaaggaagatttcatattttcaaaagaaaatgatgacttcaaag
attttttaatgGAATTTTAAGTTGCtctttattttcaaaggaaatgaTTT
TTCAGTGTGTACATAATACATGGTGAGTGGTGCTTtatttgtatcttttt
tataTCTGTATAGGTGATTGTTACTACCTTTTACCGAAGCGAAAATATGT
GGTGGGAAGGAAAGGTTTGTGATTCCTTACTATTTTTCTATTATatctat
ccgcagacacgtgTTTCATTCTTCGCAAGTGCAGCTCGGGTAAGCGAGCA
CAGACTGCTGTTGTCACTagagtgctcaaaacactaagTATTGAGCTTTG
CATAATCGTTTGTAGTAAACGGAGAAGCAGAGCTTGCTCCTCAACTGAAG
TTCTGACTATAATACATTATCcgcagacacatatttcatctGTATTGGAT
TTCGTCTGTATGTATTTTtctattataaaaataattgaaaattcgCATCT
TTTGTCCACTGTGGTCTTAAACATCAAATTAAATTAGCTGATTTTTTCCT
GAGTGTGATTAATTACATGCGtctcgtgccctcgtgggtcgtgccttcgt
gcctcgtgcgtcccgtgccctcgtgccttcgtgccctcgtgggtcccgta
aaaaattacgtgggtagttcgtgggtcccaaaaaaaattacgttttaCAT
TTTACAAACACGAAGAAAATTACTTAAAATAACTCCTATTATActtatct
ttgaaaaaaaaattactttaaattttttttttttaaataaaagcacatgg
tttgACATATTACGAGACACTCGCGTGTGGGTACGAGtgaaatttgaggg
cacgtggTCCAAGCgtgatttaaaattaaaaaattgctgATCTGGAAGTT
GATTTTCCATGTGGTTAAGCTCAGCATAAAAGGAAGTCCCGAACGAAGTA
ACAGTTCTGAAAGTTGATAGAAGGCCCGGGGTCTAATACTTGTCGATCGA
CGGAAGTGTGCCTCTAAAGCTCGAAAATTGGACCCTGCTTGGGACtcatc
ttttcaaaaaagtgaccCAGGCTGGGACTTAAAGAGGAATATTGTTCTCC
TTAAAGCAATACTTCGAAACAAGCAAAACTAAATAAAGATCTTTTCTAAT
TGGatgaaaaaggagaaaaatgtGAGACGCATgctttttacttttcatca
actggctttcttttttattataagtgatGAATATAGTgttaattataaga
actttctgaAAGAGGCAgggatttttaaatatttaaattgaAGTTTGGCA
TTAGAAATCCTCTCATATCTCAAGCATCACACTGAaatacaacttgaaat
tttgcacaaagatagtcTGATAGTACCATGTTTCCCTagtataaaaattt
ttaatattcaatgtcaattatttttggaaatttgtattcAAAAATGGTGT
TTTCATTTTGGCGAGATCGTATGTTGTCTCAAACTATAGCTTTAAGGAGA
ACAATAACCGATTAAACTATCAAATTTATCCCAACAAATTCTCCAAAGAA
GATTCCACACAATTACAAGGACACACGTGACTACTGAACACACAAATCat
tttctggacccacgaaatCGTTTTCCGGACTCACAAAATCAtcttcagga
cccacgtaattttttttcaggacccacgtaattttctCAGGACCCACCTG
CCACGTTATTCTTTCAGGACCTATGTAATTAtttaggacccacgtaattc
TTTTCAGGACCCACATAATTCTTTTCAGGAtccacgaactacccacgagg
gcacgaaggcacgtgaCGCACGAGGGCACGTGACGCACGACCCAAGAGAG
CACGGGACGCGCGTAATTAATCACACTCATTTTTCCTTATTGACTTTAAC
TTCTCTACTTctttatgaatttatttttatttttcagattgtGATATTGT
TATTACTGGAGATGCTTCGATCAGCAGAAAGCACTGCATCATTGAAGTCA
CGGTAAGCTTTATACCTTTTAATTTTGGTGTACTTGTTCAATGGGAGctc
aaaagaatatttaaaaactttttgattctTTGATACTTATCTTCTGAGTC
CTGAGAAAATcttatacatatttttttaactcaattattttcaaaaattg
agataTTTCACATTCTGAAAATGAGTCTTTGCACCTTTACTAGATAACCG
AAAAATGAAACTAATAATAGTAGTTCTATTGACTAGAAAGTCCTGGAACA
