TCONS_00072890 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072890
Unique NameTCONS_00072890
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3435

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072890 ID=TCONS_00072890|Name=TCONS_00072890|organism=Clytia hemisphaerica|type=transcript|length=3435bp
aatatttatacAACACATGATATTTATAATCTTCCATTATTTGAGAGgga
ttttaaatttcgaaactttGACCTGTCAGACATGTAAGCATTGCTCAAGA
GAGgaatttaaagtcctttgataCACGTGGTTTAGAGATTTTATcctaaa
atttgaaagaaaaacatatcTGAAAGATAaaggttttgagaaaaattata
gcattccATCGTGACGTCATGACTTTTATAAAAGGCAAGCTAGAAACAGA
GCTGAGATACAGTTAAATAACAGTCAACCGTTTTTAGCAACCTTGCACAA
GAACCTAAACAACTTTAAAGgTTCAGCCTTCACTCAACCCACTTATTTCG
AGCTCTGCAATTACGACAAATGGCATccttatcaaaaaatatttctgtcA
CACATGGCAATTTTGAAACACTCCCAAATAAAGTAAAGGATTTTGTCgta
caaaaaagtgaattatgtCAGCCAGATTTTCTCCACATTTGTGATGGCTC
AGAAGATGAGGCACAAAGCTTAGCTGATCTTCTTGTAAAAAATGGAACTg
caagaaaattggaaaaaatggataATTGcTATGCTGTCCGTACTAATCCA
GCTGATGTTGCACGTGTTGAATCAAAAACGTTGATCTGTACTGAAAATAA
ACATGATACTGTCCCCCACACCAAAGATGGAGTTAGATGTTCAGTTGGAC
AATGGACTGAGCCTAAAGAAATGAAGGAAAAGCTCCAAGGATTATTCCAA
GGATGCATGAAGGGAAGAACCATGTatgttattccattttcaatgGGACC
TGTTGGCTCTCCTTTGTCCAAAATTGGTATTGAACTTACTGATTCTCCAT
ATGTCTCAATGTCTATGGGTGTTATGACTAGAATGGGATCAAAAGTATTG
AATTCTCTGGGTGATGGTGATTTTGTCAAATGTTCTCACTCTGTTGGACA
ACCTTTACCTCTTGAAAAACCAGACCCATATAACTGGCCATGTAATCCAG
AAAAGACTGTTATCACACATTTCCCAGCTGACAGAGAAATCATCTCCTTT
GGATCTGGTTATGGTGGAAACTCACTTCttggaaagaaatgttttgcTTT
GAGAATCGCATCTGCTGTTGCTAGAGATGAAGGATGGTTAGCTGAACACA
TGCTGATCCTTGGATTGACTAACCCACAAGGTGAAAAGAAATATGTTGCT
GCTGCATTTCCAAGTGCTTGTGGAAAGACAAACTTAGCTATGTTAACCCC
AACTTTACCAGGATGGAAAGCAGAATGTGTCGGTGATGATATTGCATGGA
TGAAATTTGACGAGGAAGGTGTCTTGAGAGCTATTAATCCAGAATATGGA
TTCTTTGGTGTTGCCCCCGGAACCTCAATGGAAACCAACCCACAAGCATT
AATTGCTTGTCAGAAGAACACTGTCTTTACTAACTGCGCTACTACTGATG
ATGGTGAAATCTACTGGGAAGGTCTTGAAAAGGAAGTCAACCTTGAAGGT
CGTTCAGTCACTGACTGGTTGGGTAAACCATGGACTAAAGAATCTGGAAC
AAAAGCTGCTCATCCAAACTCTCGATTCTGTACGCCAGCTGGAAATTGCA
AAGTTATCGATCCACTTTGGGAAGATCCTAAAGGTGTCCCAATCTCTGCT
ATCTTGTTTGGTGGACGCCGACCAGAAGGTGTGCCATTGATCTACGAAGC
ATTTAATTGGCAACATGGTGTGTTTGTTGCAAGTGCTCTTTGCTCTGAAA
CGACGGCTGCTGCAGAACACAAAGGCAAAGCTATAATGAGAGATCCCTTC
GCCATGAGACCATTCTTTGGATATAACGCTGGACATTACTTTAAACACTG
GTTGAGTCTTGAAGATGATAAGAAACATCAATTGCCTAAAATTTTCCATG
TCAACTGGTTCAGAAAAGGAGAAGACGGCAAATTCCTATGGCCTGGATTC
GGTGAAAACTGTCGTGTCTTGAAATGGGTTTTCGATCGCGTCGACGGCAA
ACACGGAGTCCAAAAATCCACCGTCGGATATTTACCTGAAAATGACGCAT
TAGACTTAAATGGACTAGATGAAGATTTAAATATGAAAGAACTAATGTCT
GTTCCCACTGACTATTGGATGGAACAACTAGATGATATtgagaaatatta
taatcaacAATTTGGTGAAGATATTCCACAACAATTATGGGATGAAGTAC
