TCONS_00072887 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072887
Unique NameTCONS_00072887
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3204

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072887 ID=TCONS_00072887|Name=TCONS_00072887|organism=Clytia hemisphaerica|type=transcript|length=3204bp
catttttgaagtttGTTCAAACTTGTCgtttttaaacgaagaaatTTAAC
AAGCACCacaaaaaagactttgaaatcaAGAAAACTAAAgTTCAGCCTTC
ACTCAACCCACTTATTTCGAGCTCTGCAATTACGACAAATGGCATcctta
tcaaaaaatatttctgtcACACATGGCAATTTTGAAACACTCCCAAATAA
AGTAAAGGATTTTGTCgtacaaaaaagtgaattatgtCAGCCAGATTTTC
TCCACATTTGTGATGGCTCAGAAGATGAGGCACAAAGCTTAGCTGATCTT
CTTGTAAAAAATGGAACTgcaagaaaattggaaaaaatggataATTGcTA
TGCTGTCCGTACTAATCCAGCTGATGTTGCACGTGTTGAATCAAAAACGT
TGATCTGTACTGAAAATAAACATGATACTGTCCCCCACACCAAAGATGGA
GTTAGATGTTCAGTTGGACAATGGACTGAGCCTAAAGAAATGAAGGAAAA
GCTCCAAGGATTATTCCAAGGATGCATGAAGGGAAGAACCATGTatgtta
ttccattttcaatgGGACCTGTTGGCTCTCCTTTGTCCAAAATTGGTATT
GAACTTACTGATTCTCCATATGTCTCAATGTCTATGGGTGTTATGACTAG
AATGGGATCAAAAGTATTGAATTCTCTGGGTGATGGTGATTTTGTCAAAT
GTTCTCACTCTGTTGGACAACCTTTACCTCTTGAAAAACCAGACCCATAT
AACTGGCCATGTAATCCAGAAAAGACTGTTATCACACATTTCCCAGCTGA
CAGAGAAATCATCTCCTTTGGATCTGGTTATGGTGGAAACTCACTTCttg
gaaagaaatgttttgcTTTGAGAATCGCATCTGCTGTTGCTAGAGATGAA
GGATGGTTAGCTGAACACATGCTGATCCTTGGATTGACTAACCCACAAGG
TGAAAAGAAATATGTTGCTGCTGCATTTCCAAGTGCTTGTGGAAAGACAA
ACTTAGCTATGTTAACCCCAACTTTACCAGGATGGAAAGCAGAATGTGTC
GGTGATGATATTGCATGGATGAAATTTGACGAGGAAGGTGTCTTGAGAGC
TATTAATCCAGAATATGGATTCTTTGGTGTTGCCCCCGGAACCTCAATGG
AAACCAACCCACAAGCATTAATTGCTTGTCAGAAGAACACTGTCTTTACT
AACTGCGCTACTACTGATGATGGTGAAATCTACTGGGAAGGTCTTGAAAA
GGAAGTCAACCTTGAAGGTCGTTCAGTCACTGACTGGTTGGGTAAACCAT
GGACTAAAGAATCTGGAACAAAAGCTGCTCATCCAAACTCTCGATTCTGT
ACGCCAGCTGGAAATTGCAAAGTTATCGATCCACTTTGGGAAGATCCTAA
AGGTGTCCCAATCTCTGCTATCTTGTTTGGTGGACGCCGACCAGAAGGTG
TGCCATTGATCTACGAAGCATTTAATTGGCAACATGGTGTGTTTGTTGCA
AGTGCTCTTTGCTCTGAAACGACGGCTGCTGCAGAACACAAAGGCAAAGC
TATAATGAGAGATCCCTTCGCCATGAGACCATTCTTTGGATATAACGCTG
GACATTACTTTAAACACTGGTTGAGTCTTGAAGATGATAAGAAACATCAA
TTGCCTAAAATTTTCCATGTCAACTGGTTCAGAAAAGGAGAAGACGGCAA
ATTCCTATGGCCTGGATTCGGTGAAAACTGTCGTGTCTTGAAATGGGTTT
TCGATCGCGTCGACGGCAAACACGGAGTCCAAAAATCCACCGTCGGATAT
TTACCTGAAAATGACGCATTAGACTTAAATGGACTAGATGAAGATTTAAA
TATGAAAGAACTAATGTCTGTTCCCACTGACTATTGGATGGAACAACTAG
ATGATATtgagaaatattataatcaacAATTTGGTGAAGATATTCCACAA
CAATTATGGGATGAAGTACATTCTTTCAGGGAACGATTGACAAAATCTCC
TACCGCCGCTTAAATGTGTTATTTATTGGAAGATGATGATTGTTGTTGAT
GCTTTTTGTCCTTTTTAACcttatatttagaatttttcctACACCatttc
tgaaaaatgaaaaacaatttttatgatGTTGTAGTCACAATCGGACTTGT
cattttcttcttattttcCTCATTTTACTGAGTTGGAATTGTCAATAAGT
GTaaaatgattttacttttttatttagtgatcGTAAAACAAAATTACACT