ATTCTGAAGAGGGACCTAGTATTTTTATCAGAATGTAGAATACTTAAACC
TATCAAACAATTAATAACGCTTGAATAATATGTCTACCACACAAAATTTT
CGCATTTTTAGTCGAAGCTTTATGCCCTTTAATTTACAGGTATTTTCATG
TTAGCTTTGCTTTTATATTCAGGAACTCGATGGCCCTAATTGCACCTGCG
TCATATTTACCGACACTTCAAAGACAGGCaccaaaattaatgacgtcaaA
CTCAAATCTAAAGAGGAAACTGAAGCTCACGATAACAGTACCATTGCGTT
TggtaaaatgaaatttcagtaaGTGGGATATATTGTTGTTATATTTTTAC
AAACTCTCTCCACTTTGCATTTTGCGCCATGTCAGCCAAATGTCACTCCT
AGGTCAAAAGACATTGATGTCAATGTTTGTATGGATATACTTTCAATCAT
TTTGTCGCAAGCTGTCAATATAAGTAATGGACCGTCTATGCAAAAAATCG
ACTGTAAACAATATTGACGGTCAATATGTCAATTTtagttttcaataaaa
ttgatggACAGtcaatataaattttttttttctcgataatTTTTATTTGA
CGTTCAATAAAACTTGCTGAAAGTCAACgaaaaacattgaacatgggaaa
ctttaaaataacttttaccccctggaaaaataaaaaaaagctcCTTTAAA
TCCCCGGAAATTTTCCCGGGTTACCCTCTTGGATAGTTCGTCCACTCCAT
GTATGGATATAAGATAGAATCGTCTAATTATTCGTTAGAGCTGCTCCTAG
ATTTGTCGTGTTGTTACCATTACCAGGTTTTTTAAACGTAATCTTATCAA
ATCTGTCTCACTCCACTTAAACGATATTGGAGGAACAATGTATGACTCAA
ATGAGAGGATTATAATTTGTAGAGGCTTTTGTTTTGTACCATATTGCCCA
CAAGATTTTAGTATatataatgttttttcttttagacTACGACATCAAAA
GTATTTAGTTGTACCCTCCTCAATAAAGAAATCAGAACAGAAGCAACTTC
TAGAGCCGGTTTCTAAACTAGGTACACAGTATGATATTATTTCGTTTAGA
TGAGTTATTGgcgttaaaggttttattctcaacttcaattgagctagaat
ctgacaatgtatgtatgtgtgtgtgtctgtccgaaaactttggggcaggc
tggagacttggctgaaatttggcacacttgttccttgggtgaatatctgg
ggggtgtttttttcattttttgaaaattttcatttttaagggtgtggtca
cgagttttcaccaaaacgaggctaaaactttggggcaggctggagacgta
aaaaatggtcggatttggctgaaaattagcacacttgttccttgggtgaa
tatatggggtttattttttatttttttatgaaaattttcatttttaaggg
cgtggtcacgagtttttgccaaaacgaggctaaaactttggggcaggctg
gcgacttcaaaaatgatcagatttggccgaaattttgcacacttgatacT
TGGGCGAATCCCTGGGGacgtttttttcattctttcaaaatttccatttt
caagggcgtggtcacgagttttcgccaaaacgaggttAAAACTTTTAGGC
AGGCTGAGACTTCAAGGGCGAATCCCTCAGGGtggttttcattattttaa
aatttccattttaagggggtggtcacgagttttcgccaaaacgaggttAA
AACTTTTAGGCAGGCTGAGACTTCAAGGGCGAATCCCTGTGGGtggtttt
cattattttaaaatttccattttaatGGGTGGTCTCATTcattttttagt
tgaaattggttacaattttacaatttggcctacgaatgatttaaaaacac
tgaagttgagcccagtgcggttagcacgttcgacagtttttacataagtg
ttcacgtttcatatcagacacatatttcatatcacgACGGTGtttcccta
ttgttatattattcttgttttttcctctttctgacaaatcttgctccaca
tccgtgtcaattcaatgtgaaaaggcttgtaaatttaaattgaactaaaa
aaaacgAGATCACtcctatttaaaaacaaaacctttagtgctttattgaa
aataattcttTGACAGGCTTTAAGCGTATCAGATTCCTTCATATTGATGC
CTTCCTTAGAGCGATTCACAGAGTGCCGGCCAATCTTATATAGTATAATA