ATTCTTTCAGGGAACGATTGACAAAATCTCCTACCGCCGCTTAAATGTGT
TATTTATTGGAAGATGATGATTGTTGTTGATGCTTTTTGTCCTTTTTAAC
cttatatttagaatttttcctACACCatttctgaaaaatgaaaaacaatt
tttatgatGTTGTAGTCACAATCGGACTTGTcattttcttcttattttcC
TCATTTTACTGAGTTGGAATTGTCAATAAGTGTaaaatgattttactttt
ttatttagtgatcGTAAAACAAAATTACACTAAGAAAGCTAAGCTATGCA
CGTTGCTAATATACAATANtttacttttttatttagtgatcGTAAAACAA
AATTACACTAAGAAAGCTAAGCTATACACGTTGCTAATATACAATAGTAT
AGTAAAGAggacttttttagttttagggacttgatttctttttaaagtgt
ttgttcgttttctttttgttaACAGAATTTTTTAATTGTTCAGCTGTatt
taaaaatgctattttatgtctttgttttattttgttatatctttattttt
cagctttcttttggtACAATATACAGTCTTTTTTTTCGTTTATCTGTCAC
GGTATTATTTTTGTTTGGCTAGAGAGATATTTATaagaaatattaaaatt
taaatattatTATCATGTGATAGtttaacatttttgtaaacttcAAGTTT
ATAAGGGAGAATAATTTTTTGTTACTTTGTATCATCTTATTTTAATGCTA
GagtttatatttgttttgtaATATTGACGTTTTTGAAGTCAGTAAAATAC
AacgttttcgaaaaaaaatcaacattgcTGCACGGTTTTATACCCCCTAA
TGAATCGTTCAATTTTTTATTAATATTTGCAGAATCaagatttcaatgtt
tttttccttttactCTTTTCATCAGACGAATTgataagaaattaaatttt
tgcgtttaagagagaaaaaaaacaaatagccAGAAAAAACATAGTCAGCG
AAGATTTTTACCTGATTTCAATATCTCGCCGCTGGCTCACCATAGGATAA
CGATGGATGGCCTCACAATATTATTTcaaactaaagtctgttccaaaaat
gACAGTCAGCACATTTTGATACATTGTCCTTGAAGGTGTAGAGATAAATT
AATATACTGCTAGAAATATCGTTTTGAGTGGATTTCCacctttttaaaac
tttggaaCTTccctgatttcaaatatgtattcgga
Run BLAST on NCBI

transcript from alignment at scaffold_86:542148..552241+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072890 ID=TCONS_00072890|Name=TCONS_00072890|organism=Clytia hemisphaerica|type=transcript|length=10094bp|location=Sequence derived from alignment at scaffold_86:542148..552241+ (Clytia hemisphaerica)
aatatttatacAACACATGATATTTATAATCTTCCATTATTTGAGAGgga
ttttaaatttcgaaactttGACCTGTCAGACATGTAAGCATTGCTCAAGA
GAGgaatttaaagtcctttgataCACGTGGTTTAGAGATTTTATcctaaa
atttgaaagaaaaacatatcTGAAAGATAaaggttttgagaaaaattata
gcattccATCGTGACGTCATGACTTTTATAAAAGGCAAGCTAGAAACAGA
GCTGAGATACAGTTAAATAACAGTCAACCGTTTTTAGCAACCTTGCACAA
GAACCTAAACAACTTTAAAGGTAAGATTTGATGTAATTATTTTGCTAGAT
GGTACGTATAAGTAATAGTGAGATATCAAAGTTTAAGTAGATAAAGAAAG
AAAGTTGTGTAATTTTCGTAAGTTATCTAGAGCTAAAAACAAGTCTTCTt
gggaaaaattaaatactaTTGGATAAAAAATACAACGcaaaaatttttcc
attttatcATGCTTCAGTGGGCAAAACCTAAAAtaataagaaatacttct
tcttTTTATGGAACCCCAAAAATTCCAGGAAAATTGCACGAATTCCAAAA
TCAGTATTCAAAGCAAAGGTTTCATTGTCACATAGAAGCCCAGTTTCGAT
GAACTTTGCAGAATTCTACCAGCATCTAGCACAGTAATCCATCTTAAACT
GAAAATCTTGTGTGTACTGCGCTTTAGCTTGTTCCAGCTTACCTTTTGAA
AAGTTCTTTGAAAAAGATAACtagatatttcaaattttcaaatatgcTTA
GGGAAGAGGAAAATTTGAGGAAATTCAAAGGTACACAATTTTTCCTggaa
aagttaaaaaacataCAGAAAATTCTTCTAGAAAAATAGCAGGATAGCCG
