TCONS_00072891 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072891
Unique NameTCONS_00072891
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3266

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072891 ID=TCONS_00072891|Name=TCONS_00072891|organism=Clytia hemisphaerica|type=transcript|length=3266bp
cTGAAAGATAaaggttttgagaaaaattatagcattccATCGTGACGTCA
TGACTTTTATAAAAGGCAAGCTAGAAACAGAGCTGAGATACAGTTAAATA
ACAGTCAACCGTTTTTAGCAACCTTGCACAAGAACCTAAACAACTTTAAA
GgTTCAGCCTTCACTCAACCCACTTATTTCGAGCTCTGCAATTACGACAA
ATGGCATccttatcaaaaaatatttctgtcACACATGGCAATTTTGAAAC
ACTCCCAAATAAAGTAAAGGATTTTGTCgtacaaaaaagtgaattatgtC
AGCCAGATTTTCTCCACATTTGTGATGGCTCAGAAGATGAGGCACAAAGC
TTAGCTGATCTTCTTGTAAAAAATGGAACTgcaagaaaattggaaaaaat
ggataATTGcTATGCTGTCCGTACTAATCCAGCTGATGTTGCACGTGTTG
AATCAAAAACGTTGATCTGTACTGAAAATAAACATGATACTGTCCCCCAC
ACCAAAGATGGAGTTAGATGTTCAGTTGGACAATGGACTGAGCCTAAAGA
AATGAAGGAAAAGCTCCAAGGATTATTCCAAGGATGCATGAAGGGAAGAA
CCATGTatgttattccattttcaatgGGACCTGTTGGCTCTCCTTTGTCC
AAAATTGGTATTGAACTTACTGATTCTCCATATGTCTCAATGTCTATGGG
TGTTATGACTAGAATGGGATCAAAAGTATTGAATTCTCTGGGTGATGGTG
ATTTTGTCAAATGTTCTCACTCTGTTGGACAACCTTTACCTCTTGAAAAA
CCAGACCCATATAACTGGCCATGTAATCCAGAAAAGACTGTTATCACACA
TTTCCCAGCTGACAGAGAAATCATCTCCTTTGGATCTGGTTATGGTGGAA
ACTCACTTCttggaaagaaatgttttgcTTTGAGAATCGCATCTGCTGTT
GCTAGAGATGAAGGATGGTTAGCTGAACACATGCTGATCCTTGGATTGAC
TAACCCACAAGGTGAAAAGAAATATGTTGCTGCTGCATTTCCAAGTGCTT
GTGGAAAGACAAACTTAGCTATGTTAACCCCAACTTTACCAGGATGGAAA
GCAGAATGTGTCGGTGATGATATTGCATGGATGAAATTTGACGAGGAAGG
TGTCTTGAGAGCTATTAATCCAGAATATGGATTCTTTGGTGTTGCCCCCG
GAACCTCAATGGAAACCAACCCACAAGCATTAATTGCTTGTCAGAAGAAC
ACTGTCTTTACTAACTGCGCTACTACTGATGATGGTGAAATCTACTGGGA
AGGTCTTGAAAAGGAAGTCAACCTTGAAGGTCGTTCAGTCACTGACTGGT
TGGGTAAACCATGGACTAAAGAATCTGGAACAAAAGCTGCTCATCCAAAC
TCTCGATTCTGTACGCCAGCTGGAAATTGCAAAGTTATCGATCCACTTTG
GGAAGATCCTAAAGGTGTCCCAATCTCTGCTATTTTGTTTGGTGGACGCC
GACCAGAAGGTGTGCCATTGATCTACGAAGCATTTAATTGGCAACATGGT
GTGTTTGTTGCAAGTGCTCTTTGCTCTGAAACGACGGCTGCTGCAGAACA
CAAAGGCAAAGCTATAATGAGAGATCCCTTCGCCATGAGACCATTCTTTG
GATATAACGCTGGACATTACTTTAAACACTGGCTGAGTCTTGAAGATGAT
AAGAAACATCAATTGCCTAAAATTTTCCATGTCAACTGGTTCAGAAAAGG
AGAAGACGGCAAATTCCTATGGCCTGGATTCGGTGAAAACTGTCGTGTCT
TGAAATGGGTTTTCGATCGCGTCGACGGCAAACACGGAGTCCAAAAATCC
ACCGTCGGATATTTACCTGAAAATGACGCATTAGACTTAAATGGACTAGA
TGAAGATTTAAATATGAAAGAACTAATGTCTGTTCCCACTGACTATTGGA
TGGAACAACTAGATGATATtgagaaatattataatcaacAATTTGGTGAA
GATATTCCACAACAATTATGGGATGAAGTACATTCTTTCAGGGAACGATT
GACAAAATCTCCTACCGCCGCTTAAATGTGTTATTTATTGGAAGATGATG
ATTGTTGTTGATGCTTTTTGTCCTTTTTAACcttatatttagaatttttc