AAGAAAGCTAAGCTATGCACGTTGCTAATATACAATANtttactttttta
tttagtgatcGTAAAACAAAATTACACTAAGAAAGCTAAGCTATACACGT
TGCTAATATACAATAGTATAGTAAAGAggacttttttagttttagggact
tgatttctttttaaagtgtttgttcgttttctttttgttaACAGAATTTT
TTAATTGTTCAGCTGTatttaaaaatgctattttatgtctttgttttatt
ttgttatatctttatttttcagctttcttttggtACAATATACAGTCTTT
TTTTTCGTTTATCTGTCACGGTATTATTTTTGTTTGGCTAGAGAGATATT
TATaagaaatattaaaatttaaatattatTATCATGTGATAGtttaacat
ttttgtaaacttcAAGTTTATAAGGGAGAATAATTTTTTGTTACTTTGTA
TCATCTTATTTTAATGCTAGagtttatatttgttttgtaATATTGACGTT
TTTGAAGTCAGTAAAATACAacgttttcgaaaaaaaatcaacattgcTGC
ACGGTTTTATACCCCCTAATGAATCGTTCAATTTTTTATTAATATTTGCA
GAATCaagatttcaatgtttttttccttttactCTTTTCATCAGACGAAT
Tgataagaaattaaatttttgcgtttaagagagaaaaaaaacaaatagcc
AGAAAAAACATAGTCAGCGAAGATTTTTACCTGATTTCAATATCTCGCCG
CTGGCTCACCATAGGATAACGATGGATGGCCTCACAATATTATTTcaaac
taaagtctgttccaaaaatgACAGTCAGCACATTTTGATACATTGTCCTT
GAAGGTGTAGAGATAAATTAATATACTGCTAGAAATATCGTTTTGAGTGG
ATTTCCacctttttaaaactttggaaCTTccctgatttcaaatatgtatt
cgga
Run BLAST on NCBI

transcript from alignment at scaffold_86:541421..552241+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072887 ID=TCONS_00072887|Name=TCONS_00072887|organism=Clytia hemisphaerica|type=transcript|length=10821bp|location=Sequence derived from alignment at scaffold_86:541421..552241+ (Clytia hemisphaerica)
catttttgaagtttGTTCAAACTTGTCgtttttaaacgaagaaatTTAAC
AAGCACCacaaaaaagactttgaaatcaAGAAAACTAAAGTAAGTCCATC
ATCTACTTTACGATTTGAGTACtaattaaagggataatcagatggtttga
gatatttggcatgtgggatCCTTCTATTGCCCTGAGCAAAACCTCAATAT
TTTCAAGTCCAGATATTTAAATTACAAGCTTTTGACTTTTagtaagaaaa
caatagaatttcaacgtaagaaccgtgtgagaacccattttcagaaattt
taaattttgatatctcgACTTTAGAATATAGTTAGACAAAAATACTTggt
gattttattcaaaatcaCATAGGGTTTTAAAggcaaaaaatctcaaacca
tctgattatccctttaaaatttttattctaatGGGTAAGTTGTTTAATAT
GTGTGCAACTGTACTTTCAGGACAGTTTGTTCTTTACCTTGTTAAATGTG
AGTCAATTAGAAATTAGAAAGTTGTGATAAAATACCTAGTATTAAAAAGA
CTTTGGTCCTTATttgcaaaaactattttttaagtaaaaagtaaaacttg
acaagcttttaatttttaatcatttaGATTTAATAAGATCAGTACATCCG
AAAGAAGCTAGTCTTTGAAACTAGTTTAACTTACTTTCTAAAAACTGTCA
TAAGATGAAATTAcacaatttttagaaaatatttatacAACACATGATAT
TTATAATCTTCCATTATTTGAGAGggattttaaatttcgaaactttGACC
TGTCAGACATGTAAGCATTGCTCAAGAGAGgaatttaaagtcctttgata
CACGTGGTTTAGAGATTTTATcctaaaatttgaaagaaaaacatatcTGA
AAGATAaaggttttgagaaaaattatagcattccATCGTGACGTCATGAC
TTTTATAAAAGGCAAGCTAGAAACAGAGCTGAGATACAGTTAAATAACAG
TCAACCGTTTTTAGCAACCTTGCACAAGAACCTAAACAACTTTAAAGGTA
AGATTTGATGTAATTATTTTGCTAGATGGTACGTATAAGTAATAGTGAGA
TATCAAAGTTTAAGTAGATAAAGAAAGAAAGTTGTGTAATTTTCGTAAGT
TATCTAGAGCTAAAAACAAGTCTTCTtgggaaaaattaaatactaTTGGA
TAAAAAATACAACGcaaaaatttttccattttatcATGCTTCAGTGGGCA