TATTTATCATTATCATTCCCTGATTCAACTTAATCCCTTCAGAAAACTGT
CAACAAAAATATTGTATGCATGGGTTCTCTGAAAAGATTTCTTTATAACT
TCAGCCATAAAAAATCTACAGGTTGGCATGATCCCATGAAATTTATTCTT
GTCtctctatttttctttgccTTGCTTTTGCTTTGCCTTTGCCTGCTTAT
TATTAATTGCATTTTTTAATAATTCTAGATCAATTAgataatttaaaaaa
gtataACTTTCTGCCTCCTGACAAATTGCAGGGTACAAATTCCTGTAAAT
TCCAATTTTCACACATTGAGCAAGACTCAGACACACTGGGTCCAGAAAGC
TAAGCTTTATAAATAGGAAAATGAGGGACACAAAAAGGTActtttgatta
tattttgattCTGAAGTCTTTCCTATAACTGGATCATGTTAAAACTATGA
TAAACCATTGAtgcttttcagaatttttcatgtaaattgaaaattttact
ttgaaaaattcaggcaaactttcaactaaaacCAAAAGTGTCATTTAGAA
ATTGAATCATATTCAGAATGGGCAAATTGGGCATGAAAAATCCAGgcaaa
ctttcaactaaaacCAAAAGTGTCATTTAGAAATTGAATCATATTCAGAA
TGGGCTTTTGTAGTGGCTTGAAGTGGCTttagttttcaaaatatatattg
TTGAGTATGTGACTTTACTATATGATTAATGAGATTGGATATTTTTGCTG
GAGGTTAacttgtttttttaaatcaaaaaatttccatggaaaatcttatt
tttagtttgcttttacttacttttgatacttttgatggGTTTTTAGAGTC
TCTCAATCATTCCATTTGGATTTTAGATGCCCAAAAAtacatttcattat
tttccctTTAGATTTAGGACATAATGTCACTGGAGATATTATGCAAAAAG
AACTGATTCAAAAGCTTATTTACCATGAAATCAAAATCTTGTCCAAATCA
AGAATATATTTTACAGACAATCGCTAGACATTTGTGACACTTTGTAAACT
TGTTTGAATGTGCACTTTTAAACTCGGTGTGCAGACGCTTAGTTATAAGT
TATATGAAACACATTAAGATATTGATCTACTAGGCTATCTACTATGGAAT
TTGGAgtaccaaattttcaaaaagattttgataaTTCAATCACTTTTTTA
ACAACCCTTCGAAGACTCAATAACCGTAcatactttgattgttattaaTT
AATTTCGATAAACTCAACACAACCAATTGATTACTTCTATAACTATTGAT
tacttaaagtctgtctcaatataatttgacaaaaaaggctataacttttg
atagaattcaaatTAGATAgcagttttgtgcttgttgagaagacaaacag
gagtggaacattatcataaagaaaaaattcaaaaaagattgaaaaacaaa
gatggaaatgaagaagaagaaaatcaacttcttcaataattgtgcttata
attatcattttcacacgagtgattcTTTGACCTTAGAGCATCATTAATGT
GAAaaacaatcttcaaaaaaatttattttatccaaagatatagtccaaag
tttgtcactgattgacttcaaaaaccatcaaaaacaaacaaaaaagagcc
cttttttaagtcaaccagcgacaaagttttaagctgtattttttgactga
agcaatattttgtgattttatttCGTATATCTATGATGTtctaaagatta
aagaatttttaatatgaaaatgaaaatcatagcattattcaacaagaagt
tgattttctactatcttatttttcatctttgtttttcaatttttttaatt
tttttcttttttgacagtttACAGTAGTGGAAGTACCTCGATTTTAAGCA
TGTTCAaaaagttcacaataacgactttctttttataacggAAACCAAAC
GAGTAAGAAAAAGTCAAGCAACTAAATCTCAGCGCTCCGTGGTTGTGACG
tagtttacaaaattgttaagatataatgacatactttttaacaacttttt
tctatgtcatttttgaagcctcttcGTAGGAGAATTTTATtacacttcat
ggcagattaaaaagacgattagaaaacgaaagcttcttcatttttcattt
ttgcatttaaggggaagaatgaaattttcagaagattatttatttgatat
gaggattcccatttccgtaaaATTGCAATTCCTCATGGTTGTGAAATGgt
ggctatgggtaattcctttgttcttttgccaTTTTCATTTGTTCTATGTG
ACGTAAAGATGCTTCACAAATCAAAGTATTTCCACTAACTGTTTGATAAT
ATTCAACTCtgaaatatctttttaatgagCACAAAACCAATATCTATCAG
AAGTTATAGCCTTGGTTGTCTCTATTGCAAATTATGTTGAGACAAACTTT
agataaccaattgattacATATATAGTATAGATgtctttaagaaaaacca
