TCONS_00072890 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072890
Unique NameTCONS_00072890
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3435

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072890 ID=TCONS_00072890|Name=TCONS_00072890|organism=Clytia hemisphaerica|type=transcript|length=3435bp
aatatttatacAACACATGATATTTATAATCTTCCATTATTTGAGAGgga
ttttaaatttcgaaactttGACCTGTCAGACATGTAAGCATTGCTCAAGA
GAGgaatttaaagtcctttgataCACGTGGTTTAGAGATTTTATcctaaa
atttgaaagaaaaacatatcTGAAAGATAaaggttttgagaaaaattata
gcattccATCGTGACGTCATGACTTTTATAAAAGGCAAGCTAGAAACAGA
GCTGAGATACAGTTAAATAACAGTCAACCGTTTTTAGCAACCTTGCACAA
GAACCTAAACAACTTTAAAGgTTCAGCCTTCACTCAACCCACTTATTTCG
AGCTCTGCAATTACGACAAATGGCATccttatcaaaaaatatttctgtcA
CACATGGCAATTTTGAAACACTCCCAAATAAAGTAAAGGATTTTGTCgta
caaaaaagtgaattatgtCAGCCAGATTTTCTCCACATTTGTGATGGCTC
AGAAGATGAGGCACAAAGCTTAGCTGATCTTCTTGTAAAAAATGGAACTg
caagaaaattggaaaaaatggataATTGcTATGCTGTCCGTACTAATCCA
GCTGATGTTGCACGTGTTGAATCAAAAACGTTGATCTGTACTGAAAATAA
ACATGATACTGTCCCCCACACCAAAGATGGAGTTAGATGTTCAGTTGGAC
AATGGACTGAGCCTAAAGAAATGAAGGAAAAGCTCCAAGGATTATTCCAA
GGATGCATGAAGGGAAGAACCATGTatgttattccattttcaatgGGACC
TGTTGGCTCTCCTTTGTCCAAAATTGGTATTGAACTTACTGATTCTCCAT
ATGTCTCAATGTCTATGGGTGTTATGACTAGAATGGGATCAAAAGTATTG
AATTCTCTGGGTGATGGTGATTTTGTCAAATGTTCTCACTCTGTTGGACA
ACCTTTACCTCTTGAAAAACCAGACCCATATAACTGGCCATGTAATCCAG
AAAAGACTGTTATCACACATTTCCCAGCTGACAGAGAAATCATCTCCTTT
GGATCTGGTTATGGTGGAAACTCACTTCttggaaagaaatgttttgcTTT
GAGAATCGCATCTGCTGTTGCTAGAGATGAAGGATGGTTAGCTGAACACA
TGCTGATCCTTGGATTGACTAACCCACAAGGTGAAAAGAAATATGTTGCT
GCTGCATTTCCAAGTGCTTGTGGAAAGACAAACTTAGCTATGTTAACCCC
AACTTTACCAGGATGGAAAGCAGAATGTGTCGGTGATGATATTGCATGGA
TGAAATTTGACGAGGAAGGTGTCTTGAGAGCTATTAATCCAGAATATGGA
TTCTTTGGTGTTGCCCCCGGAACCTCAATGGAAACCAACCCACAAGCATT
AATTGCTTGTCAGAAGAACACTGTCTTTACTAACTGCGCTACTACTGATG
ATGGTGAAATCTACTGGGAAGGTCTTGAAAAGGAAGTCAACCTTGAAGGT
CGTTCAGTCACTGACTGGTTGGGTAAACCATGGACTAAAGAATCTGGAAC
AAAAGCTGCTCATCCAAACTCTCGATTCTGTACGCCAGCTGGAAATTGCA
AAGTTATCGATCCACTTTGGGAAGATCCTAAAGGTGTCCCAATCTCTGCT
ATCTTGTTTGGTGGACGCCGACCAGAAGGTGTGCCATTGATCTACGAAGC
ATTTAATTGGCAACATGGTGTGTTTGTTGCAAGTGCTCTTTGCTCTGAAA
CGACGGCTGCTGCAGAACACAAAGGCAAAGCTATAATGAGAGATCCCTTC
GCCATGAGACCATTCTTTGGATATAACGCTGGACATTACTTTAAACACTG
GTTGAGTCTTGAAGATGATAAGAAACATCAATTGCCTAAAATTTTCCATG
TCAACTGGTTCAGAAAAGGAGAAGACGGCAAATTCCTATGGCCTGGATTC
GGTGAAAACTGTCGTGTCTTGAAATGGGTTTTCGATCGCGTCGACGGCAA
ACACGGAGTCCAAAAATCCACCGTCGGATATTTACCTGAAAATGACGCAT
TAGACTTAAATGGACTAGATGAAGATTTAAATATGAAAGAACTAATGTCT
GTTCCCACTGACTATTGGATGGAACAACTAGATGATATtgagaaatatta