AAACCTAAAAtaataagaaatacttcttcttTTTATGGAACCCCAAAAAT
TCCAGGAAAATTGCACGAATTCCAAAATCAGTATTCAAAGCAAAGGTTTC
ATTGTCACATAGAAGCCCAGTTTCGATGAACTTTGCAGAATTCTACCAGC
ATCTAGCACAGTAATCCATCTTAAACTGAAAATCTTGTGTGTACTGCGCT
TTAGCTTGTTCCAGCTTACCTTTTGAAAAGTTCTTTGAAAAAGATAACta
gatatttcaaattttcaaatatgcTTAGGGAAGAGGAAAATTTGAGGAAA
TTCAAAGGTACACAATTTTTCCTggaaaagttaaaaaacataCAGAAAAT
TCTTCTAGAAAAATAGCAGGATAGCCGTATTTATCATTATCATTCCCTGA
TTCAACTTAATCCCTTCAGAAAACTGTCAACAAAAATATTGTATGCATGG
GTTCTCTGAAAAGATTTCTTTATAACTTCAGCCATAAAAAATCTACAGGT
TGGCATGATCCCATGAAATTTATTCTTGTCtctctatttttctttgccTT
GCTTTTGCTTTGCCTTTGCCTGCTTATTATTAATTGCATTTTTTAATAAT
TCTAGATCAATTAgataatttaaaaaagtataACTTTCTGCCTCCTGACA
AATTGCAGGGTACAAATTCCTGTAAATTCCAATTTTCACACATTGAGCAA
GACTCAGACACACTGGGTCCAGAAAGCTAAGCTTTATAAATAGGAAAATG
AGGGACACAAAAAGGTActtttgattatattttgattCTGAAGTCTTTCC
TATAACTGGATCATGTTAAAACTATGATAAACCATTGAtgcttttcagaa
tttttcatgtaaattgaaaattttactttgaaaaattcaggcaaactttc
aactaaaacCAAAAGTGTCATTTAGAAATTGAATCATATTCAGAATGGGC
AAATTGGGCATGAAAAATCCAGgcaaactttcaactaaaacCAAAAGTGT
CATTTAGAAATTGAATCATATTCAGAATGGGCTTTTGTAGTGGCTTGAAG
TGGCTttagttttcaaaatatatattgTTGAGTATGTGACTTTACTATAT
GATTAATGAGATTGGATATTTTTGCTGGAGGTTAacttgtttttttaaat
caaaaaatttccatggaaaatcttatttttagtttgcttttacttacttt
tgatacttttgatggGTTTTTAGAGTCTCTCAATCATTCCATTTGGATTT
TAGATGCCCAAAAAtacatttcattattttccctTTAGATTTAGGACATA
ATGTCACTGGAGATATTATGCAAAAAGAACTGATTCAAAAGCTTATTTAC
CATGAAATCAAAATCTTGTCCAAATCAAGAATATATTTTACAGACAATCG
CTAGACATTTGTGACACTTTGTAAACTTGTTTGAATGTGCACTTTTAAAC
TCGGTGTGCAGACGCTTAGTTATAAGTTATATGAAACACATTAAGATATT
GATCTACTAGGCTATCTACTATGGAATTTGGAgtaccaaattttcaaaaa
gattttgataaTTCAATCACTTTTTTAACAACCCTTCGAAGACTCAATAA
CCGTAcatactttgattgttattaaTTAATTTCGATAAACTCAACACAAC
CAATTGATTACTTCTATAACTATTGATtacttaaagtctgtctcaatata
atttgacaaaaaaggctataacttttgatagaattcaaatTAGATAgcag
ttttgtgcttgttgagaagacaaacaggagtggaacattatcataaagaa
aaaattcaaaaaagattgaaaaacaaagatggaaatgaagaagaagaaaa
tcaacttcttcaataattgtgcttataattatcattttcacacgagtgat
tcTTTGACCTTAGAGCATCATTAATGTGAAaaacaatcttcaaaaaaatt
tattttatccaaagatatagtccaaagtttgtcactgattgacttcaaaa
accatcaaaaacaaacaaaaaagagcccttttttaagtcaaccagcgaca
aagttttaagctgtattttttgactgaagcaatattttgtgattttattt
CGTATATCTATGATGTtctaaagattaaagaatttttaatatgaaaatga
aaatcatagcattattcaacaagaagttgattttctactatcttattttt
catctttgtttttcaatttttttaatttttttcttttttgacagtttACA
GTAGTGGAAGTACCTCGATTTTAAGCATGTTCAaaaagttcacaataacg
actttctttttataacggAAACCAAACGAGTAAGAAAAAGTCAAGCAACT
AAATCTCAGCGCTCCGTGGTTGTGACGtagtttacaaaattgttaagata
taatgacatactttttaacaacttttttctatgtcatttttgaagcctct
tcGTAGGAGAATTTTATtacacttcatggcagattaaaaagacgattaga
aaacgaaagcttcttcatttttcatttttgcatttaaggggaagaatgaa