aaaacattgacctTAAAACCAAAGCACAATAAGAAGCAGCAGCAGCCATA
AGAATAACCTTCAGTAATTACCCCACCATTTTGTGTGGGTTTCCCGAAGT
AACTCATATCGTGCATTCTGATTGATCGGAGAAAAACAAAGTGGTTTTCG
CGCGTGATTTTTATTAAAGAAGAATATGTTGAAATTAGAAagagatgtcg
acattagaccaacttacagtaattaattagttattcaaaagacgaAAGAC
CGTCATGTTCCTTTATTTATATGCTAATGACAAATGAACAGCATGGCAGT
GCTTGGAACCAAAACTGTTGATAAGAATCTGCCAAAccaaacaatcaaaa
caaaacacccCCACCACCCACAGTCcactttgaaaacaaaatttaaaaat
tgaatagaaaaccTTTTTCATCTTTGTGCCAGTAAGtccagtgaaaaaaa
attttgtttctaaaaatgAACTCACAGCTCTCTAAAAATATTATctgtta
aaagtaaaaaaaggaCGGTGTGTAGTTATAGTTGGTAGAGTTATTTCCTC
TCTTCTCTAACTAATAATTCTCACTGAACTAAATTTCCTTACATTTAGTG
GTGTTGTTTGCTGTTCATTCATTACACATCCCTTACACTATATAAAGAgg
tttttaaaatctgaaacattaaaaattttgttaagattttgacttttttt
gatgtTGATGTCGCTATCAAAGATGGCGGGTTTCCCGCCagaaattgtaa
acaaaaactaGCCTGTGAAACCTATTCCGGTCCTTGAAATATCACAGGAA
TAGAATTTTGGTTCggtaaaataaatcaaaagaatttgataatGAGATTT
CCTGATTTCATGAATGTGCAAAGTTGCCCAGGGAATTTGATAAGCACGTT
GCACTCAGTGGCTGGAGAAGGCGACACAAAAATCactttaaactaaaatt
gctcGAGGTTTTAAAGTACAACAAAAATGGCACCATATGCTAAGCTACTC
ACAAGGTATACAATTTTTGTTTACACCAAATTTCTcggaatttttttgca
aaatgaagtcattgcaaagcaatttaaaaaaataaattttactcGACTGT
TCGATTCGATGAATTTGAGGCTTTTGTAGTTTTTATTCCTTGACTCTCAT
GGACATAGATCAGCATGATTTGTTTATAGAACAAGGTATATTGTTTTGTT
TGCAGTATAGTtgttaaaaaagttttgtttgttttggctTATGACATTGT
TTTTATTACAAACTTTCGaccttttgttcttatttattttGTGTTGATGG
GACTTTTTATAGCAgtatttgactgaaatttgaaaCCTTTTATAAAGCAC
TCAATGCCTTTTTACTTCCGCGTCTATAACAAGTTTTTAGATAGATTTAT
CTATTTTTGTGAGTTTTGGACGCATTCAACCGAAAATATAgaaacatttt
tagatttcttacTCCTAAACTAAATTATTCATGATCAATACAAGAGTTTC
CAATCCCTATACAAATGACCTCTTTTCAATCTCTAAGCTATGATTCCTAT
AATATTTCTTGACTTCATTCATCCCGTTTAAGGATTTGAATATGTCTTTT
AAatacaaaatttagaaatgtaAAAATGGCTTTACAATTAATGATAGGAA
CTTATCAGTTAGATTTAAATAGTTTTTAAAGATTAATGTCTTgcattaag
aagattaaaagaCATTTAAGAGTTTCTATTGCTCAAAACAGTTAGACTCA
CACCTTAATTTAAACCCTATTGTCAAGACACAAAAATTGAAATGCTAGAA
TTCTAAGTACCTTATAACCAACCTATatgtaaaatagaaaatgaaccACT
GAACTGACTTggatattttttaattcaagggTTTATTTTATAGATAAACT
TGGCACTACATTAGACATTCCCATACTTTCCCATTAATTCAAAAGACTCC
TCAAAATCAAAAGCgtgaaaatgttatatttttgtttcaggTTCAGCCTT
CACTCAACCCACTTATTTCGAGCTCTGCAATTACGACAAATGGCATcctt
atcaaaaaatatttctgtcACACATGGCAATTTTGAAACACTCCCAAATA
AAGTAAAGGATTTTGTCgtacaaaaaagtgaattatgtCAGCCAGATTTT
CTCCACATTTGTGATGGCTCAGAAGATGAGGCACAAAGCTTAGCTGATCT
TCTTGTAAAAAATGGAACTgcaagaaaattggaaaaaatggataATTGGT
AAGAATGCACTTATGATTACTATTAACAAAGAATACCTCCACTCACTTTT
AACTaaaaaccattttgatttttttaatcaaaattgtcatGATAAAGATT
gaatattctttatttttagcTATGCTGTCCGTACTAATCCAGCTGATGTT
GCACGTGTTGAATCAAAAACGTTGATCTGTACTGAAAATAAACATGATAC
TGTCCCCCACACCAAAGATGGAGTTAGATGTTCAGTTGGACAATGGACTG
