TCONS_00072891 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072891
Unique NameTCONS_00072891
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3266

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072891 ID=TCONS_00072891|Name=TCONS_00072891|organism=Clytia hemisphaerica|type=transcript|length=3266bp
cTGAAAGATAaaggttttgagaaaaattatagcattccATCGTGACGTCA
TGACTTTTATAAAAGGCAAGCTAGAAACAGAGCTGAGATACAGTTAAATA
ACAGTCAACCGTTTTTAGCAACCTTGCACAAGAACCTAAACAACTTTAAA
GgTTCAGCCTTCACTCAACCCACTTATTTCGAGCTCTGCAATTACGACAA
ATGGCATccttatcaaaaaatatttctgtcACACATGGCAATTTTGAAAC
ACTCCCAAATAAAGTAAAGGATTTTGTCgtacaaaaaagtgaattatgtC
AGCCAGATTTTCTCCACATTTGTGATGGCTCAGAAGATGAGGCACAAAGC
TTAGCTGATCTTCTTGTAAAAAATGGAACTgcaagaaaattggaaaaaat
ggataATTGcTATGCTGTCCGTACTAATCCAGCTGATGTTGCACGTGTTG
AATCAAAAACGTTGATCTGTACTGAAAATAAACATGATACTGTCCCCCAC
ACCAAAGATGGAGTTAGATGTTCAGTTGGACAATGGACTGAGCCTAAAGA
AATGAAGGAAAAGCTCCAAGGATTATTCCAAGGATGCATGAAGGGAAGAA
CCATGTatgttattccattttcaatgGGACCTGTTGGCTCTCCTTTGTCC
AAAATTGGTATTGAACTTACTGATTCTCCATATGTCTCAATGTCTATGGG
TGTTATGACTAGAATGGGATCAAAAGTATTGAATTCTCTGGGTGATGGTG
ATTTTGTCAAATGTTCTCACTCTGTTGGACAACCTTTACCTCTTGAAAAA
CCAGACCCATATAACTGGCCATGTAATCCAGAAAAGACTGTTATCACACA
TTTCCCAGCTGACAGAGAAATCATCTCCTTTGGATCTGGTTATGGTGGAA
ACTCACTTCttggaaagaaatgttttgcTTTGAGAATCGCATCTGCTGTT
GCTAGAGATGAAGGATGGTTAGCTGAACACATGCTGATCCTTGGATTGAC
TAACCCACAAGGTGAAAAGAAATATGTTGCTGCTGCATTTCCAAGTGCTT
GTGGAAAGACAAACTTAGCTATGTTAACCCCAACTTTACCAGGATGGAAA
GCAGAATGTGTCGGTGATGATATTGCATGGATGAAATTTGACGAGGAAGG
TGTCTTGAGAGCTATTAATCCAGAATATGGATTCTTTGGTGTTGCCCCCG
GAACCTCAATGGAAACCAACCCACAAGCATTAATTGCTTGTCAGAAGAAC
ACTGTCTTTACTAACTGCGCTACTACTGATGATGGTGAAATCTACTGGGA
AGGTCTTGAAAAGGAAGTCAACCTTGAAGGTCGTTCAGTCACTGACTGGT
TGGGTAAACCATGGACTAAAGAATCTGGAACAAAAGCTGCTCATCCAAAC
TCTCGATTCTGTACGCCAGCTGGAAATTGCAAAGTTATCGATCCACTTTG
GGAAGATCCTAAAGGTGTCCCAATCTCTGCTATTTTGTTTGGTGGACGCC
GACCAGAAGGTGTGCCATTGATCTACGAAGCATTTAATTGGCAACATGGT
GTGTTTGTTGCAAGTGCTCTTTGCTCTGAAACGACGGCTGCTGCAGAACA
CAAAGGCAAAGCTATAATGAGAGATCCCTTCGCCATGAGACCATTCTTTG
GATATAACGCTGGACATTACTTTAAACACTGGCTGAGTCTTGAAGATGAT
AAGAAACATCAATTGCCTAAAATTTTCCATGTCAACTGGTTCAGAAAAGG
AGAAGACGGCAAATTCCTATGGCCTGGATTCGGTGAAAACTGTCGTGTCT
TGAAATGGGTTTTCGATCGCGTCGACGGCAAACACGGAGTCCAAAAATCC
ACCGTCGGATATTTACCTGAAAATGACGCATTAGACTTAAATGGACTAGA
TGAAGATTTAAATATGAAAGAACTAATGTCTGTTCCCACTGACTATTGGA
TGGAACAACTAGATGATATtgagaaatattataatcaacAATTTGGTGAA
GATATTCCACAACAATTATGGGATGAAGTACATTCTTTCAGGGAACGATT
GACAAAATCTCCTACCGCCGCTTAAATGTGTTATTTATTGGAAGATGATG
ATTGTTGTTGATGCTTTTTGTCCTTTTTAACcttatatttagaatttttc