attttcagaagattatttatttgatatgaggattcccatttccgtaaaAT
TGCAATTCCTCATGGTTGTGAAATGgtggctatgggtaattcctttgttc
ttttgccaTTTTCATTTGTTCTATGTGACGTAAAGATGCTTCACAAATCA
AAGTATTTCCACTAACTGTTTGATAATATTCAACTCtgaaatatcttttt
aatgagCACAAAACCAATATCTATCAGAAGTTATAGCCTTGGTTGTCTCT
ATTGCAAATTATGTTGAGACAAACTTTagataaccaattgattacATATA
TAGTATAGATgtctttaagaaaaaccaaaaacattgacctTAAAACCAAA
GCACAATAAGAAGCAGCAGCAGCCATAAGAATAACCTTCAGTAATTACCC
CACCATTTTGTGTGGGTTTCCCGAAGTAACTCATATCGTGCATTCTGATT
GATCGGAGAAAAACAAAGTGGTTTTCGCGCGTGATTTTTATTAAAGAAGA
ATATGTTGAAATTAGAAagagatgtcgacattagaccaacttacagtaat
taattagttattcaaaagacgaAAGACCGTCATGTTCCTTTATTTATATG
CTAATGACAAATGAACAGCATGGCAGTGCTTGGAACCAAAACTGTTGATA
AGAATCTGCCAAAccaaacaatcaaaacaaaacacccCCACCACCCACAG
TCcactttgaaaacaaaatttaaaaattgaatagaaaaccTTTTTCATCT
TTGTGCCAGTAAGtccagtgaaaaaaaattttgtttctaaaaatgAACTC
ACAGCTCTCTAAAAATATTATctgttaaaagtaaaaaaaggaCGGTGTGT
AGTTATAGTTGGTAGAGTTATTTCCTCTCTTCTCTAACTAATAATTCTCA
CTGAACTAAATTTCCTTACATTTAGTGGTGTTGTTTGCTGTTCATTCATT
ACACATCCCTTACACTATATAAAGAggtttttaaaatctgaaacattaaa
aattttgttaagattttgactttttttgatgtTGATGTCGCTATCAAAGA
TGGCGGGTTTCCCGCCagaaattgtaaacaaaaactaGCCTGTGAAACCT
ATTCCGGTCCTTGAAATATCACAGGAATAGAATTTTGGTTCggtaaaata
aatcaaaagaatttgataatGAGATTTCCTGATTTCATGAATGTGCAAAG
TTGCCCAGGGAATTTGATAAGCACGTTGCACTCAGTGGCTGGAGAAGGCG
ACACAAAAATCactttaaactaaaattgctcGAGGTTTTAAAGTACAACA
AAAATGGCACCATATGCTAAGCTACTCACAAGGTATACAATTTTTGTTTA
CACCAAATTTCTcggaatttttttgcaaaatgaagtcattgcaaagcaat
ttaaaaaaataaattttactcGACTGTTCGATTCGATGAATTTGAGGCTT
TTGTAGTTTTTATTCCTTGACTCTCATGGACATAGATCAGCATGATTTGT
TTATAGAACAAGGTATATTGTTTTGTTTGCAGTATAGTtgttaaaaaagt
tttgtttgttttggctTATGACATTGTTTTTATTACAAACTTTCGacctt
ttgttcttatttattttGTGTTGATGGGACTTTTTATAGCAgtatttgac
tgaaatttgaaaCCTTTTATAAAGCACTCAATGCCTTTTTACTTCCGCGT
CTATAACAAGTTTTTAGATAGATTTATCTATTTTTGTGAGTTTTGGACGC
ATTCAACCGAAAATATAgaaacatttttagatttcttacTCCTAAACTAA
ATTATTCATGATCAATACAAGAGTTTCCAATCCCTATACAAATGACCTCT
TTTCAATCTCTAAGCTATGATTCCTATAATATTTCTTGACTTCATTCATC
CCGTTTAAGGATTTGAATATGTCTTTTAAatacaaaatttagaaatgtaA
AAATGGCTTTACAATTAATGATAGGAACTTATCAGTTAGATTTAAATAGT
TTTTAAAGATTAATGTCTTgcattaagaagattaaaagaCATTTAAGAGT
TTCTATTGCTCAAAACAGTTAGACTCACACCTTAATTTAAACCCTATTGT
CAAGACACAAAAATTGAAATGCTAGAATTCTAAGTACCTTATAACCAACC
TATatgtaaaatagaaaatgaaccACTGAACTGACTTggatattttttaa
ttcaagggTTTATTTTATAGATAAACTTGGCACTACATTAGACATTCCCA
TACTTTCCCATTAATTCAAAAGACTCCTCAAAATCAAAAGCgtgaaaatg
ttatatttttgtttcaggTTCAGCCTTCACTCAACCCACTTATTTCGAGC
TCTGCAATTACGACAAATGGCATccttatcaaaaaatatttctgtcACAC
ATGGCAATTTTGAAACACTCCCAAATAAAGTAAAGGATTTTGTCgtacaa
aaaagtgaattatgtCAGCCAGATTTTCTCCACATTTGTGATGGCTCAGA