AGCCTAAAGAAATGAAGGAAAAGCTCCAAGGATTATTCCAAGGATGCATG
AAGGGTAAAGATTTGAGATTTGAAATTATACTTAATACATTGCTCTGATT
TGTGAGTGTTTTTTACATGGTTTTCACATGGTTATGTTTCatctgatttt
ttgtttttattcatgATCTCTTTTGTATCTTATAGGAAGAACCATGTatg
ttattccattttcaatgGGACCTGTTGGCTCTCCTTTGTCCAAAATTGGT
ATTGAACTTACTGATTCTCCATATGTCTCAATGTCTATGGGTGTTATGAC
TAGAATGGGATCAAAAGTATTGAATTCTCTGGGTGATGGTGATTTTGTCA
AATGTTCTCACTCTGTTGGACAACCTTTACCTCTTGAAAAACCAGACCCA
TATAACTGGCCATGTAATCCAGAAAAGACTGTTATCACACATTTCCCAGC
TGACAGAGAAATCATCTCCTTTGGATCTGGTTATGGTGGAAACTCACTTC
ttggaaagaaatgttttgcTTTGAGAATCGCATCTGCTGTTGCTAGAGAT
GAAGGATGGTTAGCTGAACACATGCTGGTATGTTCTCATTCCCCTTGAAT
TCGCAAAGTTAATTTATTCATGCTATCAAGTGCTATCTATGAAATCTGAA
AAGTAACTAATTGGTTTTCATTGTCACCTCTTTTAGATCCTTGGATTGAC
TAACCCACAAGGTGAAAAGAAATATGTTGCTGCTGCATTTCCAAGTGCTT
GTGGAAAGACAAACTTAGCTATGTTAACCCCAACTTTACCAGGATGGAAA
GCAGAATGTGTCGGTGATGATATTGCATGGATGAAATTTGACGAGGAAGG
TGTCTTGAGAGCTATTAATCCAGAATATGGATTCTTTGGTGTTGCCCCCG
GAACCTCAATGGAAACCAACCCACAAGCATTAATTGCTTGTCAGAAGAAC
ACTGTCTTTACTAACTGCGCTACTACTGATGATGGTGAAATCTACTGGGA
AGGTACAAcaagatcaaatttaatttctcaGACTTCTTCTTGCCCTTTTT
TAATTGCTGGAAATGatcatcaatttttaaaaatgactGAAGTTCTTAAG
CTACACTCTATTAATTTCGCTATCAATGCGCTAATCTGTATTCATGATTC
ATGAATATTAATTCGattaatttgatgaattttttctcCAGGTCTTGAAA
AGGAAGTCAACCTTGAAGGTCGTTCAGTCACTGACTGGTTGGGTAAACCA
TGGACTAAAGAATCTGGAACAAAAGCTGCTCATCCAAACTCTCGATTCTG
TACGCCAGCTGGAAATTGCAAAGTTATCGATCCACTTTGGGAAGATCCTA
AAGGTGTCCCAATCTCTGCTATTTTGTTTGGTGGACGCCGACCAGAAGGT
GTGCCATTGATCTACGAAGCATTTAATTGGCAACATGGTGTGTTTGTTGC
AAGTGCTCTTTGCTCTGAAACGACGGCTGCTGCAGAACACAAAGGCAAAG
CTATAATGAGAGATCCCTTCGCCATGAGACCATTCTTTGGATATAACGCT
GGACATTACTTTAAACACTGGCTGAGTCTTGAAGATGATAAGAAACATCA
ATTGCCTAAAATTTTCCATGTCAACTGGTTCAGGAAAGGAGAAGACGGCA
AATTCCTATGGCCTGGTAAGTCCTTGTTTACATTCTCATGGCTCTCTTTC
ATTTCATATAGACTTTACAAATTAANACCAACCCACAAGCATTAATTGCT
TGTCAGAAGAACACTGTCTTTACTAACTGCGCTACTACTGATGATGGTGA
AATCTACTGGGAAGGTACGAcaagatcaaatttaatttctcaGACTTCTT
CTTGCCCTTTTTTAATTGCTGGAAATGatcatcaatttttaaaaatgact
GAAGTTCTTAAGCTACTCTATTCATTTCGCTATCAATGCGCTAATCTGTA
TTCATGATTCATGAATATTAATTCGattaatttgatgaattttttctcCA
GGTCTTGAAAAGGAAGTCAACCTTGAAGGTCGTTCAGTCACTGACTGGTT
GGGTAAACCATGGACTAAAGAATCTGGAACAAAAGCTGCTCATCCAAACT
CTCGATTCTGTACGCCAGCTGGAAATTGCAAAGTTATCGATCCACTTTGG
GAAGATCCTAAAGGTGTCCCAATCTCTGCTATCTTGTTTGGTGGACGCCG
ACCAGAAGGTGTGCCATTGATCTACGAAGCATTTAATTGGCAACATGGTG
TGTTTGTTGCAAGTGCTCTTTGCTCTGAAACGACGGCTGCTGCAGAACAC
AAAGGCAAAGCTATAATGAGAGATCCCTTCGCCATGAGACCATTCTTTGG
ATATAACGCTGGACATTACTTTAAACACTGGTTGAGTCTTGAAGATGATA
AGAAACATCAATTGCCTAAAATTTTCCATGTCAACTGGTTCAGAAAAGGA
GAAGACGGCAAATTCCTATGGCCTGGTAAGTCCTTGTTTACATTCTCATG