taatcaacAATTTGGTGAAGATATTCCACAACAATTATGGGATGAAGTAC
ATTCTTTCAGGGAACGATTGACAAAATCTCCTACCGCCGCTTAAATGTGT
TATTTATTGGAAGATGATGATTGTTGTTGATGCTTTTTGTCCTTTTTAAC
cttatatttagaatttttcctACACCatttctgaaaaatgaaaaacaatt
tttatgatGTTGTAGTCACAATCGGACTTGTcattttcttcttattttcC
TCATTTTACTGAGTTGGAATTGTCAATAAGTGTaaaatgattttactttt
ttatttagtgatcGTAAAACAAAATTACACTAAGAAAGCTAAGCTATGCA
CGTTGCTAATATACAATANtttacttttttatttagtgatcGTAAAACAA
AATTACACTAAGAAAGCTAAGCTATACACGTTGCTAATATACAATAGTAT
AGTAAAGAggacttttttagttttagggacttgatttctttttaaagtgt
ttgttcgttttctttttgttaACAGAATTTTTTAATTGTTCAGCTGTatt
taaaaatgctattttatgtctttgttttattttgttatatctttattttt
cagctttcttttggtACAATATACAGTCTTTTTTTTCGTTTATCTGTCAC
GGTATTATTTTTGTTTGGCTAGAGAGATATTTATaagaaatattaaaatt
taaatattatTATCATGTGATAGtttaacatttttgtaaacttcAAGTTT
ATAAGGGAGAATAATTTTTTGTTACTTTGTATCATCTTATTTTAATGCTA
GagtttatatttgttttgtaATATTGACGTTTTTGAAGTCAGTAAAATAC
AacgttttcgaaaaaaaatcaacattgcTGCACGGTTTTATACCCCCTAA
TGAATCGTTCAATTTTTTATTAATATTTGCAGAATCaagatttcaatgtt
tttttccttttactCTTTTCATCAGACGAATTgataagaaattaaatttt
tgcgtttaagagagaaaaaaaacaaatagccAGAAAAAACATAGTCAGCG
AAGATTTTTACCTGATTTCAATATCTCGCCGCTGGCTCACCATAGGATAA
CGATGGATGGCCTCACAATATTATTTcaaactaaagtctgttccaaaaat
gACAGTCAGCACATTTTGATACATTGTCCTTGAAGGTGTAGAGATAAATT
AATATACTGCTAGAAATATCGTTTTGAGTGGATTTCCacctttttaaaac
tttggaaCTTccctgatttcaaatatgtattcgga
Run BLAST on NCBI

transcript from alignment at scaffold_86:542148..552241+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072890 ID=TCONS_00072890|Name=TCONS_00072890|organism=Clytia hemisphaerica|type=transcript|length=10094bp|location=Sequence derived from alignment at scaffold_86:542148..552241+ (Clytia hemisphaerica)
aatatttatacAACACATGATATTTATAATCTTCCATTATTTGAGAGgga ttttaaatttcgaaactttGACCTGTCAGACATGTAAGCATTGCTCAAGA GAGgaatttaaagtcctttgataCACGTGGTTTAGAGATTTTATcctaaa atttgaaagaaaaacatatcTGAAAGATAaaggttttgagaaaaattata gcattccATCGTGACGTCATGACTTTTATAAAAGGCAAGCTAGAAACAGA GCTGAGATACAGTTAAATAACAGTCAACCGTTTTTAGCAACCTTGCACAA GAACCTAAACAACTTTAAAGGTAAGATTTGATGTAATTATTTTGCTAGAT GGTACGTATAAGTAATAGTGAGATATCAAAGTTTAAGTAGATAAAGAAAG AAAGTTGTGTAATTTTCGTAAGTTATCTAGAGCTAAAAACAAGTCTTCTt gggaaaaattaaatactaTTGGATAAAAAATACAACGcaaaaatttttcc attttatcATGCTTCAGTGGGCAAAACCTAAAAtaataagaaatacttct tcttTTTATGGAACCCCAAAAATTCCAGGAAAATTGCACGAATTCCAAAA TCAGTATTCAAAGCAAAGGTTTCATTGTCACATAGAAGCCCAGTTTCGAT GAACTTTGCAGAATTCTACCAGCATCTAGCACAGTAATCCATCTTAAACT GAAAATCTTGTGTGTACTGCGCTTTAGCTTGTTCCAGCTTACCTTTTGAA AAGTTCTTTGAAAAAGATAACtagatatttcaaattttcaaatatgcTTA GGGAAGAGGAAAATTTGAGGAAATTCAAAGGTACACAATTTTTCCTggaa aagttaaaaaacataCAGAAAATTCTTCTAGAAAAATAGCAGGATAGCCG