TCONS_00072887 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072887
Unique NameTCONS_00072887
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3204

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072887 ID=TCONS_00072887|Name=TCONS_00072887|organism=Clytia hemisphaerica|type=transcript|length=3204bp
catttttgaagtttGTTCAAACTTGTCgtttttaaacgaagaaatTTAAC
AAGCACCacaaaaaagactttgaaatcaAGAAAACTAAAgTTCAGCCTTC
ACTCAACCCACTTATTTCGAGCTCTGCAATTACGACAAATGGCATcctta
tcaaaaaatatttctgtcACACATGGCAATTTTGAAACACTCCCAAATAA
AGTAAAGGATTTTGTCgtacaaaaaagtgaattatgtCAGCCAGATTTTC
TCCACATTTGTGATGGCTCAGAAGATGAGGCACAAAGCTTAGCTGATCTT
CTTGTAAAAAATGGAACTgcaagaaaattggaaaaaatggataATTGcTA
TGCTGTCCGTACTAATCCAGCTGATGTTGCACGTGTTGAATCAAAAACGT
TGATCTGTACTGAAAATAAACATGATACTGTCCCCCACACCAAAGATGGA
GTTAGATGTTCAGTTGGACAATGGACTGAGCCTAAAGAAATGAAGGAAAA
GCTCCAAGGATTATTCCAAGGATGCATGAAGGGAAGAACCATGTatgtta
ttccattttcaatgGGACCTGTTGGCTCTCCTTTGTCCAAAATTGGTATT
GAACTTACTGATTCTCCATATGTCTCAATGTCTATGGGTGTTATGACTAG
AATGGGATCAAAAGTATTGAATTCTCTGGGTGATGGTGATTTTGTCAAAT
GTTCTCACTCTGTTGGACAACCTTTACCTCTTGAAAAACCAGACCCATAT
AACTGGCCATGTAATCCAGAAAAGACTGTTATCACACATTTCCCAGCTGA
CAGAGAAATCATCTCCTTTGGATCTGGTTATGGTGGAAACTCACTTCttg
gaaagaaatgttttgcTTTGAGAATCGCATCTGCTGTTGCTAGAGATGAA
GGATGGTTAGCTGAACACATGCTGATCCTTGGATTGACTAACCCACAAGG
TGAAAAGAAATATGTTGCTGCTGCATTTCCAAGTGCTTGTGGAAAGACAA
ACTTAGCTATGTTAACCCCAACTTTACCAGGATGGAAAGCAGAATGTGTC
GGTGATGATATTGCATGGATGAAATTTGACGAGGAAGGTGTCTTGAGAGC
TATTAATCCAGAATATGGATTCTTTGGTGTTGCCCCCGGAACCTCAATGG
AAACCAACCCACAAGCATTAATTGCTTGTCAGAAGAACACTGTCTTTACT
AACTGCGCTACTACTGATGATGGTGAAATCTACTGGGAAGGTCTTGAAAA
GGAAGTCAACCTTGAAGGTCGTTCAGTCACTGACTGGTTGGGTAAACCAT
GGACTAAAGAATCTGGAACAAAAGCTGCTCATCCAAACTCTCGATTCTGT
ACGCCAGCTGGAAATTGCAAAGTTATCGATCCACTTTGGGAAGATCCTAA
AGGTGTCCCAATCTCTGCTATCTTGTTTGGTGGACGCCGACCAGAAGGTG
TGCCATTGATCTACGAAGCATTTAATTGGCAACATGGTGTGTTTGTTGCA
AGTGCTCTTTGCTCTGAAACGACGGCTGCTGCAGAACACAAAGGCAAAGC
TATAATGAGAGATCCCTTCGCCATGAGACCATTCTTTGGATATAACGCTG
GACATTACTTTAAACACTGGTTGAGTCTTGAAGATGATAAGAAACATCAA
TTGCCTAAAATTTTCCATGTCAACTGGTTCAGAAAAGGAGAAGACGGCAA
ATTCCTATGGCCTGGATTCGGTGAAAACTGTCGTGTCTTGAAATGGGTTT
TCGATCGCGTCGACGGCAAACACGGAGTCCAAAAATCCACCGTCGGATAT
TTACCTGAAAATGACGCATTAGACTTAAATGGACTAGATGAAGATTTAAA
TATGAAAGAACTAATGTCTGTTCCCACTGACTATTGGATGGAACAACTAG
ATGATATtgagaaatattataatcaacAATTTGGTGAAGATATTCCACAA
CAATTATGGGATGAAGTACATTCTTTCAGGGAACGATTGACAAAATCTCC
TACCGCCGCTTAAATGTGTTATTTATTGGAAGATGATGATTGTTGTTGAT
GCTTTTTGTCCTTTTTAACcttatatttagaatttttcctACACCatttc
tgaaaaatgaaaaacaatttttatgatGTTGTAGTCACAATCGGACTTGT
cattttcttcttattttcCTCATTTTACTGAGTTGGAATTGTCAATAAGT