ctACACCatttctgaaaaatgaaaaacaatttttatgatGTTGTAGTCAC
AATCGGACTTGTcattttcttcttattttcCTCATTTTACTGAGTTGGAA
TTGTCAATAAGTGTaaaatgattttacttttttatttagtgatcGTAAAA
CAAAATTACACTAAGAAAGCTAAGCTATGCACGTTGCTAATATACAATAN
tttacttttttatttagtgatcGTAAAACAAAATTACACTAAGAAAGCTA
AGCTATACACGTTGCTAATATACAATAGTATAGTAAAGAggactttttta
gttttagggacttgatttctttttaaagtgtttgttcgttttctttttgt
taACAGAATTTTTTAATTGTTCAGCTGTatttaaaaatgctattttatgt
ctttgttttattttgttatatctttatttttcagctttcttttggtACAA
TATACAGTCTTTTTTTTCGTTTATCTGTCACGGTATTATTTTTGTTTGGC
TAGAGAGATATTTATaagaaatattaaaatttaaatattatTATCATGTG
ATAGtttaacatttttgtaaacttcAAGTTTATAAGGGAGAATAATTTTT
TGTTACTTTGTATCATCTTATTTTAATGCTAGagtttatatttgttttgt
aATATTGACGTTTTTGAAGTCAGTAAAATACAacgttttcgaaaaaaaat
caacattgcTGCACGGTTTTATACCCCCTAATGAATCGTTCAATTTTTTA
TTAATATTTGCAGAATCaagatttcaatgtttttttccttttactCTTTT
CATCAGACGAATTgataagaaattaaatttttgcgtttaagagagaaaaa
aaacaaatagccAGAAAAAACATAGTCAGCGAAGATTTTTACCTGATTTC
AATATCTCGCCGCTGGCTCACCATAGGATAACGATGGATGGCCTCACAAT
ATTATTTcaaactaaagtctgttccaaaaatgACAGTCAGCACATTTTGA
TACATTGTCCTTGAAGGTGTAGAGATAAATTAATATACTGCTAGAAATAT
CGTTTTGAGTGGATTTCCacctttttaaaactttggaaCTTccctgattt
caaatatgtattcgga
Run BLAST on NCBI

transcript from alignment at scaffold_86:542317..552241+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072891 ID=TCONS_00072891|Name=TCONS_00072891|organism=Clytia hemisphaerica|type=transcript|length=9925bp|location=Sequence derived from alignment at scaffold_86:542317..552241+ (Clytia hemisphaerica)
cTGAAAGATAaaggttttgagaaaaattatagcattccATCGTGACGTCA
TGACTTTTATAAAAGGCAAGCTAGAAACAGAGCTGAGATACAGTTAAATA
ACAGTCAACCGTTTTTAGCAACCTTGCACAAGAACCTAAACAACTTTAAA
GGTAAGATTTGATGTAATTATTTTGCTAGATGGTACGTATAAGTAATAGT
GAGATATCAAAGTTTAAGTAGATAAAGAAAGAAAGTTGTGTAATTTTCGT
AAGTTATCTAGAGCTAAAAACAAGTCTTCTtgggaaaaattaaatactaT
TGGATAAAAAATACAACGcaaaaatttttccattttatcATGCTTCAGTG
GGCAAAACCTAAAAtaataagaaatacttcttcttTTTATGGAACCCCAA
AAATTCCAGGAAAATTGCACGAATTCCAAAATCAGTATTCAAAGCAAAGG
TTTCATTGTCACATAGAAGCCCAGTTTCGATGAACTTTGCAGAATTCTAC
CAGCATCTAGCACAGTAATCCATCTTAAACTGAAAATCTTGTGTGTACTG
CGCTTTAGCTTGTTCCAGCTTACCTTTTGAAAAGTTCTTTGAAAAAGATA
ACtagatatttcaaattttcaaatatgcTTAGGGAAGAGGAAAATTTGAG
GAAATTCAAAGGTACACAATTTTTCCTggaaaagttaaaaaacataCAGA
AAATTCTTCTAGAAAAATAGCAGGATAGCCGTATTTATCATTATCATTCC
CTGATTCAACTTAATCCCTTCAGAAAACTGTCAACAAAAATATTGTATGC
ATGGGTTCTCTGAAAAGATTTCTTTATAACTTCAGCCATAAAAAATCTAC
AGGTTGGCATGATCCCATGAAATTTATTCTTGTCtctctatttttctttg
ccTTGCTTTTGCTTTGCCTTTGCCTGCTTATTATTAATTGCATTTTTTAA
TAATTCTAGATCAATTAgataatttaaaaaagtataACTTTCTGCCTCCT
GACAAATTGCAGGGTACAAATTCCTGTAAATTCCAATTTTCACACATTGA