TATTTATCATTATCATTCCCTGATTCAACTTAATCCCTTCAGAAAACTGT CAACAAAAATATTGTATGCATGGGTTCTCTGAAAAGATTTCTTTATAACT TCAGCCATAAAAAATCTACAGGTTGGCATGATCCCATGAAATTTATTCTT GTCtctctatttttctttgccTTGCTTTTGCTTTGCCTTTGCCTGCTTAT TATTAATTGCATTTTTTAATAATTCTAGATCAATTAgataatttaaaaaa gtataACTTTCTGCCTCCTGACAAATTGCAGGGTACAAATTCCTGTAAAT TCCAATTTTCACACATTGAGCAAGACTCAGACACACTGGGTCCAGAAAGC TAAGCTTTATAAATAGGAAAATGAGGGACACAAAAAGGTActtttgatta tattttgattCTGAAGTCTTTCCTATAACTGGATCATGTTAAAACTATGA TAAACCATTGAtgcttttcagaatttttcatgtaaattgaaaattttact ttgaaaaattcaggcaaactttcaactaaaacCAAAAGTGTCATTTAGAA ATTGAATCATATTCAGAATGGGCAAATTGGGCATGAAAAATCCAGgcaaa ctttcaactaaaacCAAAAGTGTCATTTAGAAATTGAATCATATTCAGAA TGGGCTTTTGTAGTGGCTTGAAGTGGCTttagttttcaaaatatatattg TTGAGTATGTGACTTTACTATATGATTAATGAGATTGGATATTTTTGCTG GAGGTTAacttgtttttttaaatcaaaaaatttccatggaaaatcttatt tttagtttgcttttacttacttttgatacttttgatggGTTTTTAGAGTC TCTCAATCATTCCATTTGGATTTTAGATGCCCAAAAAtacatttcattat tttccctTTAGATTTAGGACATAATGTCACTGGAGATATTATGCAAAAAG AACTGATTCAAAAGCTTATTTACCATGAAATCAAAATCTTGTCCAAATCA AGAATATATTTTACAGACAATCGCTAGACATTTGTGACACTTTGTAAACT TGTTTGAATGTGCACTTTTAAACTCGGTGTGCAGACGCTTAGTTATAAGT TATATGAAACACATTAAGATATTGATCTACTAGGCTATCTACTATGGAAT TTGGAgtaccaaattttcaaaaagattttgataaTTCAATCACTTTTTTA ACAACCCTTCGAAGACTCAATAACCGTAcatactttgattgttattaaTT AATTTCGATAAACTCAACACAACCAATTGATTACTTCTATAACTATTGAT tacttaaagtctgtctcaatataatttgacaaaaaaggctataacttttg atagaattcaaatTAGATAgcagttttgtgcttgttgagaagacaaacag gagtggaacattatcataaagaaaaaattcaaaaaagattgaaaaacaaa gatggaaatgaagaagaagaaaatcaacttcttcaataattgtgcttata attatcattttcacacgagtgattcTTTGACCTTAGAGCATCATTAATGT GAAaaacaatcttcaaaaaaatttattttatccaaagatatagtccaaag tttgtcactgattgacttcaaaaaccatcaaaaacaaacaaaaaagagcc cttttttaagtcaaccagcgacaaagttttaagctgtattttttgactga agcaatattttgtgattttatttCGTATATCTATGATGTtctaaagatta aagaatttttaatatgaaaatgaaaatcatagcattattcaacaagaagt tgattttctactatcttatttttcatctttgtttttcaatttttttaatt tttttcttttttgacagtttACAGTAGTGGAAGTACCTCGATTTTAAGCA TGTTCAaaaagttcacaataacgactttctttttataacggAAACCAAAC GAGTAAGAAAAAGTCAAGCAACTAAATCTCAGCGCTCCGTGGTTGTGACG tagtttacaaaattgttaagatataatgacatactttttaacaacttttt tctatgtcatttttgaagcctcttcGTAGGAGAATTTTATtacacttcat ggcagattaaaaagacgattagaaaacgaaagcttcttcatttttcattt ttgcatttaaggggaagaatgaaattttcagaagattatttatttgatat gaggattcccatttccgtaaaATTGCAATTCCTCATGGTTGTGAAATGgt ggctatgggtaattcctttgttcttttgccaTTTTCATTTGTTCTATGTG ACGTAAAGATGCTTCACAAATCAAAGTATTTCCACTAACTGTTTGATAAT ATTCAACTCtgaaatatctttttaatgagCACAAAACCAATATCTATCAG AAGTTATAGCCTTGGTTGTCTCTATTGCAAATTATGTTGAGACAAACTTT agataaccaattgattacATATATAGTATAGATgtctttaagaaaaacca