GTaaaatgattttacttttttatttagtgatcGTAAAACAAAATTACACT
AAGAAAGCTAAGCTATGCACGTTGCTAATATACAATANtttactttttta
tttagtgatcGTAAAACAAAATTACACTAAGAAAGCTAAGCTATACACGT
TGCTAATATACAATAGTATAGTAAAGAggacttttttagttttagggact
tgatttctttttaaagtgtttgttcgttttctttttgttaACAGAATTTT
TTAATTGTTCAGCTGTatttaaaaatgctattttatgtctttgttttatt
ttgttatatctttatttttcagctttcttttggtACAATATACAGTCTTT
TTTTTCGTTTATCTGTCACGGTATTATTTTTGTTTGGCTAGAGAGATATT
TATaagaaatattaaaatttaaatattatTATCATGTGATAGtttaacat
ttttgtaaacttcAAGTTTATAAGGGAGAATAATTTTTTGTTACTTTGTA
TCATCTTATTTTAATGCTAGagtttatatttgttttgtaATATTGACGTT
TTTGAAGTCAGTAAAATACAacgttttcgaaaaaaaatcaacattgcTGC
ACGGTTTTATACCCCCTAATGAATCGTTCAATTTTTTATTAATATTTGCA
GAATCaagatttcaatgtttttttccttttactCTTTTCATCAGACGAAT
Tgataagaaattaaatttttgcgtttaagagagaaaaaaaacaaatagcc
AGAAAAAACATAGTCAGCGAAGATTTTTACCTGATTTCAATATCTCGCCG
CTGGCTCACCATAGGATAACGATGGATGGCCTCACAATATTATTTcaaac
taaagtctgttccaaaaatgACAGTCAGCACATTTTGATACATTGTCCTT
GAAGGTGTAGAGATAAATTAATATACTGCTAGAAATATCGTTTTGAGTGG
ATTTCCacctttttaaaactttggaaCTTccctgatttcaaatatgtatt
cgga
Run BLAST on NCBI

transcript from alignment at scaffold_86:541421..552241+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072887 ID=TCONS_00072887|Name=TCONS_00072887|organism=Clytia hemisphaerica|type=transcript|length=10821bp|location=Sequence derived from alignment at scaffold_86:541421..552241+ (Clytia hemisphaerica)
catttttgaagtttGTTCAAACTTGTCgtttttaaacgaagaaatTTAAC AAGCACCacaaaaaagactttgaaatcaAGAAAACTAAAGTAAGTCCATC ATCTACTTTACGATTTGAGTACtaattaaagggataatcagatggtttga gatatttggcatgtgggatCCTTCTATTGCCCTGAGCAAAACCTCAATAT TTTCAAGTCCAGATATTTAAATTACAAGCTTTTGACTTTTagtaagaaaa caatagaatttcaacgtaagaaccgtgtgagaacccattttcagaaattt taaattttgatatctcgACTTTAGAATATAGTTAGACAAAAATACTTggt gattttattcaaaatcaCATAGGGTTTTAAAggcaaaaaatctcaaacca tctgattatccctttaaaatttttattctaatGGGTAAGTTGTTTAATAT GTGTGCAACTGTACTTTCAGGACAGTTTGTTCTTTACCTTGTTAAATGTG AGTCAATTAGAAATTAGAAAGTTGTGATAAAATACCTAGTATTAAAAAGA CTTTGGTCCTTATttgcaaaaactattttttaagtaaaaagtaaaacttg acaagcttttaatttttaatcatttaGATTTAATAAGATCAGTACATCCG AAAGAAGCTAGTCTTTGAAACTAGTTTAACTTACTTTCTAAAAACTGTCA TAAGATGAAATTAcacaatttttagaaaatatttatacAACACATGATAT TTATAATCTTCCATTATTTGAGAGggattttaaatttcgaaactttGACC TGTCAGACATGTAAGCATTGCTCAAGAGAGgaatttaaagtcctttgata CACGTGGTTTAGAGATTTTATcctaaaatttgaaagaaaaacatatcTGA AAGATAaaggttttgagaaaaattatagcattccATCGTGACGTCATGAC TTTTATAAAAGGCAAGCTAGAAACAGAGCTGAGATACAGTTAAATAACAG TCAACCGTTTTTAGCAACCTTGCACAAGAACCTAAACAACTTTAAAGGTA AGATTTGATGTAATTATTTTGCTAGATGGTACGTATAAGTAATAGTGAGA TATCAAAGTTTAAGTAGATAAAGAAAGAAAGTTGTGTAATTTTCGTAAGT TATCTAGAGCTAAAAACAAGTCTTCTtgggaaaaattaaatactaTTGGA TAAAAAATACAACGcaaaaatttttccattttatcATGCTTCAGTGGGCA