GCTCTCTTTCATTTCATATAgacttttcaaattatttgtGAACCTTTCCT
CttcattttataaaatttccTTGAATACCAGTTTGAAAGACTAAAATCTC
TCATATTAAAAATGGCATGCAATCTCAAAGGAGGGATTATAATAGTTTTC
TTAGCTGTAGTTTCCAAACAACCTATAACAATTAcaataattttcatatt
tcagGATTCGGTGAAAACTGTCGTGTCTTGAAATGGGTTTTCGATCGCGT
CGACGGCAAACACGGAGTCCAAAAATCCACCGTCGGATATTTACCTGAAA
ATGACGCATTAGACTTAAATGGACTAGATGAAGATTTAAATATGAAAGAA
CTAATGTCTGTTCCCACTGACTATTGGATGGAACAACTAGATGATATtga
gaaatattataatcaacAATTTGGTGAAGATATTCCACAACAATTATGGG
ATGAAGTACATTCTTTCAGGGAACGATTGACAAAATCTCCTACCGCCGCT
TAAATGTGTTATTTATTGGAAGATGATGATTGTTGTTGATGCTTTTTGTC
CTTTTTAACcttatatttagaatttttcctACACCatttctgaaaaatga
aaaacaatttttatgatGTTGTAGTCACAATCGGACTTGTcattttcttc
ttattttcCTCATTTTACTGAGTTGGAATTGTCAATAAGTGTaaaatgat
tttacttttttatttagtgatcGTAAAACAAAATTACACTAAGAAAGCTA
AGCTATGCACGTTGCTAATATACAATANtttacttttttatttagtgatc
GTAAAACAAAATTACACTAAGAAAGCTAAGCTATACACGTTGCTAATATA
CAATAGTATAGTAAAGAggacttttttagttttagggacttgatttcttt
ttaaagtgtttgttcgttttctttttgttaACAGAATTTTTTAATTGTTC
AGCTGTatttaaaaatgctattttatgtctttgttttattttgttatatc
tttatttttcagctttcttttggtACAATATACAGTCTTTTTTTTCGTTT
ATCTGTCACGGTATTATTTTTGTTTGGCTAGAGAGATATTTATaagaaat
attaaaatttaaatattatTATCATGTGATAGtttaacatttttgtaaac
ttcAAGTTTATAAGGGAGAATAATTTTTTGTTACTTTGTATCATCTTATT
TTAATGCTAGagtttatatttgttttgtaATATTGACGTTTTTGAAGTCA
GTAAAATACAacgttttcgaaaaaaaatcaacattgcTGCACGGTTTTAT
ACCCCCTAATGAATCGTTCAATTTTTTATTAATATTTGCAGAATCaagat
ttcaatgtttttttccttttactCTTTTCATCAGACGAATTgataagaaa
ttaaatttttgcgtttaagagagaaaaaaaacaaatagccAGAAAAAACA
TAGTCAGCGAAGATTTTTACCTGATTTCAATATCTCGCCGCTGGCTCACC
ATAGGATAACGATGGATGGCCTCACAATATTATTTcaaactaaagtctgt
tccaaaaatgACAGTCAGCACATTTTGATACATTGTCCTTGAAGGTGTAG
AGATAAATTAATATACTGCTAGAAATATCGTTTTGAGTGGATTTCCacct
ttttaaaactttggaaCTTccctgatttcaaatatgtattcgga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045230XLOC_045230Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072890-exon-scaffold_86-1491911889:542148..542467TCONS_00072890-exon-scaffold_86-1491911889:542148..542467Clytia hemisphaericaexon
TCONS_00072890-exon-scaffold_86-1510915933:542148..542467TCONS_00072890-exon-scaffold_86-1510915933:542148..542467Clytia hemisphaericaexon
TCONS_00072890-exon-scaffold_86-1575043694:542148..542467TCONS_00072890-exon-scaffold_86-1575043694:542148..542467Clytia hemisphaericaexon
TCONS_00072890-exon-scaffold_86-1491911889:547538..547795TCONS_00072890-exon-scaffold_86-1491911889:547538..547795Clytia hemisphaericaexon
TCONS_00072890-exon-scaffold_86-1510915933:547538..547795TCONS_00072890-exon-scaffold_86-1510915933:547538..547795Clytia hemisphaericaexon