TAGTATTGTTCCTTACCTATTACATAAAAGGTCTTTCATAAACTTGGTCA
TTTCAAATAAATGTATTCTCTCAAAGGATTTTAttcctttaaaaaatatt
aaaaattaaaCTATATTATTGCAGGTCTGAAATTATTATTTCAacaacga
ggcaagtgatgttgaTGAGGAAATGTTACGAGAAGATCTATCCCTCCGCC
TATTCAATTATGATTCGTTTTATCTTTAGGGGGAAGGCTCGTCAAAGAAT
GGAATGCAGAAACGACACATCTTGTTATgaccaaaattatttttacaata
aaGGTAAGAAGTTGGTAGAGTTTTTAGATTTAATATTACATCAATATAAG
GAAAATAACATTAACTCTTaggttttattttaatgaccaaataTTTTCTA
GGTTTCTTATATTTGGTCCATCAACATTGGTTTCCAATATATATTGGTAT
TTTACAACCTTGTTCCCGCATATTATCGGCTTTTTTATACCTACTGATAG
CGCCAGGTAGCGTATTGGCATCAGCCAataccagggtattctctggcgtc
catcaatAACGTAAATTAAGCgagggatacacggggacgaggttgggtaT
ATCCTGCTTATCGGCGTGCATAATAATGTTGAACATGTTTTAATGAATAA
TTTGATAATCATAATGTTTTATATTCCCATTTCTTTATAGGTTGTGTACG
CTCTTGCTTGTGGTAAACATATCGTCACTCCAAAGTTCTTTGAAGATATT
TTGGATTGCTGCGATAAGAAACTTGGCAAAAAACTCCCTGATGAAAAGAA
GTAAGCTTTCGATGTCTGCAATTTTGTTGTTGAACCTGAAGAGAACGTAT
ACTTTCTTGTCTTTGGGGTTTCTTGGGAATGCNTTGAACCTATAGAGAAC
GTATACTTCCTTGTCTTTGGGGTTTCTTTGGAATGTTGTGCATGATGTGA
AACGAGGACGAGGATATTAAAGTGTATTTATTAAAGTCATTAAAAAGATG
ATTTTATGGTATTTTTTTGTTAGCAGGATACTAACTACAGACAAGTTTTC
ATTCATAAAACGGTTTCTGTTTGCTCCTTTTCCATTATATAAACTCGAAC
GGCTTTCTTTGAGACTTGACTGTACGTGATGAACCTGTTTGCGTTTCTTT
CAGTTATTTACCGGTGATACAAGAACAATCGATGATCAACATGAATGCGT
TGTTCTATCCTAATCAAGAACGTAGTCAGCtgtttgttggaaagatattc
gtTACCCTGTCTGCAACTCAGGTAAACATTTCTGGGACTGGATGAAAAGC
TCTACAAAATACCTAACGAGACTCTTTCAATAAAACAGAAGAATAACAAA
GAATCTAAAATTCCAAACAAAAACCGTCCCCCTACGAGATAACTAAATAT
TTTGTGTGACCTATTTTGTATCACAATTTGCCTCGTCGCGCgtattgatt
ttaatttttaacaatagacgatatcggcttaacatgaaaactcagatttg
atccccgagaattccccacaatgctttgcgcggaaaataTTTCACCGCGA
ACTTTTTTCCGCgtaaagcattgtggggaattctcggggatcaaatctga
gttttcatgttaagccgatatcgtgtATTGCATACCTTCCGTCAACTTTC
TTCATCTACCATCAACCCCGTCAAAATCGATAGAAACAGAAAATACTCTT
AGGTTTGAACGAGCTTCAGACCCGTCTAGAACCTGAAAGAAATCATACTG
AAATGATAAATTGTAACGGTTTATAGGATGTTAAAAAATATCTTGCATTG
TGGAAAGATTTTGcctgaatagaccttttcggagattttgatttttctaa
aacagcgatgcattttgggattgtttcgggggtattacaatagaactccc
tcgaggaattcctaagagatttctattataatacccccgaaacgatccca
caatgcatcgcttttttagaaaaattaaaaactccgataagatctatttc
aTAAATCGACTGAGAAATTAGCGTATCGAGCGTTCGatactgttttattt
ttgtagCACTCGCGGTTGAAACATGCGATCCAGTATAGTGGTGGCTCAAT
GATTTTACAAGAGAGTAGAGAGCAGAAAATCTTGAAAAGTATATCAACCA
GTCAAACTATGGTGATGGCTTTGGAGGGCCATGAAGAAAGATCACTGTCC