AAACCTAAAAtaataagaaatacttcttcttTTTATGGAACCCCAAAAAT TCCAGGAAAATTGCACGAATTCCAAAATCAGTATTCAAAGCAAAGGTTTC ATTGTCACATAGAAGCCCAGTTTCGATGAACTTTGCAGAATTCTACCAGC ATCTAGCACAGTAATCCATCTTAAACTGAAAATCTTGTGTGTACTGCGCT TTAGCTTGTTCCAGCTTACCTTTTGAAAAGTTCTTTGAAAAAGATAACta gatatttcaaattttcaaatatgcTTAGGGAAGAGGAAAATTTGAGGAAA TTCAAAGGTACACAATTTTTCCTggaaaagttaaaaaacataCAGAAAAT TCTTCTAGAAAAATAGCAGGATAGCCGTATTTATCATTATCATTCCCTGA TTCAACTTAATCCCTTCAGAAAACTGTCAACAAAAATATTGTATGCATGG GTTCTCTGAAAAGATTTCTTTATAACTTCAGCCATAAAAAATCTACAGGT TGGCATGATCCCATGAAATTTATTCTTGTCtctctatttttctttgccTT GCTTTTGCTTTGCCTTTGCCTGCTTATTATTAATTGCATTTTTTAATAAT TCTAGATCAATTAgataatttaaaaaagtataACTTTCTGCCTCCTGACA AATTGCAGGGTACAAATTCCTGTAAATTCCAATTTTCACACATTGAGCAA GACTCAGACACACTGGGTCCAGAAAGCTAAGCTTTATAAATAGGAAAATG AGGGACACAAAAAGGTActtttgattatattttgattCTGAAGTCTTTCC TATAACTGGATCATGTTAAAACTATGATAAACCATTGAtgcttttcagaa tttttcatgtaaattgaaaattttactttgaaaaattcaggcaaactttc aactaaaacCAAAAGTGTCATTTAGAAATTGAATCATATTCAGAATGGGC AAATTGGGCATGAAAAATCCAGgcaaactttcaactaaaacCAAAAGTGT CATTTAGAAATTGAATCATATTCAGAATGGGCTTTTGTAGTGGCTTGAAG TGGCTttagttttcaaaatatatattgTTGAGTATGTGACTTTACTATAT GATTAATGAGATTGGATATTTTTGCTGGAGGTTAacttgtttttttaaat caaaaaatttccatggaaaatcttatttttagtttgcttttacttacttt tgatacttttgatggGTTTTTAGAGTCTCTCAATCATTCCATTTGGATTT TAGATGCCCAAAAAtacatttcattattttccctTTAGATTTAGGACATA ATGTCACTGGAGATATTATGCAAAAAGAACTGATTCAAAAGCTTATTTAC CATGAAATCAAAATCTTGTCCAAATCAAGAATATATTTTACAGACAATCG CTAGACATTTGTGACACTTTGTAAACTTGTTTGAATGTGCACTTTTAAAC TCGGTGTGCAGACGCTTAGTTATAAGTTATATGAAACACATTAAGATATT GATCTACTAGGCTATCTACTATGGAATTTGGAgtaccaaattttcaaaaa gattttgataaTTCAATCACTTTTTTAACAACCCTTCGAAGACTCAATAA CCGTAcatactttgattgttattaaTTAATTTCGATAAACTCAACACAAC CAATTGATTACTTCTATAACTATTGATtacttaaagtctgtctcaatata atttgacaaaaaaggctataacttttgatagaattcaaatTAGATAgcag ttttgtgcttgttgagaagacaaacaggagtggaacattatcataaagaa aaaattcaaaaaagattgaaaaacaaagatggaaatgaagaagaagaaaa tcaacttcttcaataattgtgcttataattatcattttcacacgagtgat tcTTTGACCTTAGAGCATCATTAATGTGAAaaacaatcttcaaaaaaatt tattttatccaaagatatagtccaaagtttgtcactgattgacttcaaaa accatcaaaaacaaacaaaaaagagcccttttttaagtcaaccagcgaca aagttttaagctgtattttttgactgaagcaatattttgtgattttattt CGTATATCTATGATGTtctaaagattaaagaatttttaatatgaaaatga aaatcatagcattattcaacaagaagttgattttctactatcttattttt catctttgtttttcaatttttttaatttttttcttttttgacagtttACA GTAGTGGAAGTACCTCGATTTTAAGCATGTTCAaaaagttcacaataacg actttctttttataacggAAACCAAACGAGTAAGAAAAAGTCAAGCAACT AAATCTCAGCGCTCCGTGGTTGTGACGtagtttacaaaattgttaagata taatgacatactttttaacaacttttttctatgtcatttttgaagcctct tcGTAGGAGAATTTTATtacacttcatggcagattaaaaagacgattaga