aaaacattgacctTAAAACCAAAGCACAATAAGAAGCAGCAGCAGCCATA AGAATAACCTTCAGTAATTACCCCACCATTTTGTGTGGGTTTCCCGAAGT AACTCATATCGTGCATTCTGATTGATCGGAGAAAAACAAAGTGGTTTTCG CGCGTGATTTTTATTAAAGAAGAATATGTTGAAATTAGAAagagatgtcg acattagaccaacttacagtaattaattagttattcaaaagacgaAAGAC CGTCATGTTCCTTTATTTATATGCTAATGACAAATGAACAGCATGGCAGT GCTTGGAACCAAAACTGTTGATAAGAATCTGCCAAAccaaacaatcaaaa caaaacacccCCACCACCCACAGTCcactttgaaaacaaaatttaaaaat tgaatagaaaaccTTTTTCATCTTTGTGCCAGTAAGtccagtgaaaaaaa attttgtttctaaaaatgAACTCACAGCTCTCTAAAAATATTATctgtta aaagtaaaaaaaggaCGGTGTGTAGTTATAGTTGGTAGAGTTATTTCCTC TCTTCTCTAACTAATAATTCTCACTGAACTAAATTTCCTTACATTTAGTG GTGTTGTTTGCTGTTCATTCATTACACATCCCTTACACTATATAAAGAgg tttttaaaatctgaaacattaaaaattttgttaagattttgacttttttt gatgtTGATGTCGCTATCAAAGATGGCGGGTTTCCCGCCagaaattgtaa acaaaaactaGCCTGTGAAACCTATTCCGGTCCTTGAAATATCACAGGAA TAGAATTTTGGTTCggtaaaataaatcaaaagaatttgataatGAGATTT CCTGATTTCATGAATGTGCAAAGTTGCCCAGGGAATTTGATAAGCACGTT GCACTCAGTGGCTGGAGAAGGCGACACAAAAATCactttaaactaaaatt gctcGAGGTTTTAAAGTACAACAAAAATGGCACCATATGCTAAGCTACTC ACAAGGTATACAATTTTTGTTTACACCAAATTTCTcggaatttttttgca aaatgaagtcattgcaaagcaatttaaaaaaataaattttactcGACTGT TCGATTCGATGAATTTGAGGCTTTTGTAGTTTTTATTCCTTGACTCTCAT GGACATAGATCAGCATGATTTGTTTATAGAACAAGGTATATTGTTTTGTT TGCAGTATAGTtgttaaaaaagttttgtttgttttggctTATGACATTGT TTTTATTACAAACTTTCGaccttttgttcttatttattttGTGTTGATGG GACTTTTTATAGCAgtatttgactgaaatttgaaaCCTTTTATAAAGCAC TCAATGCCTTTTTACTTCCGCGTCTATAACAAGTTTTTAGATAGATTTAT CTATTTTTGTGAGTTTTGGACGCATTCAACCGAAAATATAgaaacatttt tagatttcttacTCCTAAACTAAATTATTCATGATCAATACAAGAGTTTC CAATCCCTATACAAATGACCTCTTTTCAATCTCTAAGCTATGATTCCTAT AATATTTCTTGACTTCATTCATCCCGTTTAAGGATTTGAATATGTCTTTT AAatacaaaatttagaaatgtaAAAATGGCTTTACAATTAATGATAGGAA CTTATCAGTTAGATTTAAATAGTTTTTAAAGATTAATGTCTTgcattaag aagattaaaagaCATTTAAGAGTTTCTATTGCTCAAAACAGTTAGACTCA CACCTTAATTTAAACCCTATTGTCAAGACACAAAAATTGAAATGCTAGAA TTCTAAGTACCTTATAACCAACCTATatgtaaaatagaaaatgaaccACT GAACTGACTTggatattttttaattcaagggTTTATTTTATAGATAAACT TGGCACTACATTAGACATTCCCATACTTTCCCATTAATTCAAAAGACTCC TCAAAATCAAAAGCgtgaaaatgttatatttttgtttcaggTTCAGCCTT CACTCAACCCACTTATTTCGAGCTCTGCAATTACGACAAATGGCATcctt atcaaaaaatatttctgtcACACATGGCAATTTTGAAACACTCCCAAATA AAGTAAAGGATTTTGTCgtacaaaaaagtgaattatgtCAGCCAGATTTT CTCCACATTTGTGATGGCTCAGAAGATGAGGCACAAAGCTTAGCTGATCT TCTTGTAAAAAATGGAACTgcaagaaaattggaaaaaatggataATTGGT AAGAATGCACTTATGATTACTATTAACAAAGAATACCTCCACTCACTTTT AACTaaaaaccattttgatttttttaatcaaaattgtcatGATAAAGATT gaatattctttatttttagcTATGCTGTCCGTACTAATCCAGCTGATGTT GCACGTGTTGAATCAAAAACGTTGATCTGTACTGAAAATAAACATGATAC