AAAGATCAATCAAAGTGGATGAAAGAGTTACAGAATATGCTTTCTACGTA
AGTTGTTCTTACTATATTTGATTCCCTCCTAAAACGAACTTGCACTCGTG
TTTGCTCTAACTACAGAGGTATCTTATAAGAATTCCGTAGAGAATTTCCC
CGCTGCCCACTATTTCTCTCATAGTTATCCCCTTTTGACATGTCCCAGCT
TAGATGCTGATAGGGACCAGGTTTACGCTTTTATGCTTTGAGTCCATGCC
ACTCAACTGGAACGATTGattattttatttgatattcAAGTCATGGCAGA
CCTGGCTGTAATTACTGTATTTAATCTCTCGATTGTTATCTATTTCAGTC
ATGGATTGCGTGGTATTGGAGAATCTGAGATTGGATTGGCCCTCATCAAC
AATTCGCTTGAGAAATATTGCAATCCTGCTTCTAAAAATGGTATGGATAT
TGTTATTAAATTAGTTAAATAGGTTTTTAATGTTATGTTAAGTTACTtaa
cttccgccattatggaagtaaacgttcgatttgcgtaagggatcGTCCTT
ACAGATTCGAacatttgcttccataatggcgtaAATTACCTAGCtcaaca
aaacatgaaaaaaaacgAAGATGGGTTATCTGGAAGGTCAACTGATGCTT
ATCCgggggtaaaacccgttgtccgggggtctaaaagtcactttgtccgg
ggggtaaatcactgaaaattattATACCCTCtaacccccatattcaattt
ttttctggaaaagcccaatacaaTCATAATATTTACCATGCCAGCCGACA
TGAGATAAGAGGGTTAAAGGAGATTCGATTTCATTAAAATAACTCAATCA
AGTtagttgttttaatttttttgaatttttatttttagtgaaCGTATTCT
GCACGACGACCGATACCCAGGCACTTTCTCAACAACAATCACAATTATCT
GAGATGTCTCAAGTTATGCTACTACCGATCAGTCACAATaaggttttttc
aatttttccacAAGCCTCTCTAAACTACAATCCCACACAAAATATCTGAG
ATAAAGTGGATTTCTAAGATTTCTAAGCGCGTTAGATTagagttggaaag
tagagttttaattctcacccgaactttaaattctgaaaaacgttaaaata
cactaaagtgtagaaaaaaaaatctcacacGTAGTAGTGTCGCCTATAAT
TTTAACTTTTCCTTTTAACTTAATATTTCTCAAAGCAAGCTAAGTGGCTT
TAATTTCCATTTTTATTCTTTCAGCCCAGTTCTTCATCAACAGAAAGCAA
GCGGTAGGTTCCTTcaccaaaaaatgtttttttttgttttttttactggA
AATATTCTGTAATAGTAATATATGGGACTAATAAACTGGTTTTAAAAATC
TTGCGCGTCTTCACAGTCATAGTGAAAAAGGGTAAATTTTCAAACCATCG
TATAATTGTAAATATAACTTGCATTACTGTCCCGGGtggttcaaaaaaaa
acttcgaacGTTTGTTGGCTTCTTGTAACCGAATAATTTTATTGAACAAC
CCTGAAAGTAATTTTATTAGATATCGAGGTATAACTTTTTATATTTGGTT
GATTGGTTTTGGATTTATAGCTTTACAAAggcaaaattcacttttcaaaa
tgtacaaaaacacgtcaaaaaagAGGGAAGCCAACAAACGTCCGAAGTTT
TTTTGAACCATCCGGTAAATACAGTTGACGGTCTCTAATTCGACTATTTG
ATAGGCTCCCtcattcgatgaaatttaaagtccccgtcaacaagaaactc
tcataaacgacgatTTTCATCGTATAAGCTtccttaaggccggtctccac
ttgcgcgcgcttcaatcgctcttcttcgagcaaagcttccacgctattgg
tcaaaagaaaaatgaagcaactcccaTTGGTGGGATATGACGTAACGATc
gcgcgcttgaaaaaaaagttgaaatacattcaactttttttccaagcGCG
CGCTgcgtttttatgacgtaatcttttctccaagcaaaaatgattgaagc
caaagttgcgatcgcagcgcgcgatAGTGGAGACCGGGCTTTactcgatg
aaaatccaattccccttgaagatcgaattagagagcgtcaactgtatatt
atAAATGACACAGCCGACTGACTATCCTTCCTTTCTTCTAGTAAACGAAA