aaacgaaagcttcttcatttttcatttttgcatttaaggggaagaatgaa attttcagaagattatttatttgatatgaggattcccatttccgtaaaAT TGCAATTCCTCATGGTTGTGAAATGgtggctatgggtaattcctttgttc ttttgccaTTTTCATTTGTTCTATGTGACGTAAAGATGCTTCACAAATCA AAGTATTTCCACTAACTGTTTGATAATATTCAACTCtgaaatatcttttt aatgagCACAAAACCAATATCTATCAGAAGTTATAGCCTTGGTTGTCTCT ATTGCAAATTATGTTGAGACAAACTTTagataaccaattgattacATATA TAGTATAGATgtctttaagaaaaaccaaaaacattgacctTAAAACCAAA GCACAATAAGAAGCAGCAGCAGCCATAAGAATAACCTTCAGTAATTACCC CACCATTTTGTGTGGGTTTCCCGAAGTAACTCATATCGTGCATTCTGATT GATCGGAGAAAAACAAAGTGGTTTTCGCGCGTGATTTTTATTAAAGAAGA ATATGTTGAAATTAGAAagagatgtcgacattagaccaacttacagtaat taattagttattcaaaagacgaAAGACCGTCATGTTCCTTTATTTATATG CTAATGACAAATGAACAGCATGGCAGTGCTTGGAACCAAAACTGTTGATA AGAATCTGCCAAAccaaacaatcaaaacaaaacacccCCACCACCCACAG TCcactttgaaaacaaaatttaaaaattgaatagaaaaccTTTTTCATCT TTGTGCCAGTAAGtccagtgaaaaaaaattttgtttctaaaaatgAACTC ACAGCTCTCTAAAAATATTATctgttaaaagtaaaaaaaggaCGGTGTGT AGTTATAGTTGGTAGAGTTATTTCCTCTCTTCTCTAACTAATAATTCTCA CTGAACTAAATTTCCTTACATTTAGTGGTGTTGTTTGCTGTTCATTCATT ACACATCCCTTACACTATATAAAGAggtttttaaaatctgaaacattaaa aattttgttaagattttgactttttttgatgtTGATGTCGCTATCAAAGA TGGCGGGTTTCCCGCCagaaattgtaaacaaaaactaGCCTGTGAAACCT ATTCCGGTCCTTGAAATATCACAGGAATAGAATTTTGGTTCggtaaaata aatcaaaagaatttgataatGAGATTTCCTGATTTCATGAATGTGCAAAG TTGCCCAGGGAATTTGATAAGCACGTTGCACTCAGTGGCTGGAGAAGGCG ACACAAAAATCactttaaactaaaattgctcGAGGTTTTAAAGTACAACA AAAATGGCACCATATGCTAAGCTACTCACAAGGTATACAATTTTTGTTTA CACCAAATTTCTcggaatttttttgcaaaatgaagtcattgcaaagcaat ttaaaaaaataaattttactcGACTGTTCGATTCGATGAATTTGAGGCTT TTGTAGTTTTTATTCCTTGACTCTCATGGACATAGATCAGCATGATTTGT TTATAGAACAAGGTATATTGTTTTGTTTGCAGTATAGTtgttaaaaaagt tttgtttgttttggctTATGACATTGTTTTTATTACAAACTTTCGacctt ttgttcttatttattttGTGTTGATGGGACTTTTTATAGCAgtatttgac tgaaatttgaaaCCTTTTATAAAGCACTCAATGCCTTTTTACTTCCGCGT CTATAACAAGTTTTTAGATAGATTTATCTATTTTTGTGAGTTTTGGACGC ATTCAACCGAAAATATAgaaacatttttagatttcttacTCCTAAACTAA ATTATTCATGATCAATACAAGAGTTTCCAATCCCTATACAAATGACCTCT TTTCAATCTCTAAGCTATGATTCCTATAATATTTCTTGACTTCATTCATC CCGTTTAAGGATTTGAATATGTCTTTTAAatacaaaatttagaaatgtaA AAATGGCTTTACAATTAATGATAGGAACTTATCAGTTAGATTTAAATAGT TTTTAAAGATTAATGTCTTgcattaagaagattaaaagaCATTTAAGAGT TTCTATTGCTCAAAACAGTTAGACTCACACCTTAATTTAAACCCTATTGT CAAGACACAAAAATTGAAATGCTAGAATTCTAAGTACCTTATAACCAACC TATatgtaaaatagaaaatgaaccACTGAACTGACTTggatattttttaa ttcaagggTTTATTTTATAGATAAACTTGGCACTACATTAGACATTCCCA TACTTTCCCATTAATTCAAAAGACTCCTCAAAATCAAAAGCgtgaaaatg ttatatttttgtttcaggTTCAGCCTTCACTCAACCCACTTATTTCGAGC TCTGCAATTACGACAAATGGCATccttatcaaaaaatatttctgtcACAC ATGGCAATTTTGAAACACTCCCAAATAAAGTAAAGGATTTTGTCgtacaa aaaagtgaattatgtCAGCCAGATTTTCTCCACATTTGTGATGGCTCAGA