TGTCCCCCACACCAAAGATGGAGTTAGATGTTCAGTTGGACAATGGACTG AGCCTAAAGAAATGAAGGAAAAGCTCCAAGGATTATTCCAAGGATGCATG AAGGGTAAAGATTTGAGATTTGAAATTATACTTAATACATTGCTCTGATT TGTGAGTGTTTTTTACATGGTTTTCACATGGTTATGTTTCatctgatttt ttgtttttattcatgATCTCTTTTGTATCTTATAGGAAGAACCATGTatg ttattccattttcaatgGGACCTGTTGGCTCTCCTTTGTCCAAAATTGGT ATTGAACTTACTGATTCTCCATATGTCTCAATGTCTATGGGTGTTATGAC TAGAATGGGATCAAAAGTATTGAATTCTCTGGGTGATGGTGATTTTGTCA AATGTTCTCACTCTGTTGGACAACCTTTACCTCTTGAAAAACCAGACCCA TATAACTGGCCATGTAATCCAGAAAAGACTGTTATCACACATTTCCCAGC TGACAGAGAAATCATCTCCTTTGGATCTGGTTATGGTGGAAACTCACTTC ttggaaagaaatgttttgcTTTGAGAATCGCATCTGCTGTTGCTAGAGAT GAAGGATGGTTAGCTGAACACATGCTGGTATGTTCTCATTCCCCTTGAAT TCGCAAAGTTAATTTATTCATGCTATCAAGTGCTATCTATGAAATCTGAA AAGTAACTAATTGGTTTTCATTGTCACCTCTTTTAGATCCTTGGATTGAC TAACCCACAAGGTGAAAAGAAATATGTTGCTGCTGCATTTCCAAGTGCTT GTGGAAAGACAAACTTAGCTATGTTAACCCCAACTTTACCAGGATGGAAA GCAGAATGTGTCGGTGATGATATTGCATGGATGAAATTTGACGAGGAAGG TGTCTTGAGAGCTATTAATCCAGAATATGGATTCTTTGGTGTTGCCCCCG GAACCTCAATGGAAACCAACCCACAAGCATTAATTGCTTGTCAGAAGAAC ACTGTCTTTACTAACTGCGCTACTACTGATGATGGTGAAATCTACTGGGA AGGTACAAcaagatcaaatttaatttctcaGACTTCTTCTTGCCCTTTTT TAATTGCTGGAAATGatcatcaatttttaaaaatgactGAAGTTCTTAAG CTACACTCTATTAATTTCGCTATCAATGCGCTAATCTGTATTCATGATTC ATGAATATTAATTCGattaatttgatgaattttttctcCAGGTCTTGAAA AGGAAGTCAACCTTGAAGGTCGTTCAGTCACTGACTGGTTGGGTAAACCA TGGACTAAAGAATCTGGAACAAAAGCTGCTCATCCAAACTCTCGATTCTG TACGCCAGCTGGAAATTGCAAAGTTATCGATCCACTTTGGGAAGATCCTA AAGGTGTCCCAATCTCTGCTATTTTGTTTGGTGGACGCCGACCAGAAGGT GTGCCATTGATCTACGAAGCATTTAATTGGCAACATGGTGTGTTTGTTGC AAGTGCTCTTTGCTCTGAAACGACGGCTGCTGCAGAACACAAAGGCAAAG CTATAATGAGAGATCCCTTCGCCATGAGACCATTCTTTGGATATAACGCT GGACATTACTTTAAACACTGGCTGAGTCTTGAAGATGATAAGAAACATCA ATTGCCTAAAATTTTCCATGTCAACTGGTTCAGGAAAGGAGAAGACGGCA AATTCCTATGGCCTGGTAAGTCCTTGTTTACATTCTCATGGCTCTCTTTC ATTTCATATAGACTTTACAAATTAANACCAACCCACAAGCATTAATTGCT TGTCAGAAGAACACTGTCTTTACTAACTGCGCTACTACTGATGATGGTGA AATCTACTGGGAAGGTACGAcaagatcaaatttaatttctcaGACTTCTT CTTGCCCTTTTTTAATTGCTGGAAATGatcatcaatttttaaaaatgact GAAGTTCTTAAGCTACTCTATTCATTTCGCTATCAATGCGCTAATCTGTA TTCATGATTCATGAATATTAATTCGattaatttgatgaattttttctcCA GGTCTTGAAAAGGAAGTCAACCTTGAAGGTCGTTCAGTCACTGACTGGTT GGGTAAACCATGGACTAAAGAATCTGGAACAAAAGCTGCTCATCCAAACT CTCGATTCTGTACGCCAGCTGGAAATTGCAAAGTTATCGATCCACTTTGG GAAGATCCTAAAGGTGTCCCAATCTCTGCTATCTTGTTTGGTGGACGCCG ACCAGAAGGTGTGCCATTGATCTACGAAGCATTTAATTGGCAACATGGTG TGTTTGTTGCAAGTGCTCTTTGCTCTGAAACGACGGCTGCTGCAGAACAC AAAGGCAAAGCTATAATGAGAGATCCCTTCGCCATGAGACCATTCTTTGG ATATAACGCTGGACATTACTTTAAACACTGGTTGAGTCTTGAAGATGATA AGAAACATCAATTGCCTAAAATTTTCCATGTCAACTGGTTCAGAAAAGGA