CGAATCAGAAGAAGACGACGCTACATCTAAAAAACCTAAAATGGTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045235XLOC_045235Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072909-exon-scaffold_86-1491911889:661799..661969TCONS_00072909-exon-scaffold_86-1491911889:661799..661969Clytia hemisphaericaexon
TCONS_00072909-exon-scaffold_86-1510915933:661799..661969TCONS_00072909-exon-scaffold_86-1510915933:661799..661969Clytia hemisphaericaexon
TCONS_00072909-exon-scaffold_86-1575043694:661799..661969TCONS_00072909-exon-scaffold_86-1575043694:661799..661969Clytia hemisphaericaexon
TCONS_00072909-exon-scaffold_86-1491911889:668212..668262TCONS_00072909-exon-scaffold_86-1491911889:668212..668262Clytia hemisphaericaexon
TCONS_00072909-exon-scaffold_86-1510915933:668212..668262TCONS_00072909-exon-scaffold_86-1510915933:668212..668262Clytia hemisphaericaexon
TCONS_00072909-exon-scaffold_86-1575043694:668212..668262TCONS_00072909-exon-scaffold_86-1575043694:668212..668262Clytia hemisphaericaexon
TCONS_00072909-exon-scaffold_86-1491911889:669986..670050TCONS_00072909-exon-scaffold_86-1491911889:669986..670050Clytia hemisphaericaexon
TCONS_00072909-exon-scaffold_86-1510915933:669986..670050TCONS_00072909-exon-scaffold_86-1510915933:669986..670050Clytia hemisphaericaexon
TCONS_00072909-exon-scaffold_86-1575043694:669986..670050TCONS_00072909-exon-scaffold_86-1575043694:669986..670050Clytia hemisphaericaexon
TCONS_00072909-exon-scaffold_86-1491911889:670471..670616TCONS_00072909-exon-scaffold_86-1491911889:670471..670616Clytia hemisphaericaexon
TCONS_00072909-exon-scaffold_86-1510915933:670471..670616TCONS_00072909-exon-scaffold_86-1510915933:670471..670616Clytia hemisphaericaexon
TCONS_00072909-exon-scaffold_86-1575043694:670471..670616TCONS_00072909-exon-scaffold_86-1575043694:670471..670616Clytia hemisphaericaexon
TCONS_00072909-exon-scaffold_86-1491911889:671284..671369TCONS_00072909-exon-scaffold_86-1491911889:671284..671369Clytia hemisphaericaexon
TCONS_00072909-exon-scaffold_86-1510915933:671284..671369TCONS_00072909-exon-scaffold_86-1510915933:671284..671369Clytia hemisphaericaexon
TCONS_00072909-exon-scaffold_86-1575043694:671284..671369TCONS_00072909-exon-scaffold_86-1575043694:671284..671369Clytia hemisphaericaexon
TCONS_00072909-exon-scaffold_86-1491911889:672778..672851TCONS_00072909-exon-scaffold_86-1491911889:672778..672851Clytia hemisphaericaexon