ctACACCatttctgaaaaatgaaaaacaatttttatgatGTTGTAGTCAC
AATCGGACTTGTcattttcttcttattttcCTCATTTTACTGAGTTGGAA
TTGTCAATAAGTGTaaaatgattttacttttttatttagtgatcGTAAAA
CAAAATTACACTAAGAAAGCTAAGCTATGCACGTTGCTAATATACAATAN
tttacttttttatttagtgatcGTAAAACAAAATTACACTAAGAAAGCTA
AGCTATACACGTTGCTAATATACAATAGTATAGTAAAGAggactttttta
gttttagggacttgatttctttttaaagtgtttgttcgttttctttttgt
taACAGAATTTTTTAATTGTTCAGCTGTatttaaaaatgctattttatgt
ctttgttttattttgttatatctttatttttcagctttcttttggtACAA
TATACAGTCTTTTTTTTCGTTTATCTGTCACGGTATTATTTTTGTTTGGC
TAGAGAGATATTTATaagaaatattaaaatttaaatattatTATCATGTG
ATAGtttaacatttttgtaaacttcAAGTTTATAAGGGAGAATAATTTTT
TGTTACTTTGTATCATCTTATTTTAATGCTAGagtttatatttgttttgt
aATATTGACGTTTTTGAAGTCAGTAAAATACAacgttttcgaaaaaaaat
caacattgcTGCACGGTTTTATACCCCCTAATGAATCGTTCAATTTTTTA
TTAATATTTGCAGAATCaagatttcaatgtttttttccttttactCTTTT
CATCAGACGAATTgataagaaattaaatttttgcgtttaagagagaaaaa
aaacaaatagccAGAAAAAACATAGTCAGCGAAGATTTTTACCTGATTTC
AATATCTCGCCGCTGGCTCACCATAGGATAACGATGGATGGCCTCACAAT
ATTATTTcaaactaaagtctgttccaaaaatgACAGTCAGCACATTTTGA
TACATTGTCCTTGAAGGTGTAGAGATAAATTAATATACTGCTAGAAATAT
CGTTTTGAGTGGATTTCCacctttttaaaactttggaaCTTccctgattt
caaatatgtattcgga
Run BLAST on NCBI

transcript from alignment at scaffold_86:542317..552241+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072891 ID=TCONS_00072891|Name=TCONS_00072891|organism=Clytia hemisphaerica|type=transcript|length=9925bp|location=Sequence derived from alignment at scaffold_86:542317..552241+ (Clytia hemisphaerica)
cTGAAAGATAaaggttttgagaaaaattatagcattccATCGTGACGTCA TGACTTTTATAAAAGGCAAGCTAGAAACAGAGCTGAGATACAGTTAAATA ACAGTCAACCGTTTTTAGCAACCTTGCACAAGAACCTAAACAACTTTAAA GGTAAGATTTGATGTAATTATTTTGCTAGATGGTACGTATAAGTAATAGT GAGATATCAAAGTTTAAGTAGATAAAGAAAGAAAGTTGTGTAATTTTCGT AAGTTATCTAGAGCTAAAAACAAGTCTTCTtgggaaaaattaaatactaT TGGATAAAAAATACAACGcaaaaatttttccattttatcATGCTTCAGTG GGCAAAACCTAAAAtaataagaaatacttcttcttTTTATGGAACCCCAA AAATTCCAGGAAAATTGCACGAATTCCAAAATCAGTATTCAAAGCAAAGG TTTCATTGTCACATAGAAGCCCAGTTTCGATGAACTTTGCAGAATTCTAC CAGCATCTAGCACAGTAATCCATCTTAAACTGAAAATCTTGTGTGTACTG CGCTTTAGCTTGTTCCAGCTTACCTTTTGAAAAGTTCTTTGAAAAAGATA ACtagatatttcaaattttcaaatatgcTTAGGGAAGAGGAAAATTTGAG GAAATTCAAAGGTACACAATTTTTCCTggaaaagttaaaaaacataCAGA AAATTCTTCTAGAAAAATAGCAGGATAGCCGTATTTATCATTATCATTCC CTGATTCAACTTAATCCCTTCAGAAAACTGTCAACAAAAATATTGTATGC ATGGGTTCTCTGAAAAGATTTCTTTATAACTTCAGCCATAAAAAATCTAC AGGTTGGCATGATCCCATGAAATTTATTCTTGTCtctctatttttctttg ccTTGCTTTTGCTTTGCCTTTGCCTGCTTATTATTAATTGCATTTTTTAA TAATTCTAGATCAATTAgataatttaaaaaagtataACTTTCTGCCTCCT GACAAATTGCAGGGTACAAATTCCTGTAAATTCCAATTTTCACACATTGA