GAAGACGGCAAATTCCTATGGCCTGGTAAGTCCTTGTTTACATTCTCATG GCTCTCTTTCATTTCATATAgacttttcaaattatttgtGAACCTTTCCT CttcattttataaaatttccTTGAATACCAGTTTGAAAGACTAAAATCTC TCATATTAAAAATGGCATGCAATCTCAAAGGAGGGATTATAATAGTTTTC TTAGCTGTAGTTTCCAAACAACCTATAACAATTAcaataattttcatatt tcagGATTCGGTGAAAACTGTCGTGTCTTGAAATGGGTTTTCGATCGCGT CGACGGCAAACACGGAGTCCAAAAATCCACCGTCGGATATTTACCTGAAA ATGACGCATTAGACTTAAATGGACTAGATGAAGATTTAAATATGAAAGAA CTAATGTCTGTTCCCACTGACTATTGGATGGAACAACTAGATGATATtga gaaatattataatcaacAATTTGGTGAAGATATTCCACAACAATTATGGG ATGAAGTACATTCTTTCAGGGAACGATTGACAAAATCTCCTACCGCCGCT TAAATGTGTTATTTATTGGAAGATGATGATTGTTGTTGATGCTTTTTGTC CTTTTTAACcttatatttagaatttttcctACACCatttctgaaaaatga aaaacaatttttatgatGTTGTAGTCACAATCGGACTTGTcattttcttc ttattttcCTCATTTTACTGAGTTGGAATTGTCAATAAGTGTaaaatgat tttacttttttatttagtgatcGTAAAACAAAATTACACTAAGAAAGCTA AGCTATGCACGTTGCTAATATACAATANtttacttttttatttagtgatc GTAAAACAAAATTACACTAAGAAAGCTAAGCTATACACGTTGCTAATATA CAATAGTATAGTAAAGAggacttttttagttttagggacttgatttcttt ttaaagtgtttgttcgttttctttttgttaACAGAATTTTTTAATTGTTC AGCTGTatttaaaaatgctattttatgtctttgttttattttgttatatc tttatttttcagctttcttttggtACAATATACAGTCTTTTTTTTCGTTT ATCTGTCACGGTATTATTTTTGTTTGGCTAGAGAGATATTTATaagaaat attaaaatttaaatattatTATCATGTGATAGtttaacatttttgtaaac ttcAAGTTTATAAGGGAGAATAATTTTTTGTTACTTTGTATCATCTTATT TTAATGCTAGagtttatatttgttttgtaATATTGACGTTTTTGAAGTCA GTAAAATACAacgttttcgaaaaaaaatcaacattgcTGCACGGTTTTAT ACCCCCTAATGAATCGTTCAATTTTTTATTAATATTTGCAGAATCaagat ttcaatgtttttttccttttactCTTTTCATCAGACGAATTgataagaaa ttaaatttttgcgtttaagagagaaaaaaaacaaatagccAGAAAAAACA TAGTCAGCGAAGATTTTTACCTGATTTCAATATCTCGCCGCTGGCTCACC ATAGGATAACGATGGATGGCCTCACAATATTATTTcaaactaaagtctgt tccaaaaatgACAGTCAGCACATTTTGATACATTGTCCTTGAAGGTGTAG AGATAAATTAATATACTGCTAGAAATATCGTTTTGAGTGGATTTCCacct ttttaaaactttggaaCTTccctgatttcaaatatgtattcgga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045230XLOC_045230Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072890-exon-scaffold_86-1491911889:542148..542467TCONS_00072890-exon-scaffold_86-1491911889:542148..542467Clytia hemisphaericaexon
TCONS_00072890-exon-scaffold_86-1510915933:542148..542467TCONS_00072890-exon-scaffold_86-1510915933:542148..542467Clytia hemisphaericaexon
TCONS_00072890-exon-scaffold_86-1575043694:542148..542467TCONS_00072890-exon-scaffold_86-1575043694:542148..542467Clytia hemisphaericaexon
TCONS_00072890-exon-scaffold_86-1491911889:547538..547795TCONS_00072890-exon-scaffold_86-1491911889:547538..547795Clytia hemisphaericaexon
TCONS_00072890-exon-scaffold_86-1510915933:547538..547795TCONS_00072890-exon-scaffold_86-1510915933:547538..547795Clytia hemisphaericaexon