AGATGAGGCACAAAGCTTAGCTGATCTTCTTGTAAAAAATGGAACTgcaa gaaaattggaaaaaatggataATTGGTAAGAATGCACTTATGATTACTAT TAACAAAGAATACCTCCACTCACTTTTAACTaaaaaccattttgattttt ttaatcaaaattgtcatGATAAAGATTgaatattctttatttttagcTAT GCTGTCCGTACTAATCCAGCTGATGTTGCACGTGTTGAATCAAAAACGTT GATCTGTACTGAAAATAAACATGATACTGTCCCCCACACCAAAGATGGAG TTAGATGTTCAGTTGGACAATGGACTGAGCCTAAAGAAATGAAGGAAAAG CTCCAAGGATTATTCCAAGGATGCATGAAGGGTAAAGATTTGAGATTTGA AATTATACTTAATACATTGCTCTGATTTGTGAGTGTTTTTTACATGGTTT TCACATGGTTATGTTTCatctgattttttgtttttattcatgATCTCTTT TGTATCTTATAGGAAGAACCATGTatgttattccattttcaatgGGACCT GTTGGCTCTCCTTTGTCCAAAATTGGTATTGAACTTACTGATTCTCCATA TGTCTCAATGTCTATGGGTGTTATGACTAGAATGGGATCAAAAGTATTGA ATTCTCTGGGTGATGGTGATTTTGTCAAATGTTCTCACTCTGTTGGACAA CCTTTACCTCTTGAAAAACCAGACCCATATAACTGGCCATGTAATCCAGA AAAGACTGTTATCACACATTTCCCAGCTGACAGAGAAATCATCTCCTTTG GATCTGGTTATGGTGGAAACTCACTTCttggaaagaaatgttttgcTTTG AGAATCGCATCTGCTGTTGCTAGAGATGAAGGATGGTTAGCTGAACACAT GCTGGTATGTTCTCATTCCCCTTGAATTCGCAAAGTTAATTTATTCATGC TATCAAGTGCTATCTATGAAATCTGAAAAGTAACTAATTGGTTTTCATTG TCACCTCTTTTAGATCCTTGGATTGACTAACCCACAAGGTGAAAAGAAAT ATGTTGCTGCTGCATTTCCAAGTGCTTGTGGAAAGACAAACTTAGCTATG TTAACCCCAACTTTACCAGGATGGAAAGCAGAATGTGTCGGTGATGATAT TGCATGGATGAAATTTGACGAGGAAGGTGTCTTGAGAGCTATTAATCCAG AATATGGATTCTTTGGTGTTGCCCCCGGAACCTCAATGGAAACCAACCCA CAAGCATTAATTGCTTGTCAGAAGAACACTGTCTTTACTAACTGCGCTAC TACTGATGATGGTGAAATCTACTGGGAAGGTACAAcaagatcaaatttaa tttctcaGACTTCTTCTTGCCCTTTTTTAATTGCTGGAAATGatcatcaa tttttaaaaatgactGAAGTTCTTAAGCTACACTCTATTAATTTCGCTAT CAATGCGCTAATCTGTATTCATGATTCATGAATATTAATTCGattaattt gatgaattttttctcCAGGTCTTGAAAAGGAAGTCAACCTTGAAGGTCGT TCAGTCACTGACTGGTTGGGTAAACCATGGACTAAAGAATCTGGAACAAA AGCTGCTCATCCAAACTCTCGATTCTGTACGCCAGCTGGAAATTGCAAAG TTATCGATCCACTTTGGGAAGATCCTAAAGGTGTCCCAATCTCTGCTATT TTGTTTGGTGGACGCCGACCAGAAGGTGTGCCATTGATCTACGAAGCATT TAATTGGCAACATGGTGTGTTTGTTGCAAGTGCTCTTTGCTCTGAAACGA CGGCTGCTGCAGAACACAAAGGCAAAGCTATAATGAGAGATCCCTTCGCC ATGAGACCATTCTTTGGATATAACGCTGGACATTACTTTAAACACTGGCT GAGTCTTGAAGATGATAAGAAACATCAATTGCCTAAAATTTTCCATGTCA ACTGGTTCAGGAAAGGAGAAGACGGCAAATTCCTATGGCCTGGTAAGTCC TTGTTTACATTCTCATGGCTCTCTTTCATTTCATATAGACTTTACAAATT AANACCAACCCACAAGCATTAATTGCTTGTCAGAAGAACACTGTCTTTAC TAACTGCGCTACTACTGATGATGGTGAAATCTACTGGGAAGGTACGAcaa gatcaaatttaatttctcaGACTTCTTCTTGCCCTTTTTTAATTGCTGGA AATGatcatcaatttttaaaaatgactGAAGTTCTTAAGCTACTCTATTC ATTTCGCTATCAATGCGCTAATCTGTATTCATGATTCATGAATATTAATT CGattaatttgatgaattttttctcCAGGTCTTGAAAAGGAAGTCAACCT TGAAGGTCGTTCAGTCACTGACTGGTTGGGTAAACCATGGACTAAAGAAT CTGGAACAAAAGCTGCTCATCCAAACTCTCGATTCTGTACGCCAGCTGGA AATTGCAAAGTTATCGATCCACTTTGGGAAGATCCTAAAGGTGTCCCAAT CTCTGCTATCTTGTTTGGTGGACGCCGACCAGAAGGTGTGCCATTGATCT