GCAAGACTCAGACACACTGGGTCCAGAAAGCTAAGCTTTATAAATAGGAA AATGAGGGACACAAAAAGGTActtttgattatattttgattCTGAAGTCT TTCCTATAACTGGATCATGTTAAAACTATGATAAACCATTGAtgcttttc agaatttttcatgtaaattgaaaattttactttgaaaaattcaggcaaac tttcaactaaaacCAAAAGTGTCATTTAGAAATTGAATCATATTCAGAAT GGGCAAATTGGGCATGAAAAATCCAGgcaaactttcaactaaaacCAAAA GTGTCATTTAGAAATTGAATCATATTCAGAATGGGCTTTTGTAGTGGCTT GAAGTGGCTttagttttcaaaatatatattgTTGAGTATGTGACTTTACT ATATGATTAATGAGATTGGATATTTTTGCTGGAGGTTAacttgttttttt aaatcaaaaaatttccatggaaaatcttatttttagtttgcttttactta cttttgatacttttgatggGTTTTTAGAGTCTCTCAATCATTCCATTTGG ATTTTAGATGCCCAAAAAtacatttcattattttccctTTAGATTTAGGA CATAATGTCACTGGAGATATTATGCAAAAAGAACTGATTCAAAAGCTTAT TTACCATGAAATCAAAATCTTGTCCAAATCAAGAATATATTTTACAGACA ATCGCTAGACATTTGTGACACTTTGTAAACTTGTTTGAATGTGCACTTTT AAACTCGGTGTGCAGACGCTTAGTTATAAGTTATATGAAACACATTAAGA TATTGATCTACTAGGCTATCTACTATGGAATTTGGAgtaccaaattttca aaaagattttgataaTTCAATCACTTTTTTAACAACCCTTCGAAGACTCA ATAACCGTAcatactttgattgttattaaTTAATTTCGATAAACTCAACA CAACCAATTGATTACTTCTATAACTATTGATtacttaaagtctgtctcaa tataatttgacaaaaaaggctataacttttgatagaattcaaatTAGATA gcagttttgtgcttgttgagaagacaaacaggagtggaacattatcataa agaaaaaattcaaaaaagattgaaaaacaaagatggaaatgaagaagaag aaaatcaacttcttcaataattgtgcttataattatcattttcacacgag tgattcTTTGACCTTAGAGCATCATTAATGTGAAaaacaatcttcaaaaa aatttattttatccaaagatatagtccaaagtttgtcactgattgacttc aaaaaccatcaaaaacaaacaaaaaagagcccttttttaagtcaaccagc gacaaagttttaagctgtattttttgactgaagcaatattttgtgatttt atttCGTATATCTATGATGTtctaaagattaaagaatttttaatatgaaa atgaaaatcatagcattattcaacaagaagttgattttctactatcttat ttttcatctttgtttttcaatttttttaatttttttcttttttgacagtt tACAGTAGTGGAAGTACCTCGATTTTAAGCATGTTCAaaaagttcacaat aacgactttctttttataacggAAACCAAACGAGTAAGAAAAAGTCAAGC AACTAAATCTCAGCGCTCCGTGGTTGTGACGtagtttacaaaattgttaa gatataatgacatactttttaacaacttttttctatgtcatttttgaagc ctcttcGTAGGAGAATTTTATtacacttcatggcagattaaaaagacgat tagaaaacgaaagcttcttcatttttcatttttgcatttaaggggaagaa tgaaattttcagaagattatttatttgatatgaggattcccatttccgta aaATTGCAATTCCTCATGGTTGTGAAATGgtggctatgggtaattccttt gttcttttgccaTTTTCATTTGTTCTATGTGACGTAAAGATGCTTCACAA ATCAAAGTATTTCCACTAACTGTTTGATAATATTCAACTCtgaaatatct ttttaatgagCACAAAACCAATATCTATCAGAAGTTATAGCCTTGGTTGT CTCTATTGCAAATTATGTTGAGACAAACTTTagataaccaattgattacA TATATAGTATAGATgtctttaagaaaaaccaaaaacattgacctTAAAAC CAAAGCACAATAAGAAGCAGCAGCAGCCATAAGAATAACCTTCAGTAATT ACCCCACCATTTTGTGTGGGTTTCCCGAAGTAACTCATATCGTGCATTCT GATTGATCGGAGAAAAACAAAGTGGTTTTCGCGCGTGATTTTTATTAAAG AAGAATATGTTGAAATTAGAAagagatgtcgacattagaccaacttacag taattaattagttattcaaaagacgaAAGACCGTCATGTTCCTTTATTTA