GCAAGACTCAGACACACTGGGTCCAGAAAGCTAAGCTTTATAAATAGGAA
AATGAGGGACACAAAAAGGTActtttgattatattttgattCTGAAGTCT
TTCCTATAACTGGATCATGTTAAAACTATGATAAACCATTGAtgcttttc
agaatttttcatgtaaattgaaaattttactttgaaaaattcaggcaaac
tttcaactaaaacCAAAAGTGTCATTTAGAAATTGAATCATATTCAGAAT
GGGCAAATTGGGCATGAAAAATCCAGgcaaactttcaactaaaacCAAAA
GTGTCATTTAGAAATTGAATCATATTCAGAATGGGCTTTTGTAGTGGCTT
GAAGTGGCTttagttttcaaaatatatattgTTGAGTATGTGACTTTACT
ATATGATTAATGAGATTGGATATTTTTGCTGGAGGTTAacttgttttttt
aaatcaaaaaatttccatggaaaatcttatttttagtttgcttttactta
cttttgatacttttgatggGTTTTTAGAGTCTCTCAATCATTCCATTTGG
ATTTTAGATGCCCAAAAAtacatttcattattttccctTTAGATTTAGGA
CATAATGTCACTGGAGATATTATGCAAAAAGAACTGATTCAAAAGCTTAT
TTACCATGAAATCAAAATCTTGTCCAAATCAAGAATATATTTTACAGACA
ATCGCTAGACATTTGTGACACTTTGTAAACTTGTTTGAATGTGCACTTTT
AAACTCGGTGTGCAGACGCTTAGTTATAAGTTATATGAAACACATTAAGA
TATTGATCTACTAGGCTATCTACTATGGAATTTGGAgtaccaaattttca
aaaagattttgataaTTCAATCACTTTTTTAACAACCCTTCGAAGACTCA
ATAACCGTAcatactttgattgttattaaTTAATTTCGATAAACTCAACA
CAACCAATTGATTACTTCTATAACTATTGATtacttaaagtctgtctcaa
tataatttgacaaaaaaggctataacttttgatagaattcaaatTAGATA
gcagttttgtgcttgttgagaagacaaacaggagtggaacattatcataa
agaaaaaattcaaaaaagattgaaaaacaaagatggaaatgaagaagaag
aaaatcaacttcttcaataattgtgcttataattatcattttcacacgag
tgattcTTTGACCTTAGAGCATCATTAATGTGAAaaacaatcttcaaaaa
aatttattttatccaaagatatagtccaaagtttgtcactgattgacttc
aaaaaccatcaaaaacaaacaaaaaagagcccttttttaagtcaaccagc
gacaaagttttaagctgtattttttgactgaagcaatattttgtgatttt
atttCGTATATCTATGATGTtctaaagattaaagaatttttaatatgaaa
atgaaaatcatagcattattcaacaagaagttgattttctactatcttat
ttttcatctttgtttttcaatttttttaatttttttcttttttgacagtt
tACAGTAGTGGAAGTACCTCGATTTTAAGCATGTTCAaaaagttcacaat
aacgactttctttttataacggAAACCAAACGAGTAAGAAAAAGTCAAGC
AACTAAATCTCAGCGCTCCGTGGTTGTGACGtagtttacaaaattgttaa
gatataatgacatactttttaacaacttttttctatgtcatttttgaagc
ctcttcGTAGGAGAATTTTATtacacttcatggcagattaaaaagacgat
tagaaaacgaaagcttcttcatttttcatttttgcatttaaggggaagaa
tgaaattttcagaagattatttatttgatatgaggattcccatttccgta
aaATTGCAATTCCTCATGGTTGTGAAATGgtggctatgggtaattccttt
gttcttttgccaTTTTCATTTGTTCTATGTGACGTAAAGATGCTTCACAA
ATCAAAGTATTTCCACTAACTGTTTGATAATATTCAACTCtgaaatatct
ttttaatgagCACAAAACCAATATCTATCAGAAGTTATAGCCTTGGTTGT
CTCTATTGCAAATTATGTTGAGACAAACTTTagataaccaattgattacA
TATATAGTATAGATgtctttaagaaaaaccaaaaacattgacctTAAAAC
CAAAGCACAATAAGAAGCAGCAGCAGCCATAAGAATAACCTTCAGTAATT
ACCCCACCATTTTGTGTGGGTTTCCCGAAGTAACTCATATCGTGCATTCT
GATTGATCGGAGAAAAACAAAGTGGTTTTCGCGCGTGATTTTTATTAAAG
AAGAATATGTTGAAATTAGAAagagatgtcgacattagaccaacttacag
taattaattagttattcaaaagacgaAAGACCGTCATGTTCCTTTATTTA