TCONS_00072909-exon-scaffold_86-1510915933:672778..672851TCONS_00072909-exon-scaffold_86-1510915933:672778..672851Clytia hemisphaericaexon
TCONS_00072909-exon-scaffold_86-1575043694:672778..672851TCONS_00072909-exon-scaffold_86-1575043694:672778..672851Clytia hemisphaericaexon
TCONS_00072909-exon-scaffold_86-1491911889:673239..673348TCONS_00072909-exon-scaffold_86-1491911889:673239..673348Clytia hemisphaericaexon
TCONS_00072909-exon-scaffold_86-1510915933:673239..673348TCONS_00072909-exon-scaffold_86-1510915933:673239..673348Clytia hemisphaericaexon
TCONS_00072909-exon-scaffold_86-1575043694:673239..673348TCONS_00072909-exon-scaffold_86-1575043694:673239..673348Clytia hemisphaericaexon
TCONS_00072909-exon-scaffold_86-1491911889:673702..673819TCONS_00072909-exon-scaffold_86-1491911889:673702..673819Clytia hemisphaericaexon
TCONS_00072909-exon-scaffold_86-1510915933:673702..673819TCONS_00072909-exon-scaffold_86-1510915933:673702..673819Clytia hemisphaericaexon
TCONS_00072909-exon-scaffold_86-1575043694:673702..673819TCONS_00072909-exon-scaffold_86-1575043694:673702..673819Clytia hemisphaericaexon
TCONS_00072909-exon-scaffold_86-1491911889:674605..674795TCONS_00072909-exon-scaffold_86-1491911889:674605..674795Clytia hemisphaericaexon
TCONS_00072909-exon-scaffold_86-1510915933:674605..674795TCONS_00072909-exon-scaffold_86-1510915933:674605..674795Clytia hemisphaericaexon
TCONS_00072909-exon-scaffold_86-1575043694:674605..674795TCONS_00072909-exon-scaffold_86-1575043694:674605..674795Clytia hemisphaericaexon
TCONS_00072909-exon-scaffold_86-1491911889:675097..675188TCONS_00072909-exon-scaffold_86-1491911889:675097..675188Clytia hemisphaericaexon
TCONS_00072909-exon-scaffold_86-1510915933:675097..675188TCONS_00072909-exon-scaffold_86-1510915933:675097..675188Clytia hemisphaericaexon
TCONS_00072909-exon-scaffold_86-1575043694:675097..675188TCONS_00072909-exon-scaffold_86-1575043694:675097..675188Clytia hemisphaericaexon
TCONS_00072909-exon-scaffold_86-1491911889:675637..675740TCONS_00072909-exon-scaffold_86-1491911889:675637..675740Clytia hemisphaericaexon
TCONS_00072909-exon-scaffold_86-1510915933:675637..675740TCONS_00072909-exon-scaffold_86-1510915933:675637..675740Clytia hemisphaericaexon