TATGCTAATGACAAATGAACAGCATGGCAGTGCTTGGAACCAAAACTGTT GATAAGAATCTGCCAAAccaaacaatcaaaacaaaacacccCCACCACCC ACAGTCcactttgaaaacaaaatttaaaaattgaatagaaaaccTTTTTC ATCTTTGTGCCAGTAAGtccagtgaaaaaaaattttgtttctaaaaatgA ACTCACAGCTCTCTAAAAATATTATctgttaaaagtaaaaaaaggaCGGT GTGTAGTTATAGTTGGTAGAGTTATTTCCTCTCTTCTCTAACTAATAATT CTCACTGAACTAAATTTCCTTACATTTAGTGGTGTTGTTTGCTGTTCATT CATTACACATCCCTTACACTATATAAAGAggtttttaaaatctgaaacat taaaaattttgttaagattttgactttttttgatgtTGATGTCGCTATCA AAGATGGCGGGTTTCCCGCCagaaattgtaaacaaaaactaGCCTGTGAA ACCTATTCCGGTCCTTGAAATATCACAGGAATAGAATTTTGGTTCggtaa aataaatcaaaagaatttgataatGAGATTTCCTGATTTCATGAATGTGC AAAGTTGCCCAGGGAATTTGATAAGCACGTTGCACTCAGTGGCTGGAGAA GGCGACACAAAAATCactttaaactaaaattgctcGAGGTTTTAAAGTAC AACAAAAATGGCACCATATGCTAAGCTACTCACAAGGTATACAATTTTTG TTTACACCAAATTTCTcggaatttttttgcaaaatgaagtcattgcaaag caatttaaaaaaataaattttactcGACTGTTCGATTCGATGAATTTGAG GCTTTTGTAGTTTTTATTCCTTGACTCTCATGGACATAGATCAGCATGAT TTGTTTATAGAACAAGGTATATTGTTTTGTTTGCAGTATAGTtgttaaaa aagttttgtttgttttggctTATGACATTGTTTTTATTACAAACTTTCGa ccttttgttcttatttattttGTGTTGATGGGACTTTTTATAGCAgtatt tgactgaaatttgaaaCCTTTTATAAAGCACTCAATGCCTTTTTACTTCC GCGTCTATAACAAGTTTTTAGATAGATTTATCTATTTTTGTGAGTTTTGG ACGCATTCAACCGAAAATATAgaaacatttttagatttcttacTCCTAAA CTAAATTATTCATGATCAATACAAGAGTTTCCAATCCCTATACAAATGAC CTCTTTTCAATCTCTAAGCTATGATTCCTATAATATTTCTTGACTTCATT CATCCCGTTTAAGGATTTGAATATGTCTTTTAAatacaaaatttagaaat gtaAAAATGGCTTTACAATTAATGATAGGAACTTATCAGTTAGATTTAAA TAGTTTTTAAAGATTAATGTCTTgcattaagaagattaaaagaCATTTAA GAGTTTCTATTGCTCAAAACAGTTAGACTCACACCTTAATTTAAACCCTA TTGTCAAGACACAAAAATTGAAATGCTAGAATTCTAAGTACCTTATAACC AACCTATatgtaaaatagaaaatgaaccACTGAACTGACTTggatatttt ttaattcaagggTTTATTTTATAGATAAACTTGGCACTACATTAGACATT CCCATACTTTCCCATTAATTCAAAAGACTCCTCAAAATCAAAAGCgtgaa aatgttatatttttgtttcaggTTCAGCCTTCACTCAACCCACTTATTTC GAGCTCTGCAATTACGACAAATGGCATccttatcaaaaaatatttctgtc ACACATGGCAATTTTGAAACACTCCCAAATAAAGTAAAGGATTTTGTCgt acaaaaaagtgaattatgtCAGCCAGATTTTCTCCACATTTGTGATGGCT CAGAAGATGAGGCACAAAGCTTAGCTGATCTTCTTGTAAAAAATGGAACT gcaagaaaattggaaaaaatggataATTGGTAAGAATGCACTTATGATTA CTATTAACAAAGAATACCTCCACTCACTTTTAACTaaaaaccattttgat ttttttaatcaaaattgtcatGATAAAGATTgaatattctttatttttag cTATGCTGTCCGTACTAATCCAGCTGATGTTGCACGTGTTGAATCAAAAA CGTTGATCTGTACTGAAAATAAACATGATACTGTCCCCCACACCAAAGAT GGAGTTAGATGTTCAGTTGGACAATGGACTGAGCCTAAAGAAATGAAGGA AAAGCTCCAAGGATTATTCCAAGGATGCATGAAGGGTAAAGATTTGAGAT TTGAAATTATACTTAATACATTGCTCTGATTTGTGAGTGTTTTTTACATG GTTTTCACATGGTTATGTTTCatctgattttttgtttttattcatgATCT CTTTTGTATCTTATAGGAAGAACCATGTatgttattccattttcaatgGG ACCTGTTGGCTCTCCTTTGTCCAAAATTGGTATTGAACTTACTGATTCTC