TATGCTAATGACAAATGAACAGCATGGCAGTGCTTGGAACCAAAACTGTT
GATAAGAATCTGCCAAAccaaacaatcaaaacaaaacacccCCACCACCC
ACAGTCcactttgaaaacaaaatttaaaaattgaatagaaaaccTTTTTC
ATCTTTGTGCCAGTAAGtccagtgaaaaaaaattttgtttctaaaaatgA
ACTCACAGCTCTCTAAAAATATTATctgttaaaagtaaaaaaaggaCGGT
GTGTAGTTATAGTTGGTAGAGTTATTTCCTCTCTTCTCTAACTAATAATT
CTCACTGAACTAAATTTCCTTACATTTAGTGGTGTTGTTTGCTGTTCATT
CATTACACATCCCTTACACTATATAAAGAggtttttaaaatctgaaacat
taaaaattttgttaagattttgactttttttgatgtTGATGTCGCTATCA
AAGATGGCGGGTTTCCCGCCagaaattgtaaacaaaaactaGCCTGTGAA
ACCTATTCCGGTCCTTGAAATATCACAGGAATAGAATTTTGGTTCggtaa
aataaatcaaaagaatttgataatGAGATTTCCTGATTTCATGAATGTGC
AAAGTTGCCCAGGGAATTTGATAAGCACGTTGCACTCAGTGGCTGGAGAA
GGCGACACAAAAATCactttaaactaaaattgctcGAGGTTTTAAAGTAC
AACAAAAATGGCACCATATGCTAAGCTACTCACAAGGTATACAATTTTTG
TTTACACCAAATTTCTcggaatttttttgcaaaatgaagtcattgcaaag
caatttaaaaaaataaattttactcGACTGTTCGATTCGATGAATTTGAG
GCTTTTGTAGTTTTTATTCCTTGACTCTCATGGACATAGATCAGCATGAT
TTGTTTATAGAACAAGGTATATTGTTTTGTTTGCAGTATAGTtgttaaaa
aagttttgtttgttttggctTATGACATTGTTTTTATTACAAACTTTCGa
ccttttgttcttatttattttGTGTTGATGGGACTTTTTATAGCAgtatt
tgactgaaatttgaaaCCTTTTATAAAGCACTCAATGCCTTTTTACTTCC
GCGTCTATAACAAGTTTTTAGATAGATTTATCTATTTTTGTGAGTTTTGG
ACGCATTCAACCGAAAATATAgaaacatttttagatttcttacTCCTAAA
CTAAATTATTCATGATCAATACAAGAGTTTCCAATCCCTATACAAATGAC
CTCTTTTCAATCTCTAAGCTATGATTCCTATAATATTTCTTGACTTCATT
CATCCCGTTTAAGGATTTGAATATGTCTTTTAAatacaaaatttagaaat
gtaAAAATGGCTTTACAATTAATGATAGGAACTTATCAGTTAGATTTAAA
TAGTTTTTAAAGATTAATGTCTTgcattaagaagattaaaagaCATTTAA
GAGTTTCTATTGCTCAAAACAGTTAGACTCACACCTTAATTTAAACCCTA
TTGTCAAGACACAAAAATTGAAATGCTAGAATTCTAAGTACCTTATAACC
AACCTATatgtaaaatagaaaatgaaccACTGAACTGACTTggatatttt
ttaattcaagggTTTATTTTATAGATAAACTTGGCACTACATTAGACATT
CCCATACTTTCCCATTAATTCAAAAGACTCCTCAAAATCAAAAGCgtgaa
aatgttatatttttgtttcaggTTCAGCCTTCACTCAACCCACTTATTTC
GAGCTCTGCAATTACGACAAATGGCATccttatcaaaaaatatttctgtc
ACACATGGCAATTTTGAAACACTCCCAAATAAAGTAAAGGATTTTGTCgt
acaaaaaagtgaattatgtCAGCCAGATTTTCTCCACATTTGTGATGGCT
CAGAAGATGAGGCACAAAGCTTAGCTGATCTTCTTGTAAAAAATGGAACT
gcaagaaaattggaaaaaatggataATTGGTAAGAATGCACTTATGATTA
CTATTAACAAAGAATACCTCCACTCACTTTTAACTaaaaaccattttgat
ttttttaatcaaaattgtcatGATAAAGATTgaatattctttatttttag
cTATGCTGTCCGTACTAATCCAGCTGATGTTGCACGTGTTGAATCAAAAA
CGTTGATCTGTACTGAAAATAAACATGATACTGTCCCCCACACCAAAGAT
GGAGTTAGATGTTCAGTTGGACAATGGACTGAGCCTAAAGAAATGAAGGA
AAAGCTCCAAGGATTATTCCAAGGATGCATGAAGGGTAAAGATTTGAGAT
TTGAAATTATACTTAATACATTGCTCTGATTTGTGAGTGTTTTTTACATG
GTTTTCACATGGTTATGTTTCatctgattttttgtttttattcatgATCT
CTTTTGTATCTTATAGGAAGAACCATGTatgttattccattttcaatgGG
ACCTGTTGGCTCTCCTTTGTCCAAAATTGGTATTGAACTTACTGATTCTC