TCONS_00072890-exon-scaffold_86-1575043694:547538..547795TCONS_00072890-exon-scaffold_86-1575043694:547538..547795Clytia hemisphaericaexon
TCONS_00072890-exon-scaffold_86-1491911889:547917..548101TCONS_00072890-exon-scaffold_86-1491911889:547917..548101Clytia hemisphaericaexon
TCONS_00072890-exon-scaffold_86-1510915933:547917..548101TCONS_00072890-exon-scaffold_86-1510915933:547917..548101Clytia hemisphaericaexon
TCONS_00072890-exon-scaffold_86-1575043694:547917..548101TCONS_00072890-exon-scaffold_86-1575043694:547917..548101Clytia hemisphaericaexon
TCONS_00072890-exon-scaffold_86-1491911889:548233..548624TCONS_00072890-exon-scaffold_86-1491911889:548233..548624Clytia hemisphaericaexon
TCONS_00072890-exon-scaffold_86-1510915933:548233..548624TCONS_00072890-exon-scaffold_86-1510915933:548233..548624Clytia hemisphaericaexon
TCONS_00072890-exon-scaffold_86-1575043694:548233..548624TCONS_00072890-exon-scaffold_86-1575043694:548233..548624Clytia hemisphaericaexon
TCONS_00072890-exon-scaffold_86-1491911889:548734..549049TCONS_00072890-exon-scaffold_86-1491911889:548734..549049Clytia hemisphaericaexon
TCONS_00072890-exon-scaffold_86-1510915933:548734..549049TCONS_00072890-exon-scaffold_86-1510915933:548734..549049Clytia hemisphaericaexon
TCONS_00072890-exon-scaffold_86-1575043694:548734..549049TCONS_00072890-exon-scaffold_86-1575043694:548734..549049Clytia hemisphaericaexon
TCONS_00072890-exon-scaffold_86-1491911889:550049..550522TCONS_00072890-exon-scaffold_86-1491911889:550049..550522Clytia hemisphaericaexon
TCONS_00072890-exon-scaffold_86-1510915933:550049..550522TCONS_00072890-exon-scaffold_86-1510915933:550049..550522Clytia hemisphaericaexon
TCONS_00072890-exon-scaffold_86-1575043694:550049..550522TCONS_00072890-exon-scaffold_86-1575043694:550049..550522Clytia hemisphaericaexon
TCONS_00072890-exon-scaffold_86-1491911889:550752..552241TCONS_00072890-exon-scaffold_86-1491911889:550752..552241Clytia hemisphaericaexon
TCONS_00072890-exon-scaffold_86-1510915933:550752..552241TCONS_00072890-exon-scaffold_86-1510915933:550752..552241Clytia hemisphaericaexon
TCONS_00072890-exon-scaffold_86-1575043694:550752..552241TCONS_00072890-exon-scaffold_86-1575043694:550752..552241Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:542148..552241 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.238575	0	0	0.187398	0.000398941	0.00025391	5.43929e-06	0.0140926	0.0112388	0.0711578	9.43312e-06	1.68877e-05	1.87539	0.0822185	0.178454	0.00133686	1.82258	0.354184	0.451477	2.84887	0.330647	0.921653	0.184186	0.0683994	0.010874	0