CATATGTCTCAATGTCTATGGGTGTTATGACTAGAATGGGATCAAAAGTA TTGAATTCTCTGGGTGATGGTGATTTTGTCAAATGTTCTCACTCTGTTGG ACAACCTTTACCTCTTGAAAAACCAGACCCATATAACTGGCCATGTAATC CAGAAAAGACTGTTATCACACATTTCCCAGCTGACAGAGAAATCATCTCC TTTGGATCTGGTTATGGTGGAAACTCACTTCttggaaagaaatgttttgc TTTGAGAATCGCATCTGCTGTTGCTAGAGATGAAGGATGGTTAGCTGAAC ACATGCTGGTATGTTCTCATTCCCCTTGAATTCGCAAAGTTAATTTATTC ATGCTATCAAGTGCTATCTATGAAATCTGAAAAGTAACTAATTGGTTTTC ATTGTCACCTCTTTTAGATCCTTGGATTGACTAACCCACAAGGTGAAAAG AAATATGTTGCTGCTGCATTTCCAAGTGCTTGTGGAAAGACAAACTTAGC TATGTTAACCCCAACTTTACCAGGATGGAAAGCAGAATGTGTCGGTGATG ATATTGCATGGATGAAATTTGACGAGGAAGGTGTCTTGAGAGCTATTAAT CCAGAATATGGATTCTTTGGTGTTGCCCCCGGAACCTCAATGGAAACCAA CCCACAAGCATTAATTGCTTGTCAGAAGAACACTGTCTTTACTAACTGCG CTACTACTGATGATGGTGAAATCTACTGGGAAGGTACAAcaagatcaaat ttaatttctcaGACTTCTTCTTGCCCTTTTTTAATTGCTGGAAATGatca tcaatttttaaaaatgactGAAGTTCTTAAGCTACACTCTATTAATTTCG CTATCAATGCGCTAATCTGTATTCATGATTCATGAATATTAATTCGatta atttgatgaattttttctcCAGGTCTTGAAAAGGAAGTCAACCTTGAAGG TCGTTCAGTCACTGACTGGTTGGGTAAACCATGGACTAAAGAATCTGGAA CAAAAGCTGCTCATCCAAACTCTCGATTCTGTACGCCAGCTGGAAATTGC AAAGTTATCGATCCACTTTGGGAAGATCCTAAAGGTGTCCCAATCTCTGC TATTTTGTTTGGTGGACGCCGACCAGAAGGTGTGCCATTGATCTACGAAG CATTTAATTGGCAACATGGTGTGTTTGTTGCAAGTGCTCTTTGCTCTGAA ACGACGGCTGCTGCAGAACACAAAGGCAAAGCTATAATGAGAGATCCCTT CGCCATGAGACCATTCTTTGGATATAACGCTGGACATTACTTTAAACACT GGCTGAGTCTTGAAGATGATAAGAAACATCAATTGCCTAAAATTTTCCAT GTCAACTGGTTCAGGAAAGGAGAAGACGGCAAATTCCTATGGCCTGGTAA GTCCTTGTTTACATTCTCATGGCTCTCTTTCATTTCATATAGACTTTACA AATTAANACCAACCCACAAGCATTAATTGCTTGTCAGAAGAACACTGTCT TTACTAACTGCGCTACTACTGATGATGGTGAAATCTACTGGGAAGGTACG AcaagatcaaatttaatttctcaGACTTCTTCTTGCCCTTTTTTAATTGC TGGAAATGatcatcaatttttaaaaatgactGAAGTTCTTAAGCTACTCT ATTCATTTCGCTATCAATGCGCTAATCTGTATTCATGATTCATGAATATT AATTCGattaatttgatgaattttttctcCAGGTCTTGAAAAGGAAGTCA ACCTTGAAGGTCGTTCAGTCACTGACTGGTTGGGTAAACCATGGACTAAA GAATCTGGAACAAAAGCTGCTCATCCAAACTCTCGATTCTGTACGCCAGC TGGAAATTGCAAAGTTATCGATCCACTTTGGGAAGATCCTAAAGGTGTCC CAATCTCTGCTATCTTGTTTGGTGGACGCCGACCAGAAGGTGTGCCATTG ATCTACGAAGCATTTAATTGGCAACATGGTGTGTTTGTTGCAAGTGCTCT TTGCTCTGAAACGACGGCTGCTGCAGAACACAAAGGCAAAGCTATAATGA GAGATCCCTTCGCCATGAGACCATTCTTTGGATATAACGCTGGACATTAC TTTAAACACTGGTTGAGTCTTGAAGATGATAAGAAACATCAATTGCCTAA AATTTTCCATGTCAACTGGTTCAGAAAAGGAGAAGACGGCAAATTCCTAT GGCCTGGTAAGTCCTTGTTTACATTCTCATGGCTCTCTTTCATTTCATAT AgacttttcaaattatttgtGAACCTTTCCTCttcattttataaaatttc cTTGAATACCAGTTTGAAAGACTAAAATCTCTCATATTAAAAATGGCATG CAATCTCAAAGGAGGGATTATAATAGTTTTCTTAGCTGTAGTTTCCAAAC AACCTATAACAATTAcaataattttcatatttcagGATTCGGTGAAAACT