CATATGTCTCAATGTCTATGGGTGTTATGACTAGAATGGGATCAAAAGTA
TTGAATTCTCTGGGTGATGGTGATTTTGTCAAATGTTCTCACTCTGTTGG
ACAACCTTTACCTCTTGAAAAACCAGACCCATATAACTGGCCATGTAATC
CAGAAAAGACTGTTATCACACATTTCCCAGCTGACAGAGAAATCATCTCC
TTTGGATCTGGTTATGGTGGAAACTCACTTCttggaaagaaatgttttgc
TTTGAGAATCGCATCTGCTGTTGCTAGAGATGAAGGATGGTTAGCTGAAC
ACATGCTGGTATGTTCTCATTCCCCTTGAATTCGCAAAGTTAATTTATTC
ATGCTATCAAGTGCTATCTATGAAATCTGAAAAGTAACTAATTGGTTTTC
ATTGTCACCTCTTTTAGATCCTTGGATTGACTAACCCACAAGGTGAAAAG
AAATATGTTGCTGCTGCATTTCCAAGTGCTTGTGGAAAGACAAACTTAGC
TATGTTAACCCCAACTTTACCAGGATGGAAAGCAGAATGTGTCGGTGATG
ATATTGCATGGATGAAATTTGACGAGGAAGGTGTCTTGAGAGCTATTAAT
CCAGAATATGGATTCTTTGGTGTTGCCCCCGGAACCTCAATGGAAACCAA
CCCACAAGCATTAATTGCTTGTCAGAAGAACACTGTCTTTACTAACTGCG
CTACTACTGATGATGGTGAAATCTACTGGGAAGGTACAAcaagatcaaat
ttaatttctcaGACTTCTTCTTGCCCTTTTTTAATTGCTGGAAATGatca
tcaatttttaaaaatgactGAAGTTCTTAAGCTACACTCTATTAATTTCG
CTATCAATGCGCTAATCTGTATTCATGATTCATGAATATTAATTCGatta
atttgatgaattttttctcCAGGTCTTGAAAAGGAAGTCAACCTTGAAGG
TCGTTCAGTCACTGACTGGTTGGGTAAACCATGGACTAAAGAATCTGGAA
CAAAAGCTGCTCATCCAAACTCTCGATTCTGTACGCCAGCTGGAAATTGC
AAAGTTATCGATCCACTTTGGGAAGATCCTAAAGGTGTCCCAATCTCTGC
TATTTTGTTTGGTGGACGCCGACCAGAAGGTGTGCCATTGATCTACGAAG
CATTTAATTGGCAACATGGTGTGTTTGTTGCAAGTGCTCTTTGCTCTGAA
ACGACGGCTGCTGCAGAACACAAAGGCAAAGCTATAATGAGAGATCCCTT
CGCCATGAGACCATTCTTTGGATATAACGCTGGACATTACTTTAAACACT
GGCTGAGTCTTGAAGATGATAAGAAACATCAATTGCCTAAAATTTTCCAT
GTCAACTGGTTCAGGAAAGGAGAAGACGGCAAATTCCTATGGCCTGGTAA
GTCCTTGTTTACATTCTCATGGCTCTCTTTCATTTCATATAGACTTTACA
AATTAANACCAACCCACAAGCATTAATTGCTTGTCAGAAGAACACTGTCT
TTACTAACTGCGCTACTACTGATGATGGTGAAATCTACTGGGAAGGTACG
AcaagatcaaatttaatttctcaGACTTCTTCTTGCCCTTTTTTAATTGC
TGGAAATGatcatcaatttttaaaaatgactGAAGTTCTTAAGCTACTCT
ATTCATTTCGCTATCAATGCGCTAATCTGTATTCATGATTCATGAATATT
AATTCGattaatttgatgaattttttctcCAGGTCTTGAAAAGGAAGTCA
ACCTTGAAGGTCGTTCAGTCACTGACTGGTTGGGTAAACCATGGACTAAA
GAATCTGGAACAAAAGCTGCTCATCCAAACTCTCGATTCTGTACGCCAGC
TGGAAATTGCAAAGTTATCGATCCACTTTGGGAAGATCCTAAAGGTGTCC
CAATCTCTGCTATCTTGTTTGGTGGACGCCGACCAGAAGGTGTGCCATTG
ATCTACGAAGCATTTAATTGGCAACATGGTGTGTTTGTTGCAAGTGCTCT
TTGCTCTGAAACGACGGCTGCTGCAGAACACAAAGGCAAAGCTATAATGA
GAGATCCCTTCGCCATGAGACCATTCTTTGGATATAACGCTGGACATTAC
TTTAAACACTGGTTGAGTCTTGAAGATGATAAGAAACATCAATTGCCTAA
AATTTTCCATGTCAACTGGTTCAGAAAAGGAGAAGACGGCAAATTCCTAT
GGCCTGGTAAGTCCTTGTTTACATTCTCATGGCTCTCTTTCATTTCATAT
AgacttttcaaattatttgtGAACCTTTCCTCttcattttataaaatttc
cTTGAATACCAGTTTGAAAGACTAAAATCTCTCATATTAAAAATGGCATG
CAATCTCAAAGGAGGGATTATAATAGTTTTCTTAGCTGTAGTTTCCAAAC
AACCTATAACAATTAcaataattttcatatttcagGATTCGGTGAAAACT