TCONS_00072890-exon-scaffold_86-1575043694:547538..547795TCONS_00072890-exon-scaffold_86-1575043694:547538..547795Clytia hemisphaericaexon
TCONS_00072890-exon-scaffold_86-1491911889:547917..548101TCONS_00072890-exon-scaffold_86-1491911889:547917..548101Clytia hemisphaericaexon
TCONS_00072890-exon-scaffold_86-1510915933:547917..548101TCONS_00072890-exon-scaffold_86-1510915933:547917..548101Clytia hemisphaericaexon
TCONS_00072890-exon-scaffold_86-1575043694:547917..548101TCONS_00072890-exon-scaffold_86-1575043694:547917..548101Clytia hemisphaericaexon
TCONS_00072890-exon-scaffold_86-1491911889:548233..548624TCONS_00072890-exon-scaffold_86-1491911889:548233..548624Clytia hemisphaericaexon
TCONS_00072890-exon-scaffold_86-1510915933:548233..548624TCONS_00072890-exon-scaffold_86-1510915933:548233..548624Clytia hemisphaericaexon
TCONS_00072890-exon-scaffold_86-1575043694:548233..548624TCONS_00072890-exon-scaffold_86-1575043694:548233..548624Clytia hemisphaericaexon
TCONS_00072890-exon-scaffold_86-1491911889:548734..549049TCONS_00072890-exon-scaffold_86-1491911889:548734..549049Clytia hemisphaericaexon
TCONS_00072890-exon-scaffold_86-1510915933:548734..549049TCONS_00072890-exon-scaffold_86-1510915933:548734..549049Clytia hemisphaericaexon
TCONS_00072890-exon-scaffold_86-1575043694:548734..549049TCONS_00072890-exon-scaffold_86-1575043694:548734..549049Clytia hemisphaericaexon
TCONS_00072890-exon-scaffold_86-1491911889:550049..550522TCONS_00072890-exon-scaffold_86-1491911889:550049..550522Clytia hemisphaericaexon
TCONS_00072890-exon-scaffold_86-1510915933:550049..550522TCONS_00072890-exon-scaffold_86-1510915933:550049..550522Clytia hemisphaericaexon
TCONS_00072890-exon-scaffold_86-1575043694:550049..550522TCONS_00072890-exon-scaffold_86-1575043694:550049..550522Clytia hemisphaericaexon
TCONS_00072890-exon-scaffold_86-1491911889:550752..552241TCONS_00072890-exon-scaffold_86-1491911889:550752..552241Clytia hemisphaericaexon
TCONS_00072890-exon-scaffold_86-1510915933:550752..552241TCONS_00072890-exon-scaffold_86-1510915933:550752..552241Clytia hemisphaericaexon
TCONS_00072890-exon-scaffold_86-1575043694:550752..552241TCONS_00072890-exon-scaffold_86-1575043694:550752..552241Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:542148..552241 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.238575 0 0 0.187398 0.000398941 0.00025391 5.43929e-06 0.0140926 0.0112388 0.0711578 9.43312e-06 1.68877e-05 1.87539 0.0822185 0.178454 0.00133686 1.82258 0.354184 0.451477 2.84887 0.330647 0.921653 0.184186 0.0683994 0.010874 0