GTCGTGTCTTGAAATGGGTTTTCGATCGCGTCGACGGCAAACACGGAGTC CAAAAATCCACCGTCGGATATTTACCTGAAAATGACGCATTAGACTTAAA TGGACTAGATGAAGATTTAAATATGAAAGAACTAATGTCTGTTCCCACTG ACTATTGGATGGAACAACTAGATGATATtgagaaatattataatcaacAA TTTGGTGAAGATATTCCACAACAATTATGGGATGAAGTACATTCTTTCAG GGAACGATTGACAAAATCTCCTACCGCCGCTTAAATGTGTTATTTATTGG AAGATGATGATTGTTGTTGATGCTTTTTGTCCTTTTTAACcttatattta gaatttttcctACACCatttctgaaaaatgaaaaacaatttttatgatGT TGTAGTCACAATCGGACTTGTcattttcttcttattttcCTCATTTTACT GAGTTGGAATTGTCAATAAGTGTaaaatgattttacttttttatttagtg atcGTAAAACAAAATTACACTAAGAAAGCTAAGCTATGCACGTTGCTAAT ATACAATANtttacttttttatttagtgatcGTAAAACAAAATTACACTA AGAAAGCTAAGCTATACACGTTGCTAATATACAATAGTATAGTAAAGAgg acttttttagttttagggacttgatttctttttaaagtgtttgttcgttt tctttttgttaACAGAATTTTTTAATTGTTCAGCTGTatttaaaaatgct attttatgtctttgttttattttgttatatctttatttttcagctttctt ttggtACAATATACAGTCTTTTTTTTCGTTTATCTGTCACGGTATTATTT TTGTTTGGCTAGAGAGATATTTATaagaaatattaaaatttaaatattat TATCATGTGATAGtttaacatttttgtaaacttcAAGTTTATAAGGGAGA ATAATTTTTTGTTACTTTGTATCATCTTATTTTAATGCTAGagtttatat ttgttttgtaATATTGACGTTTTTGAAGTCAGTAAAATACAacgttttcg aaaaaaaatcaacattgcTGCACGGTTTTATACCCCCTAATGAATCGTTC AATTTTTTATTAATATTTGCAGAATCaagatttcaatgtttttttccttt tactCTTTTCATCAGACGAATTgataagaaattaaatttttgcgtttaag agagaaaaaaaacaaatagccAGAAAAAACATAGTCAGCGAAGATTTTTA CCTGATTTCAATATCTCGCCGCTGGCTCACCATAGGATAACGATGGATGG CCTCACAATATTATTTcaaactaaagtctgttccaaaaatgACAGTCAGC ACATTTTGATACATTGTCCTTGAAGGTGTAGAGATAAATTAATATACTGC TAGAAATATCGTTTTGAGTGGATTTCCacctttttaaaactttggaaCTT ccctgatttcaaatatgtattcgga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045230XLOC_045230Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072891-exon-scaffold_86-1491911889:542317..542467TCONS_00072891-exon-scaffold_86-1491911889:542317..542467Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1510915933:542317..542467TCONS_00072891-exon-scaffold_86-1510915933:542317..542467Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1575043694:542317..542467TCONS_00072891-exon-scaffold_86-1575043694:542317..542467Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1491911889:547538..547795TCONS_00072891-exon-scaffold_86-1491911889:547538..547795Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1510915933:547538..547795TCONS_00072891-exon-scaffold_86-1510915933:547538..547795Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1575043694:547538..547795TCONS_00072891-exon-scaffold_86-1575043694:547538..547795Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1491911889:547917..548101TCONS_00072891-exon-scaffold_