ACGAAGCATTTAATTGGCAACATGGTGTGTTTGTTGCAAGTGCTCTTTGC TCTGAAACGACGGCTGCTGCAGAACACAAAGGCAAAGCTATAATGAGAGA TCCCTTCGCCATGAGACCATTCTTTGGATATAACGCTGGACATTACTTTA AACACTGGTTGAGTCTTGAAGATGATAAGAAACATCAATTGCCTAAAATT TTCCATGTCAACTGGTTCAGAAAAGGAGAAGACGGCAAATTCCTATGGCC TGGTAAGTCCTTGTTTACATTCTCATGGCTCTCTTTCATTTCATATAgac ttttcaaattatttgtGAACCTTTCCTCttcattttataaaatttccTTG AATACCAGTTTGAAAGACTAAAATCTCTCATATTAAAAATGGCATGCAAT CTCAAAGGAGGGATTATAATAGTTTTCTTAGCTGTAGTTTCCAAACAACC TATAACAATTAcaataattttcatatttcagGATTCGGTGAAAACTGTCG TGTCTTGAAATGGGTTTTCGATCGCGTCGACGGCAAACACGGAGTCCAAA AATCCACCGTCGGATATTTACCTGAAAATGACGCATTAGACTTAAATGGA CTAGATGAAGATTTAAATATGAAAGAACTAATGTCTGTTCCCACTGACTA TTGGATGGAACAACTAGATGATATtgagaaatattataatcaacAATTTG GTGAAGATATTCCACAACAATTATGGGATGAAGTACATTCTTTCAGGGAA CGATTGACAAAATCTCCTACCGCCGCTTAAATGTGTTATTTATTGGAAGA TGATGATTGTTGTTGATGCTTTTTGTCCTTTTTAACcttatatttagaat ttttcctACACCatttctgaaaaatgaaaaacaatttttatgatGTTGTA GTCACAATCGGACTTGTcattttcttcttattttcCTCATTTTACTGAGT TGGAATTGTCAATAAGTGTaaaatgattttacttttttatttagtgatcG TAAAACAAAATTACACTAAGAAAGCTAAGCTATGCACGTTGCTAATATAC AATANtttacttttttatttagtgatcGTAAAACAAAATTACACTAAGAA AGCTAAGCTATACACGTTGCTAATATACAATAGTATAGTAAAGAggactt ttttagttttagggacttgatttctttttaaagtgtttgttcgttttctt tttgttaACAGAATTTTTTAATTGTTCAGCTGTatttaaaaatgctattt tatgtctttgttttattttgttatatctttatttttcagctttcttttgg tACAATATACAGTCTTTTTTTTCGTTTATCTGTCACGGTATTATTTTTGT TTGGCTAGAGAGATATTTATaagaaatattaaaatttaaatattatTATC ATGTGATAGtttaacatttttgtaaacttcAAGTTTATAAGGGAGAATAA TTTTTTGTTACTTTGTATCATCTTATTTTAATGCTAGagtttatatttgt tttgtaATATTGACGTTTTTGAAGTCAGTAAAATACAacgttttcgaaaa aaaatcaacattgcTGCACGGTTTTATACCCCCTAATGAATCGTTCAATT TTTTATTAATATTTGCAGAATCaagatttcaatgtttttttccttttact CTTTTCATCAGACGAATTgataagaaattaaatttttgcgtttaagagag aaaaaaaacaaatagccAGAAAAAACATAGTCAGCGAAGATTTTTACCTG ATTTCAATATCTCGCCGCTGGCTCACCATAGGATAACGATGGATGGCCTC ACAATATTATTTcaaactaaagtctgttccaaaaatgACAGTCAGCACAT TTTGATACATTGTCCTTGAAGGTGTAGAGATAAATTAATATACTGCTAGA AATATCGTTTTGAGTGGATTTCCacctttttaaaactttggaaCTTccct gatttcaaatatgtattcgga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045230XLOC_045230Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072887-exon-scaffold_86-1491911889:541421..541509TCONS_00072887-exon-scaffold_86-1491911889:541421..541509Clytia hemisphaericaexon
TCONS_00072887-exon-scaffold_86-1510915933:541421..541509TCONS_00072887-exon-scaffold_86-1510915933:541421..541509Clytia hemisphaericaexon
TCONS_00072887-exon-scaffold_86-1575043694:541421..541509TCONS_00072887-exon-scaffold_86-1575043694:541421..541509Clytia hemisphaericaexon