AGATGAGGCACAAAGCTTAGCTGATCTTCTTGTAAAAAATGGAACTgcaa
gaaaattggaaaaaatggataATTGGTAAGAATGCACTTATGATTACTAT
TAACAAAGAATACCTCCACTCACTTTTAACTaaaaaccattttgattttt
ttaatcaaaattgtcatGATAAAGATTgaatattctttatttttagcTAT
GCTGTCCGTACTAATCCAGCTGATGTTGCACGTGTTGAATCAAAAACGTT
GATCTGTACTGAAAATAAACATGATACTGTCCCCCACACCAAAGATGGAG
TTAGATGTTCAGTTGGACAATGGACTGAGCCTAAAGAAATGAAGGAAAAG
CTCCAAGGATTATTCCAAGGATGCATGAAGGGTAAAGATTTGAGATTTGA
AATTATACTTAATACATTGCTCTGATTTGTGAGTGTTTTTTACATGGTTT
TCACATGGTTATGTTTCatctgattttttgtttttattcatgATCTCTTT
TGTATCTTATAGGAAGAACCATGTatgttattccattttcaatgGGACCT
GTTGGCTCTCCTTTGTCCAAAATTGGTATTGAACTTACTGATTCTCCATA
TGTCTCAATGTCTATGGGTGTTATGACTAGAATGGGATCAAAAGTATTGA
ATTCTCTGGGTGATGGTGATTTTGTCAAATGTTCTCACTCTGTTGGACAA
CCTTTACCTCTTGAAAAACCAGACCCATATAACTGGCCATGTAATCCAGA
AAAGACTGTTATCACACATTTCCCAGCTGACAGAGAAATCATCTCCTTTG
GATCTGGTTATGGTGGAAACTCACTTCttggaaagaaatgttttgcTTTG
AGAATCGCATCTGCTGTTGCTAGAGATGAAGGATGGTTAGCTGAACACAT
GCTGGTATGTTCTCATTCCCCTTGAATTCGCAAAGTTAATTTATTCATGC
TATCAAGTGCTATCTATGAAATCTGAAAAGTAACTAATTGGTTTTCATTG
TCACCTCTTTTAGATCCTTGGATTGACTAACCCACAAGGTGAAAAGAAAT
ATGTTGCTGCTGCATTTCCAAGTGCTTGTGGAAAGACAAACTTAGCTATG
TTAACCCCAACTTTACCAGGATGGAAAGCAGAATGTGTCGGTGATGATAT
TGCATGGATGAAATTTGACGAGGAAGGTGTCTTGAGAGCTATTAATCCAG
AATATGGATTCTTTGGTGTTGCCCCCGGAACCTCAATGGAAACCAACCCA
CAAGCATTAATTGCTTGTCAGAAGAACACTGTCTTTACTAACTGCGCTAC
TACTGATGATGGTGAAATCTACTGGGAAGGTACAAcaagatcaaatttaa
tttctcaGACTTCTTCTTGCCCTTTTTTAATTGCTGGAAATGatcatcaa
tttttaaaaatgactGAAGTTCTTAAGCTACACTCTATTAATTTCGCTAT
CAATGCGCTAATCTGTATTCATGATTCATGAATATTAATTCGattaattt
gatgaattttttctcCAGGTCTTGAAAAGGAAGTCAACCTTGAAGGTCGT
TCAGTCACTGACTGGTTGGGTAAACCATGGACTAAAGAATCTGGAACAAA
AGCTGCTCATCCAAACTCTCGATTCTGTACGCCAGCTGGAAATTGCAAAG
TTATCGATCCACTTTGGGAAGATCCTAAAGGTGTCCCAATCTCTGCTATT
TTGTTTGGTGGACGCCGACCAGAAGGTGTGCCATTGATCTACGAAGCATT
TAATTGGCAACATGGTGTGTTTGTTGCAAGTGCTCTTTGCTCTGAAACGA
CGGCTGCTGCAGAACACAAAGGCAAAGCTATAATGAGAGATCCCTTCGCC
ATGAGACCATTCTTTGGATATAACGCTGGACATTACTTTAAACACTGGCT
GAGTCTTGAAGATGATAAGAAACATCAATTGCCTAAAATTTTCCATGTCA
ACTGGTTCAGGAAAGGAGAAGACGGCAAATTCCTATGGCCTGGTAAGTCC
TTGTTTACATTCTCATGGCTCTCTTTCATTTCATATAGACTTTACAAATT
AANACCAACCCACAAGCATTAATTGCTTGTCAGAAGAACACTGTCTTTAC
TAACTGCGCTACTACTGATGATGGTGAAATCTACTGGGAAGGTACGAcaa
gatcaaatttaatttctcaGACTTCTTCTTGCCCTTTTTTAATTGCTGGA
AATGatcatcaatttttaaaaatgactGAAGTTCTTAAGCTACTCTATTC
ATTTCGCTATCAATGCGCTAATCTGTATTCATGATTCATGAATATTAATT
CGattaatttgatgaattttttctcCAGGTCTTGAAAAGGAAGTCAACCT
TGAAGGTCGTTCAGTCACTGACTGGTTGGGTAAACCATGGACTAAAGAAT
CTGGAACAAAAGCTGCTCATCCAAACTCTCGATTCTGTACGCCAGCTGGA
AATTGCAAAGTTATCGATCCACTTTGGGAAGATCCTAAAGGTGTCCCAAT
CTCTGCTATCTTGTTTGGTGGACGCCGACCAGAAGGTGTGCCATTGATCT