86-1491911889:547917..548101Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1510915933:547917..548101TCONS_00072891-exon-scaffold_86-1510915933:547917..548101Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1575043694:547917..548101TCONS_00072891-exon-scaffold_86-1575043694:547917..548101Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1491911889:548233..548624TCONS_00072891-exon-scaffold_86-1491911889:548233..548624Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1510915933:548233..548624TCONS_00072891-exon-scaffold_86-1510915933:548233..548624Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1575043694:548233..548624TCONS_00072891-exon-scaffold_86-1575043694:548233..548624Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1491911889:548734..549049TCONS_00072891-exon-scaffold_86-1491911889:548734..549049Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1510915933:548734..549049TCONS_00072891-exon-scaffold_86-1510915933:548734..549049Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1575043694:548734..549049TCONS_00072891-exon-scaffold_86-1575043694:548734..549049Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1491911889:549239..549643TCONS_00072891-exon-scaffold_86-1491911889:549239..549643Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1510915933:549239..549643TCONS_00072891-exon-scaffold_86-1510915933:549239..549643Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1575043694:549239..549643TCONS_00072891-exon-scaffold_86-1575043694:549239..549643Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1491911889:550454..550522TCONS_00072891-exon-scaffold_86-1491911889:550454..550522Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1510915933:550454..550522TCONS_00072891-exon-scaffold_86-1510915933:550454..550522Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1575043694:550454..550522TCONS_00072891-exon-scaffold_86-1575043694:550454..550522Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1491911889:550752..552241TCONS_00072891-exon-scaffold_86-1491911889:550752..552241Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1510915933:550752..552241TCONS_00072891-exon-scaffold_86-1510915933:550752..552241Clytia hemisphaericaexon
TCONS_00072891-exon-scaffold_86-1575043694:550752..552241TCONS_00072891-exon-scaffold_86-1575043694:550752..552241Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:542317..552241 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0 3.19971e-10 0 0 0 0 1.6443e-10 0.135285 0 0 0 0 0 0 6.76361 21.316 14.8568 24.6726 0 0 0.000669724 0.31382 0 0