GTCGTGTCTTGAAATGGGTTTTCGATCGCGTCGACGGCAAACACGGAGTC
CAAAAATCCACCGTCGGATATTTACCTGAAAATGACGCATTAGACTTAAA
TGGACTAGATGAAGATTTAAATATGAAAGAACTAATGTCTGTTCCCACTG
ACTATTGGATGGAACAACTAGATGATATtgagaaatattataatcaacAA
TTTGGTGAAGATATTCCACAACAATTATGGGATGAAGTACATTCTTTCAG
GGAACGATTGACAAAATCTCCTACCGCCGCTTAAATGTGTTATTTATTGG
AAGATGATGATTGTTGTTGATGCTTTTTGTCCTTTTTAACcttatattta
gaatttttcctACACCatttctgaaaaatgaaaaacaatttttatgatGT
TGTAGTCACAATCGGACTTGTcattttcttcttattttcCTCATTTTACT
GAGTTGGAATTGTCAATAAGTGTaaaatgattttacttttttatttagtg
atcGTAAAACAAAATTACACTAAGAAAGCTAAGCTATGCACGTTGCTAAT
ATACAATANtttacttttttatttagtgatcGTAAAACAAAATTACACTA
AGAAAGCTAAGCTATACACGTTGCTAATATACAATAGTATAGTAAAGAgg
acttttttagttttagggacttgatttctttttaaagtgtttgttcgttt
tctttttgttaACAGAATTTTTTAATTGTTCAGCTGTatttaaaaatgct
attttatgtctttgttttattttgttatatctttatttttcagctttctt
ttggtACAATATACAGTCTTTTTTTTCGTTTATCTGTCACGGTATTATTT
TTGTTTGGCTAGAGAGATATTTATaagaaatattaaaatttaaatattat
TATCATGTGATAGtttaacatttttgtaaacttcAAGTTTATAAGGGAGA
ATAATTTTTTGTTACTTTGTATCATCTTATTTTAATGCTAGagtttatat
ttgttttgtaATATTGACGTTTTTGAAGTCAGTAAAATACAacgttttcg
aaaaaaaatcaacattgcTGCACGGTTTTATACCCCCTAATGAATCGTTC
AATTTTTTATTAATATTTGCAGAATCaagatttcaatgtttttttccttt
tactCTTTTCATCAGACGAATTgataagaaattaaatttttgcgtttaag
agagaaaaaaaacaaatagccAGAAAAAACATAGTCAGCGAAGATTTTTA
CCTGATTTCAATATCTCGCCGCTGGCTCACCATAGGATAACGATGGATGG
CCTCACAATATTATTTcaaactaaagtctgttccaaaaatgACAGTCAGC
ACATTTTGATACATTGTCCTTGAAGGTGTAGAGATAAATTAATATACTGC
TAGAAATATCGTTTTGAGTGGATTTCCacctttttaaaactttggaaCTT
ccctgatttcaaatatgtattcgga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045230XLOC_045230Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072891-exon-scaffold_86-1491911889:542317..542467TCONS_00072891-exon-scaffold_86-1491911889:542317..542467Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1510915933:542317..542467TCONS_00072891-exon-scaffold_86-1510915933:542317..542467Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1575043694:542317..542467TCONS_00072891-exon-scaffold_86-1575043694:542317..542467Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1491911889:547538..547795TCONS_00072891-exon-scaffold_86-1491911889:547538..547795Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1510915933:547538..547795TCONS_00072891-exon-scaffold_86-1510915933:547538..547795Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1575043694:547538..547795TCONS_00072891-exon-scaffold_86-1575043694:547538..547795Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1491911889:547917..548101TCONS_00072891-exon-scaffold_86-1491911889:547917..548101Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1510915933:547917..548101TCONS_00072891-exon-scaffold_86-1510915933:547917..548101Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1575043694:547917..548101TCONS_00072891-exon-scaffold_86-1575043694:547917..548101Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1491911889:548233..548624TCONS_00072891-exon-scaffold_86-1491911889:548233..548624Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1510915933:548233..548624TCONS_00072891-exon-scaffold_86-1510915933:548233..548624Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1575043694:548233..548624TCONS_00072891-exon-scaffold_86-1575043694:548233..548624Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1491911889:548734..549049TCONS_00072891-exon-scaffold_86-1491911889:548734..549049Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1510915933:548734..549049TCONS_00072891-exon-scaffold_86-1510915933:548734..549049Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1575043694:548734..549049TCONS_00072891-exon-scaffold_86-1575043694:548734..549049Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1491911889:549239..549643TCONS_00072891-exon-scaffold_86-1491911889:549239..549643Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1510915933:549239..549643TCONS_00072891-exon-scaffold_86-1510915933:549239..549643Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1575043694:549239..549643TCONS_00072891-exon-scaffold_86-1575043694:549239..549643Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1491911889:550454..550522TCONS_00072891-exon-scaffold_86-1491911889:550454..550522Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1510915933:550454..550522TCONS_00072891-exon-scaffold_86-1510915933:550454..550522Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1575043694:550454..550522TCONS_00072891-exon-scaffold_86-1575043694:550454..550522Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1491911889:550752..552241TCONS_00072891-exon-scaffold_86-1491911889:550752..552241Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1510915933:550752..552241TCONS_00072891-exon-scaffold_86-1510915933:550752..552241Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1575043694:550752..552241TCONS_00072891-exon-scaffold_86-1575043694:550752..552241Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:542317..552241 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	3.19971e-10	0	0	0	0	1.6443e-10	0.135285	0	0	0	0	0	0	6.76361	21.316	14.8568	24.6726	0	0	0.000669724	0.31382	0	0