ACGAAGCATTTAATTGGCAACATGGTGTGTTTGTTGCAAGTGCTCTTTGC
TCTGAAACGACGGCTGCTGCAGAACACAAAGGCAAAGCTATAATGAGAGA
TCCCTTCGCCATGAGACCATTCTTTGGATATAACGCTGGACATTACTTTA
AACACTGGTTGAGTCTTGAAGATGATAAGAAACATCAATTGCCTAAAATT
TTCCATGTCAACTGGTTCAGAAAAGGAGAAGACGGCAAATTCCTATGGCC
TGGTAAGTCCTTGTTTACATTCTCATGGCTCTCTTTCATTTCATATAgac
ttttcaaattatttgtGAACCTTTCCTCttcattttataaaatttccTTG
AATACCAGTTTGAAAGACTAAAATCTCTCATATTAAAAATGGCATGCAAT
CTCAAAGGAGGGATTATAATAGTTTTCTTAGCTGTAGTTTCCAAACAACC
TATAACAATTAcaataattttcatatttcagGATTCGGTGAAAACTGTCG
TGTCTTGAAATGGGTTTTCGATCGCGTCGACGGCAAACACGGAGTCCAAA
AATCCACCGTCGGATATTTACCTGAAAATGACGCATTAGACTTAAATGGA
CTAGATGAAGATTTAAATATGAAAGAACTAATGTCTGTTCCCACTGACTA
TTGGATGGAACAACTAGATGATATtgagaaatattataatcaacAATTTG
GTGAAGATATTCCACAACAATTATGGGATGAAGTACATTCTTTCAGGGAA
CGATTGACAAAATCTCCTACCGCCGCTTAAATGTGTTATTTATTGGAAGA
TGATGATTGTTGTTGATGCTTTTTGTCCTTTTTAACcttatatttagaat
ttttcctACACCatttctgaaaaatgaaaaacaatttttatgatGTTGTA
GTCACAATCGGACTTGTcattttcttcttattttcCTCATTTTACTGAGT
TGGAATTGTCAATAAGTGTaaaatgattttacttttttatttagtgatcG
TAAAACAAAATTACACTAAGAAAGCTAAGCTATGCACGTTGCTAATATAC
AATANtttacttttttatttagtgatcGTAAAACAAAATTACACTAAGAA
AGCTAAGCTATACACGTTGCTAATATACAATAGTATAGTAAAGAggactt
ttttagttttagggacttgatttctttttaaagtgtttgttcgttttctt
tttgttaACAGAATTTTTTAATTGTTCAGCTGTatttaaaaatgctattt
tatgtctttgttttattttgttatatctttatttttcagctttcttttgg
tACAATATACAGTCTTTTTTTTCGTTTATCTGTCACGGTATTATTTTTGT
TTGGCTAGAGAGATATTTATaagaaatattaaaatttaaatattatTATC
ATGTGATAGtttaacatttttgtaaacttcAAGTTTATAAGGGAGAATAA
TTTTTTGTTACTTTGTATCATCTTATTTTAATGCTAGagtttatatttgt
tttgtaATATTGACGTTTTTGAAGTCAGTAAAATACAacgttttcgaaaa
aaaatcaacattgcTGCACGGTTTTATACCCCCTAATGAATCGTTCAATT
TTTTATTAATATTTGCAGAATCaagatttcaatgtttttttccttttact
CTTTTCATCAGACGAATTgataagaaattaaatttttgcgtttaagagag
aaaaaaaacaaatagccAGAAAAAACATAGTCAGCGAAGATTTTTACCTG
ATTTCAATATCTCGCCGCTGGCTCACCATAGGATAACGATGGATGGCCTC
ACAATATTATTTcaaactaaagtctgttccaaaaatgACAGTCAGCACAT
TTTGATACATTGTCCTTGAAGGTGTAGAGATAAATTAATATACTGCTAGA
AATATCGTTTTGAGTGGATTTCCacctttttaaaactttggaaCTTccct
gatttcaaatatgtattcgga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045230XLOC_045230Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072887-exon-scaffold_86-1491911889:541421..541509TCONS_00072887-exon-scaffold_86-1491911889:541421..541509Clytia hemisphaericaexon
TCONS_00072887-exon-scaffold_86-1510915933:541421..541509TCONS_00072887-exon-scaffold_86-1510915933:541421..541509Clytia hemisphaericaexon
TCONS_00072887-exon-scaffold_86-1575043694:541421..541509TCONS_00072887-exon-scaffold_86-1575043694:541421..541509Clytia hemisphaericaexon