TCONS_00072887-exon-scaffold_86-1491911889:547538..547795TCONS_00072887-exon-scaffold_86-1491911889:547538..547795Clytia hemisphaericaexon
TCONS_00072887-exon-scaffold_86-1510915933:547538..547795TCONS_00072887-exon-scaffold_86-1510915933:547538..547795Clytia hemisphaericaexon
TCONS_00072887-exon-scaffold_86-1575043694:547538..547795TCONS_00072887-exon-scaffold_86-1575043694:547538..547795Clytia hemisphaericaexon
TCONS_00072887-exon-scaffold_86-1491911889:547917..548101TCONS_00072887-exon-scaffold_86-1491911889:547917..548101Clytia hemisphaericaexon
TCONS_00072887-exon-scaffold_86-1510915933:547917..548101TCONS_00072887-exon-scaffold_86-1510915933:547917..548101Clytia hemisphaericaexon
TCONS_00072887-exon-scaffold_86-1575043694:547917..548101TCONS_00072887-exon-scaffold_86-1575043694:547917..548101Clytia hemisphaericaexon
TCONS_00072887-exon-scaffold_86-1491911889:548233..548624TCONS_00072887-exon-scaffold_86-1491911889:548233..548624Clytia hemisphaericaexon
TCONS_00072887-exon-scaffold_86-1510915933:548233..548624TCONS_00072887-exon-scaffold_86-1510915933:548233..548624Clytia hemisphaericaexon
TCONS_00072887-exon-scaffold_86-1575043694:548233..548624TCONS_00072887-exon-scaffold_86-1575043694:548233..548624Clytia hemisphaericaexon
TCONS_00072887-exon-scaffold_86-1491911889:548734..549049TCONS_00072887-exon-scaffold_86-1491911889:548734..549049Clytia hemisphaericaexon
TCONS_00072887-exon-scaffold_86-1510915933:548734..549049TCONS_00072887-exon-scaffold_86-1510915933:548734..549049Clytia hemisphaericaexon
TCONS_00072887-exon-scaffold_86-1575043694:548734..549049TCONS_00072887-exon-scaffold_86-1575043694:548734..549049Clytia hemisphaericaexon
TCONS_00072887-exon-scaffold_86-1491911889:550049..550522TCONS_00072887-exon-scaffold_86-1491911889:550049..550522Clytia hemisphaericaexon
TCONS_00072887-exon-scaffold_86-1510915933:550049..550522TCONS_00072887-exon-scaffold_86-1510915933:550049..550522Clytia hemisphaericaexon
TCONS_00072887-exon-scaffold_86-1575043694:550049..550522TCONS_00072887-exon-scaffold_86-1575043694:550049..550522Clytia hemisphaericaexon
TCONS_00072887-exon-scaffold_86-1491911889:550752..552241TCONS_00072887-exon-scaffold_86-1491911889:550752..552241Clytia hemisphaericaexon
TCONS_00072887-exon-scaffold_86-1510915933:550752..552241TCONS_00072887-exon-scaffold_86-1510915933:550752..552241Clytia hemisphaericaexon
TCONS_00072887-exon-scaffold_86-1575043694:550752..552241TCONS_00072887-exon-scaffold_86-1575043694:550752..552241Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:541421..552241 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0 0 0.000301351 0.00984525 4.04578e-05 0.1986 2.99074e-06 2.26647e-09 4.64918e-08 0 0 0 0 0 0 0 0 0 0 0 0 1.45113e-08 0 0