TCONS_00072909-exon-scaffold_86-1575043694:675637..675740TCONS_00072909-exon-scaffold_86-1575043694:675637..675740Clytia hemisphaericaexon
TCONS_00072909-exon-scaffold_86-1491911889:676940..676995TCONS_00072909-exon-scaffold_86-1491911889:676940..676995Clytia hemisphaericaexon
TCONS_00072909-exon-scaffold_86-1510915933:676940..676995TCONS_00072909-exon-scaffold_86-1510915933:676940..676995Clytia hemisphaericaexon
TCONS_00072909-exon-scaffold_86-1575043694:676940..676995TCONS_00072909-exon-scaffold_86-1575043694:676940..676995Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:661799..676995 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.689746	0	0	0	0.695593	0.253378	0.385708	0	0.00415586	0.500662	0	0	0	0.124327	0	0	0	5.94445e-07	0	0	0.210013	0.240409	0.50489	0	0	0	0	0	0	5.01636e-05
Blast
[Close]
BLAST of TCONS_00072909 vs. Swiss-Prot (Human)
Match: NBN (Nibrin OS=Homo sapiens GN=NBN PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.857e-41
Identity = 107/317 (33.75%), Postives = 163/317 (51.42%), Query Frame = 3 
Query:  165 ATGDCYYLLPKRKYVVGRKDCDIVITGDASISRKHCII----EVTELDGPNCTCVI-FTDTSKTGTKINDVKLKSKEETEAHDNSTIAFGKM--KFQLRHQKYLVVPSSIKKSEQKQLLEPVSKLGGRLVKEWNAETTHLVMTKIIFTIKVVYALACGKHIVTPKFFEXXXXXXXXXXXXXXXXEKNYLPVIQEQSMINMNALFYPNQERSQLFVGKIFVTLSATQHSRLKHAIQYSGGSMILQESREQKILKSISTSQTMVMALEGHEERSLSKD-QSKWMKELQNMLSTHGLRGIGESEIGLALINNSLEKYCNP 1091
            A G+ Y LL   +YVVGRK+C I+I  D SISR H ++     VT L   +   V+   D SK GT +N+ K+++           I FG    KF++ ++  +   S +  S +  L + + +LGG  V  W  E THLVM  +  TIK + AL CG+ IV P++F + L   + K        +++ P + E S+ + N      QER Q+F GK F+ L+A QH +L  A+ + GG   L     ++         T V+       ++L  D Q KW++ + +ML   GLR I E+EIGLA+I  + + YC+P
Sbjct:   11 AGGEPYRLLTGVEYVVGRKNCAILIENDQSISRNHAVLTANFSVTNLSQTDEIPVLTLKDNSKYGTFVNEEKMQNGFSRTLKSGDGITFGVFGSKFRIEYEPLVACSSCLDVSGKTALNQAILQLGGFTVNNWTEECTHLVMVSVKVTIKTICALICGRPIVKPEYFTEFLKAVESKKQPPQI--ESFYPPLDEPSIGSKNVDLSGRQERKQIFKGKTFIFLNAKQHKKLSSAVVFGGGEARLITEENEEEHNFFLAPGTCVVDTGITNSQTLIPDCQKKWIQSIMDMLQRQGLRPIPEAEIGLAVIFMTTKNYCDP 325
The following BLAST results are available for this feature:
BLAST of TCONS_00072909 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NBN2.857e-4133.75Nibrin OS=Homo sapiens GN=NBN PE=1 SV=1[more]
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