Blast
BLAST of TCONS_00072891 vs. Swiss-Prot (Human)
Match: PCKGC (Phosphoenolpyruvate carboxykinase, cytosolic [GTP] OS=Homo sapiens GN=PCK1 PE=1 SV=3)

HSP 1 Score: 816.224 bits (2107), Expect = 0.000e+0
Identity = 377/616 (61.20%), Postives = 474/616 (76.95%), Query Frame = 3
Query:  210 LSKNISVTHGNFETLPNKVKDFVVQKSELCQPDFLHICDGSEDEAQSLADLLVKNGTARKLEKMDNCYAVRTNPADVARVESKTLICTENKHDTVPHTKDGVRCSVGQWTEPKEMKEKLQGLFQGCMKGRTMYVIPFSMGPVGSPLSKIGIELTDSPYVSMSMGVMTRMGSKVLNSLGDGDFVKCSHSVGQPLPLEKPDPYNWPCNPEKTVITHFPADREIISFGSGYGGNSLLGKKCFALRIASAVARDEGWLAEHMLILGLTNPQGEKKYVAAAFPSACGKTNLAMLTPTLPGWKAECVGDDIAWMKFDEEGVLRAINPEYGFFGVAPGTSMETNPQALIACQKNTVFTNCATTDDGEIYWEGLEKEVNLEGRSVTDWLGKPWTKESGTKAAHPNSRFCTPAGNCKVIDPLWEDPKGVPISAILFGGRRPEGVPLIYEAFNWQHGVFVASALCSETTAAAEHKGKAIMRDPFAMRPFFGYNAGHYFKHWLSLEDDKKHQLPKIFHVNWFRKGEDGKFLWPGFGENCRVLKWVFDRVDGKHGVQKSTVGYLPENDALDLNGLDEDLNMKELMSVPTDYWMEQLDDIEKYYNQQFGEDIPQQLWDEVHSFRERLTK 2057
            L+ +  V  G+ ++LP  V++F+   +ELCQPD +HICDGSE+E   L   + + G  R+L+K DNC+   T+P DVAR+ESKT+I T+ + DTVP  K G+   +G+W   ++ ++     F GCMKGRTMYVIPFSMGP+GSPLSKIGIELTDSPYV  SM +MTRMG+ VL ++GDG+FVKC HSVG PLPL+KP   NWPCNPE T+I H P  REIISFGSGYGGNSLLGKKCFALR+AS +A++EGWLAEHMLILG+TNP+GEKKY+AAAFPSACGKTNLAM+ P+LPGWK ECVGDDIAWMKFD +G LRAINPE GFFGVAPGTS++TNP A+   QKNT+FTN A T DG +YWEG+++ +   G ++T W  K W+ E G   AHPNSRFCTPA  C +ID  WE P+GVPI  I+FGGRRP GVPL+YEA +WQHGVFV +A+ SE TAAAEHKGK IM DPFAMRPFFGYN G Y  HWLS+      +LPKIFHVNWFRK ++GKFLWPGFGEN RVL+W+F+R+DGK   + + +GY+P+ DAL+L GL   +NM EL S+  ++W ++++DIEKY   Q   D+P ++  E+ + ++R+++
Sbjct:    9 LNLSAKVVQGSLDSLPQAVREFLENNAELCQPDHIHICDGSEEENGRLLGQMEEEGILRRLKKYDNCWLALTDPRDVARIESKTVIVTQEQRDTVPIPKTGL-SQLGRWMSEEDFEKAFNARFPGCMKGRTMYVIPFSMGPLGSPLSKIGIELTDSPYVVASMRIMTRMGTPVLEAVGDGEFVKCLHSVGCPLPLQKPLVNNWPCNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALRMASRLAKEEGWLAEHMLILGITNPEGEKKYLAAAFPSACGKTNLAMMNPSLPGWKVECVGDDIAWMKFDAQGHLRAINPENGFFGVAPGTSVKTNPNAIKTIQKNTIFTNVAETSDGGVYWEGIDEPL-ASGVTITSWKNKEWSSEDGEPCAHPNSRFCTPASQCPIIDAAWESPEGVPIEGIIFGGRRPAGVPLVYEALSWQHGVFVGAAMRSEATAAAEHKGKIIMHDPFAMRPFFGYNFGKYLAHWLSMAQHPAAKLPKIFHVNWFRKDKEGKFLWPGFGENSRVLEWMFNRIDGKASTKLTPIGYIPKEDALNLKGLGH-INMMELFSISKEFWEKEVEDIEKYLEDQVNADLPCEIEREILALKQRISQ 621          
The following BLAST results are available for this feature:
BLAST of TCONS_00072891 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PCKGC0.000e+061.20Phosphoenolpyruvate carboxykinase, cytosolic [GTP]... [more]
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