Blast
BLAST of TCONS_00072887 vs. Swiss-Prot (Human)
Match: PCKGC (Phosphoenolpyruvate carboxykinase, cytosolic [GTP] OS=Homo sapiens GN=PCK1 PE=1 SV=3)

HSP 1 Score: 816.994 bits (2109), Expect = 0.000e+0
Identity = 377/616 (61.20%), Postives = 474/616 (76.95%), Query Frame = 1
Query:  148 LSKNISVTHGNFETLPNKVKDFVVQKSELCQPDFLHICDGSEDEAQSLADLLVKNGTARKLEKMDNCYAVRTNPADVARVESKTLICTENKHDTVPHTKDGVRCSVGQWTEPKEMKEKLQGLFQGCMKGRTMYVIPFSMGPVGSPLSKIGIELTDSPYVSMSMGVMTRMGSKVLNSLGDGDFVKCSHSVGQPLPLEKPDPYNWPCNPEKTVITHFPADREIISFGSGYGGNSLLGKKCFALRIASAVARDEGWLAEHMLILGLTNPQGEKKYVAAAFPSACGKTNLAMLTPTLPGWKAECVGDDIAWMKFDEEGVLRAINPEYGFFGVAPGTSMETNPQALIACQKNTVFTNCATTDDGEIYWEGLEKEVNLEGRSVTDWLGKPWTKESGTKAAHPNSRFCTPAGNCKVIDPLWEDPKGVPISAILFGGRRPEGVPLIYEAFNWQHGVFVASALCSETTAAAEHKGKAIMRDPFAMRPFFGYNAGHYFKHWLSLEDDKKHQLPKIFHVNWFRKGEDGKFLWPGFGENCRVLKWVFDRVDGKHGVQKSTVGYLPENDALDLNGLDEDLNMKELMSVPTDYWMEQLDDIEKYYNQQFGEDIPQQLWDEVHSFRERLTK 1995
            L+ +  V  G+ ++LP  V++F+   +ELCQPD +HICDGSE+E   L   + + G  R+L+K DNC+   T+P DVAR+ESKT+I T+ + DTVP  K G+   +G+W   ++ ++     F GCMKGRTMYVIPFSMGP+GSPLSKIGIELTDSPYV  SM +MTRMG+ VL ++GDG+FVKC HSVG PLPL+KP   NWPCNPE T+I H P  REIISFGSGYGGNSLLGKKCFALR+AS +A++EGWLAEHMLILG+TNP+GEKKY+AAAFPSACGKTNLAM+ P+LPGWK ECVGDDIAWMKFD +G LRAINPE GFFGVAPGTS++TNP A+   QKNT+FTN A T DG +YWEG+++ +   G ++T W  K W+ E G   AHPNSRFCTPA  C +ID  WE P+GVPI  I+FGGRRP GVPL+YEA +WQHGVFV +A+ SE TAAAEHKGK IM DPFAMRPFFGYN G Y  HWLS+      +LPKIFHVNWFRK ++GKFLWPGFGEN RVL+W+F+R+DGK   + + +GY+P+ DAL+L GL   +NM EL S+  ++W ++++DIEKY   Q   D+P ++  E+ + ++R+++
Sbjct:    9 LNLSAKVVQGSLDSLPQAVREFLENNAELCQPDHIHICDGSEEENGRLLGQMEEEGILRRLKKYDNCWLALTDPRDVARIESKTVIVTQEQRDTVPIPKTGL-SQLGRWMSEEDFEKAFNARFPGCMKGRTMYVIPFSMGPLGSPLSKIGIELTDSPYVVASMRIMTRMGTPVLEAVGDGEFVKCLHSVGCPLPLQKPLVNNWPCNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALRMASRLAKEEGWLAEHMLILGITNPEGEKKYLAAAFPSACGKTNLAMMNPSLPGWKVECVGDDIAWMKFDAQGHLRAINPENGFFGVAPGTSVKTNPNAIKTIQKNTIFTNVAETSDGGVYWEGIDEPL-ASGVTITSWKNKEWSSEDGEPCAHPNSRFCTPASQCPIIDAAWESPEGVPIEGIIFGGRRPAGVPLVYEALSWQHGVFVGAAMRSEATAAAEHKGKIIMHDPFAMRPFFGYNFGKYLAHWLSMAQHPAAKLPKIFHVNWFRKDKEGKFLWPGFGENSRVLEWMFNRIDGKASTKLTPIGYIPKEDALNLKGLGH-INMMELFSISKEFWEKEVEDIEKYLEDQVNADLPCEIEREILALKQRISQ 621          
The following BLAST results are available for this feature:
BLAST of TCONS_00072887 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PCKGC0.000e+061.20Phosphoenolpyruvate carboxykinase, cytosolic [GTP]... [more]
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