TCONS_00072887-exon-scaffold_86-1491911889:547538..547795TCONS_00072887-exon-scaffold_86-1491911889:547538..547795Clytia hemisphaericaexon
TCONS_00072887-exon-scaffold_86-1510915933:547538..547795TCONS_00072887-exon-scaffold_86-1510915933:547538..547795Clytia hemisphaericaexon
TCONS_00072887-exon-scaffold_86-1575043694:547538..547795TCONS_00072887-exon-scaffold_86-1575043694:547538..547795Clytia hemisphaericaexon
TCONS_00072887-exon-scaffold_86-1491911889:547917..548101TCONS_00072887-exon-scaffold_86-1491911889:547917..548101Clytia hemisphaericaexon
TCONS_00072887-exon-scaffold_86-1510915933:547917..548101TCONS_00072887-exon-scaffold_86-1510915933:547917..548101Clytia hemisphaericaexon
TCONS_00072887-exon-scaffold_86-1575043694:547917..548101TCONS_00072887-exon-scaffold_86-1575043694:547917..548101Clytia hemisphaericaexon
TCONS_00072887-exon-scaffold_86-1491911889:548233..548624TCONS_00072887-exon-scaffold_86-1491911889:548233..548624Clytia hemisphaericaexon
TCONS_00072887-exon-scaffold_86-1510915933:548233..548624TCONS_00072887-exon-scaffold_86-1510915933:548233..548624Clytia hemisphaericaexon
TCONS_00072887-exon-scaffold_86-1575043694:548233..548624TCONS_00072887-exon-scaffold_86-1575043694:548233..548624Clytia hemisphaericaexon
TCONS_00072887-exon-scaffold_86-1491911889:548734..549049TCONS_00072887-exon-scaffold_86-1491911889:548734..549049Clytia hemisphaericaexon
TCONS_00072887-exon-scaffold_86-1510915933:548734..549049TCONS_00072887-exon-scaffold_86-1510915933:548734..549049Clytia hemisphaericaexon
TCONS_00072887-exon-scaffold_86-1575043694:548734..549049TCONS_00072887-exon-scaffold_86-1575043694:548734..549049Clytia hemisphaericaexon
TCONS_00072887-exon-scaffold_86-1491911889:550049..550522TCONS_00072887-exon-scaffold_86-1491911889:550049..550522Clytia hemisphaericaexon
TCONS_00072887-exon-scaffold_86-1510915933:550049..550522TCONS_00072887-exon-scaffold_86-1510915933:550049..550522Clytia hemisphaericaexon
TCONS_00072887-exon-scaffold_86-1575043694:550049..550522TCONS_00072887-exon-scaffold_86-1575043694:550049..550522Clytia hemisphaericaexon
TCONS_00072887-exon-scaffold_86-1491911889:550752..552241TCONS_00072887-exon-scaffold_86-1491911889:550752..552241Clytia hemisphaericaexon
TCONS_00072887-exon-scaffold_86-1510915933:550752..552241TCONS_00072887-exon-scaffold_86-1510915933:550752..552241Clytia hemisphaericaexon
TCONS_00072887-exon-scaffold_86-1575043694:550752..552241TCONS_00072887-exon-scaffold_86-1575043694:550752..552241Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:541421..552241 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.000301351	0.00984525	4.04578e-05	0.1986	2.99074e-06	2.26647e-09	4.64918e-08	0	0	0	0	0	0	0	0	0	0	0	0	1.45113e-08	0	0