Blast
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BLAST of TCONS_00072890 vs. Swiss-Prot (Human)
Match: PCKGC (Phosphoenolpyruvate carboxykinase, cytosolic [GTP] OS=Homo sapiens GN=PCK1 PE=1 SV=3)

HSP 1 Score: 816.224 bits (2107), Expect = 0.000e+0
Identity = 377/616 (61.20%), Postives = 474/616 (76.95%), Query Frame = 1 
Query:  379 LSKNISVTHGNFETLPNKVKDFVVQKSELCQPDFLHICDGSEDEAQSLADLLVKNGTARKLEKMDNCYAVRTNPADVARVESKTLICTENKHDTVPHTKDGVRCSVGQWTEPKEMKEKLQGLFQGCMKGRTMYVIPFSMGPVGSPLSKIGIELTDSPYVSMSMGVMTRMGSKVLNSLGDGDFVKCSHSVGQPLPLEKPDPYNWPCNPEKTVITHFPADREIISFGSGYGGNSLLGKKCFALRIASAVARDEGWLAEHMLILGLTNPQGEKKYVAAAFPSACGKTNLAMLTPTLPGWKAECVGDDIAWMKFDEEGVLRAINPEYGFFGVAPGTSMETNPQALIACQKNTVFTNCATTDDGEIYWEGLEKEVNLEGRSVTDWLGKPWTKESGTKAAHPNSRFCTPAGNCKVIDPLWEDPKGVPISAILFGGRRPEGVPLIYEAFNWQHGVFVASALCSETTAAAEHKGKAIMRDPFAMRPFFGYNAGHYFKHWLSLEDDKKHQLPKIFHVNWFRKGEDGKFLWPGFGENCRVLKWVFDRVDGKHGVQKSTVGYLPENDALDLNGLDEDLNMKELMSVPTDYWMEQLDDIEKYYNQQFGEDIPQQLWDEVHSFRERLTK 2226
            L+ +  V  G+ ++LP  V++F+   +ELCQPD +HICDGSE+E   L   + + G  R+L+K DNC+   T+P DVAR+ESKT+I T+ + DTVP  K G+   +G+W   ++ ++     F GCMKGRTMYVIPFSMGP+GSPLSKIGIELTDSPYV  SM +MTRMG+ VL ++GDG+FVKC HSVG PLPL+KP   NWPCNPE T+I H P  REIISFGSGYGGNSLLGKKCFALR+AS +A++EGWLAEHMLILG+TNP+GEKKY+AAAFPSACGKTNLAM+ P+LPGWK ECVGDDIAWMKFD +G LRAINPE GFFGVAPGTS++TNP A+   QKNT+FTN A T DG +YWEG+++ +   G ++T W  K W+ E G   AHPNSRFCTPA  C +ID  WE P+GVPI  I+FGGRRP GVPL+YEA +WQHGVFV +A+ SE TAAAEHKGK IM DPFAMRPFFGYN G Y  HWLS+      +LPKIFHVNWFRK ++GKFLWPGFGEN RVL+W+F+R+DGK   + + +GY+P+ DAL+L GL   +NM EL S+  ++W ++++DIEKY   Q   D+P ++  E+ + ++R+++
Sbjct:    9 LNLSAKVVQGSLDSLPQAVREFLENNAELCQPDHIHICDGSEEENGRLLGQMEEEGILRRLKKYDNCWLALTDPRDVARIESKTVIVTQEQRDTVPIPKTGL-SQLGRWMSEEDFEKAFNARFPGCMKGRTMYVIPFSMGPLGSPLSKIGIELTDSPYVVASMRIMTRMGTPVLEAVGDGEFVKCLHSVGCPLPLQKPLVNNWPCNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALRMASRLAKEEGWLAEHMLILGITNPEGEKKYLAAAFPSACGKTNLAMMNPSLPGWKVECVGDDIAWMKFDAQGHLRAINPENGFFGVAPGTSVKTNPNAIKTIQKNTIFTNVAETSDGGVYWEGIDEPL-ASGVTITSWKNKEWSSEDGEPCAHPNSRFCTPASQCPIIDAAWESPEGVPIEGIIFGGRRPAGVPLVYEALSWQHGVFVGAAMRSEATAAAEHKGKIIMHDPFAMRPFFGYNFGKYLAHWLSMAQHPAAKLPKIFHVNWFRKDKEGKFLWPGFGENSRVLEWMFNRIDGKASTKLTPIGYIPKEDALNLKGLGH-INMMELFSISKEFWEKEVEDIEKYLEDQVNADLPCEIEREILALKQRISQ 621
The following BLAST results are available for this feature:
BLAST of TCONS_00072890 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PCKGC0.000e+061.20Phosphoenolpyruvate carboxykinase, cytosolic [GTP]... [more]
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