Blast
BLAST of TCONS_00072890 vs. Swiss-Prot (Human)
Match: PCKGC (Phosphoenolpyruvate carboxykinase, cytosolic [GTP] OS=Homo sapiens GN=PCK1 PE=1 SV=3)

HSP 1 Score: 816.224 bits (2107), Expect = 0.000e+0
Identity = 377/616 (61.20%), Postives = 474/616 (76.95%), Query Frame = 1
Query:  379 LSKNISVTHGNFETLPNKVKDFVVQKSELCQPDFLHICDGSEDEAQSLADLLVKNGTARKLEKMDNCYAVRTNPADVARVESKTLICTENKHDTVPHTKDGVRCSVGQWTEPKEMKEKLQGLFQGCMKGRTMYVIPFSMGPVGSPLSKIGIELTDSPYVSMSMGVMTRMGSKVLNSLGDGDFVKCSHSVGQPLPLEKPDPYNWPCNPEKTVITHFPADREIISFGSGYGGNSLLGKKCFALRIASAVARDEGWLAEHMLILGLTNPQGEKKYVAAAFPSACGKTNLAMLTPTLPGWKAECVGDDIAWMKFDEEGVLRAINPEYGFFGVAPGTSMETNPQALIACQKNTVFTNCATTDDGEIYWEGLEKEVNLEGRSVTDWLGKPWTKESGTKAAHPNSRFCTPAGNCKVIDPLWEDPKGVPISAILFGGRRPEGVPLIYEAFNWQHGVFVASALCSETTAAAEHKGKAIMRDPFAMRPFFGYNAGHYFKHWLSLEDDKKHQLPKIFHVNWFRKGEDGKFLWPGFGENCRVLKWVFDRVDGKHGVQKSTVGYLPENDALDLNGLDEDLNMKELMSVPTDYWMEQLDDIEKYYNQQFGEDIPQQLWDEVHSFRERLTK 2226
            L+ +  V  G+ ++LP  V++F+   +ELCQPD +HICDGSE+E   L   + + G  R+L+K DNC+   T+P DVAR+ESKT+I T+ + DTVP  K G+   +G+W   ++ ++     F GCMKGRTMYVIPFSMGP+GSPLSKIGIELTDSPYV  SM +MTRMG+ VL ++GDG+FVKC HSVG PLPL+KP   NWPCNPE T+I H P  REIISFGSGYGGNSLLGKKCFALR+AS +A++EGWLAEHMLILG+TNP+GEKKY+AAAFPSACGKTNLAM+ P+LPGWK ECVGDDIAWMKFD +G LRAINPE GFFGVAPGTS++TNP A+   QKNT+FTN A T DG +YWEG+++ +   G ++T W  K W+ E G   AHPNSRFCTPA  C +ID  WE P+GVPI  I+FGGRRP GVPL+YEA +WQHGVFV +A+ SE TAAAEHKGK IM DPFAMRPFFGYN G Y  HWLS+      +LPKIFHVNWFRK ++GKFLWPGFGEN RVL+W+F+R+DGK   + + +GY+P+ DAL+L GL   +NM EL S+  ++W ++++DIEKY   Q   D+P ++  E+ + ++R+++
Sbjct:    9 LNLSAKVVQGSLDSLPQAVREFLENNAELCQPDHIHICDGSEEENGRLLGQMEEEGILRRLKKYDNCWLALTDPRDVARIESKTVIVTQEQRDTVPIPKTGL-SQLGRWMSEEDFEKAFNARFPGCMKGRTMYVIPFSMGPLGSPLSKIGIELTDSPYVVASMRIMTRMGTPVLEAVGDGEFVKCLHSVGCPLPLQKPLVNNWPCNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALRMASRLAKEEGWLAEHMLILGITNPEGEKKYLAAAFPSACGKTNLAMMNPSLPGWKVECVGDDIAWMKFDAQGHLRAINPENGFFGVAPGTSVKTNPNAIKTIQKNTIFTNVAETSDGGVYWEGIDEPL-ASGVTITSWKNKEWSSEDGEPCAHPNSRFCTPASQCPIIDAAWESPEGVPIEGIIFGGRRPAGVPLVYEALSWQHGVFVGAAMRSEATAAAEHKGKIIMHDPFAMRPFFGYNFGKYLAHWLSMAQHPAAKLPKIFHVNWFRKDKEGKFLWPGFGENSRVLEWMFNRIDGKASTKLTPIGYIPKEDALNLKGLGH-INMMELFSISKEFWEKEVEDIEKYLEDQVNADLPCEIEREILALKQRISQ 621          
The following BLAST results are available for this feature:
BLAST of TCONS_00072890 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PCKGC0.000e+061.20Phosphoenolpyruvate carboxykinase, cytosolic [GTP]... [more]
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