Blast
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BLAST of TCONS_00072887 vs. Swiss-Prot (Human)
Match: PCKGC (Phosphoenolpyruvate carboxykinase, cytosolic [GTP] OS=Homo sapiens GN=PCK1 PE=1 SV=3)

HSP 1 Score: 816.994 bits (2109), Expect = 0.000e+0
Identity = 377/616 (61.20%), Postives = 474/616 (76.95%), Query Frame = 1 
Query:  148 LSKNISVTHGNFETLPNKVKDFVVQKSELCQPDFLHICDGSEDEAQSLADLLVKNGTARKLEKMDNCYAVRTNPADVARVESKTLICTENKHDTVPHTKDGVRCSVGQWTEPKEMKEKLQGLFQGCMKGRTMYVIPFSMGPVGSPLSKIGIELTDSPYVSMSMGVMTRMGSKVLNSLGDGDFVKCSHSVGQPLPLEKPDPYNWPCNPEKTVITHFPADREIISFGSGYGGNSLLGKKCFALRIASAVARDEGWLAEHMLILGLTNPQGEKKYVAAAFPSACGKTNLAMLTPTLPGWKAECVGDDIAWMKFDEEGVLRAINPEYGFFGVAPGTSMETNPQALIACQKNTVFTNCATTDDGEIYWEGLEKEVNLEGRSVTDWLGKPWTKESGTKAAHPNSRFCTPAGNCKVIDPLWEDPKGVPISAILFGGRRPEGVPLIYEAFNWQHGVFVASALCSETTAAAEHKGKAIMRDPFAMRPFFGYNAGHYFKHWLSLEDDKKHQLPKIFHVNWFRKGEDGKFLWPGFGENCRVLKWVFDRVDGKHGVQKSTVGYLPENDALDLNGLDEDLNMKELMSVPTDYWMEQLDDIEKYYNQQFGEDIPQQLWDEVHSFRERLTK 1995
            L+ +  V  G+ ++LP  V++F+   +ELCQPD +HICDGSE+E   L   + + G  R+L+K DNC+   T+P DVAR+ESKT+I T+ + DTVP  K G+   +G+W   ++ ++     F GCMKGRTMYVIPFSMGP+GSPLSKIGIELTDSPYV  SM +MTRMG+ VL ++GDG+FVKC HSVG PLPL+KP   NWPCNPE T+I H P  REIISFGSGYGGNSLLGKKCFALR+AS +A++EGWLAEHMLILG+TNP+GEKKY+AAAFPSACGKTNLAM+ P+LPGWK ECVGDDIAWMKFD +G LRAINPE GFFGVAPGTS++TNP A+   QKNT+FTN A T DG +YWEG+++ +   G ++T W  K W+ E G   AHPNSRFCTPA  C +ID  WE P+GVPI  I+FGGRRP GVPL+YEA +WQHGVFV +A+ SE TAAAEHKGK IM DPFAMRPFFGYN G Y  HWLS+      +LPKIFHVNWFRK ++GKFLWPGFGEN RVL+W+F+R+DGK   + + +GY+P+ DAL+L GL   +NM EL S+  ++W ++++DIEKY   Q   D+P ++  E+ + ++R+++
Sbjct:    9 LNLSAKVVQGSLDSLPQAVREFLENNAELCQPDHIHICDGSEEENGRLLGQMEEEGILRRLKKYDNCWLALTDPRDVARIESKTVIVTQEQRDTVPIPKTGL-SQLGRWMSEEDFEKAFNARFPGCMKGRTMYVIPFSMGPLGSPLSKIGIELTDSPYVVASMRIMTRMGTPVLEAVGDGEFVKCLHSVGCPLPLQKPLVNNWPCNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALRMASRLAKEEGWLAEHMLILGITNPEGEKKYLAAAFPSACGKTNLAMMNPSLPGWKVECVGDDIAWMKFDAQGHLRAINPENGFFGVAPGTSVKTNPNAIKTIQKNTIFTNVAETSDGGVYWEGIDEPL-ASGVTITSWKNKEWSSEDGEPCAHPNSRFCTPASQCPIIDAAWESPEGVPIEGIIFGGRRPAGVPLVYEALSWQHGVFVGAAMRSEATAAAEHKGKIIMHDPFAMRPFFGYNFGKYLAHWLSMAQHPAAKLPKIFHVNWFRKDKEGKFLWPGFGENSRVLEWMFNRIDGKASTKLTPIGYIPKEDALNLKGLGH-INMMELFSISKEFWEKEVEDIEKYLEDQVNADLPCEIEREILALKQRISQ 621
The following BLAST results are available for this feature:
BLAST of TCONS_00072887 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PCKGC0.000e+061.20Phosphoenolpyruvate carboxykinase, cytosolic [GTP]... [more]
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