Blast
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BLAST of TCONS_00072891 vs. Swiss-Prot (Human)
Match: PCKGC (Phosphoenolpyruvate carboxykinase, cytosolic [GTP] OS=Homo sapiens GN=PCK1 PE=1 SV=3)

HSP 1 Score: 816.224 bits (2107), Expect = 0.000e+0
Identity = 377/616 (61.20%), Postives = 474/616 (76.95%), Query Frame = 3 
Query:  210 LSKNISVTHGNFETLPNKVKDFVVQKSELCQPDFLHICDGSEDEAQSLADLLVKNGTARKLEKMDNCYAVRTNPADVARVESKTLICTENKHDTVPHTKDGVRCSVGQWTEPKEMKEKLQGLFQGCMKGRTMYVIPFSMGPVGSPLSKIGIELTDSPYVSMSMGVMTRMGSKVLNSLGDGDFVKCSHSVGQPLPLEKPDPYNWPCNPEKTVITHFPADREIISFGSGYGGNSLLGKKCFALRIASAVARDEGWLAEHMLILGLTNPQGEKKYVAAAFPSACGKTNLAMLTPTLPGWKAECVGDDIAWMKFDEEGVLRAINPEYGFFGVAPGTSMETNPQALIACQKNTVFTNCATTDDGEIYWEGLEKEVNLEGRSVTDWLGKPWTKESGTKAAHPNSRFCTPAGNCKVIDPLWEDPKGVPISAILFGGRRPEGVPLIYEAFNWQHGVFVASALCSETTAAAEHKGKAIMRDPFAMRPFFGYNAGHYFKHWLSLEDDKKHQLPKIFHVNWFRKGEDGKFLWPGFGENCRVLKWVFDRVDGKHGVQKSTVGYLPENDALDLNGLDEDLNMKELMSVPTDYWMEQLDDIEKYYNQQFGEDIPQQLWDEVHSFRERLTK 2057
            L+ +  V  G+ ++LP  V++F+   +ELCQPD +HICDGSE+E   L   + + G  R+L+K DNC+   T+P DVAR+ESKT+I T+ + DTVP  K G+   +G+W   ++ ++     F GCMKGRTMYVIPFSMGP+GSPLSKIGIELTDSPYV  SM +MTRMG+ VL ++GDG+FVKC HSVG PLPL+KP   NWPCNPE T+I H P  REIISFGSGYGGNSLLGKKCFALR+AS +A++EGWLAEHMLILG+TNP+GEKKY+AAAFPSACGKTNLAM+ P+LPGWK ECVGDDIAWMKFD +G LRAINPE GFFGVAPGTS++TNP A+   QKNT+FTN A T DG +YWEG+++ +   G ++T W  K W+ E G   AHPNSRFCTPA  C +ID  WE P+GVPI  I+FGGRRP GVPL+YEA +WQHGVFV +A+ SE TAAAEHKGK IM DPFAMRPFFGYN G Y  HWLS+      +LPKIFHVNWFRK ++GKFLWPGFGEN RVL+W+F+R+DGK   + + +GY+P+ DAL+L GL   +NM EL S+  ++W ++++DIEKY   Q   D+P ++  E+ + ++R+++
Sbjct:    9 LNLSAKVVQGSLDSLPQAVREFLENNAELCQPDHIHICDGSEEENGRLLGQMEEEGILRRLKKYDNCWLALTDPRDVARIESKTVIVTQEQRDTVPIPKTGL-SQLGRWMSEEDFEKAFNARFPGCMKGRTMYVIPFSMGPLGSPLSKIGIELTDSPYVVASMRIMTRMGTPVLEAVGDGEFVKCLHSVGCPLPLQKPLVNNWPCNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALRMASRLAKEEGWLAEHMLILGITNPEGEKKYLAAAFPSACGKTNLAMMNPSLPGWKVECVGDDIAWMKFDAQGHLRAINPENGFFGVAPGTSVKTNPNAIKTIQKNTIFTNVAETSDGGVYWEGIDEPL-ASGVTITSWKNKEWSSEDGEPCAHPNSRFCTPASQCPIIDAAWESPEGVPIEGIIFGGRRPAGVPLVYEALSWQHGVFVGAAMRSEATAAAEHKGKIIMHDPFAMRPFFGYNFGKYLAHWLSMAQHPAAKLPKIFHVNWFRKDKEGKFLWPGFGENSRVLEWMFNRIDGKASTKLTPIGYIPKEDALNLKGLGH-INMMELFSISKEFWEKEVEDIEKYLEDQVNADLPCEIEREILALKQRISQ 621
The following BLAST results are available for this feature:
BLAST of TCONS_00072891 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PCKGC0.000e+061.20Phosphoenolpyruvate carboxykinase, cytosolic [GTP]... [more]
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