TCONS_00072885 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072885
Unique NameTCONS_00072885
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3260

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072885 ID=TCONS_00072885|Name=TCONS_00072885|organism=Clytia hemisphaerica|type=transcript|length=3260bp
CTTGGAGAGCTATATAAATGAGGAGCTACTGGTTTCTCCAAGTATTATTA
TAtaatcatttttgaagtttGTTCAAACTTGTCgtttttaaacgaagaaa
tTTAACAAGCACCacaaaaaagactttgaaatcaAGAAAACTAAAgTTCA
GCCTTCACTCAACCCACTTATTTCGAGCTCTGCAATTACGACAAATGGCA
TccttatcaaaaaatatttctgtcACACATGGCAATTTTGAAACACTCCC
AAATAAAGTAAAGGATTTTGTCgtacaaaaaagtgaattatgtCAGCCAG
ATTTTCTCCACATTTGTGATGGCTCAGAAGATGAGGCACAAAGCTTAGCT
GATCTTCTTGTAAAAAATGGAACTgcaagaaaattggaaaaaatggataA
TTGcTATGCTGTCCGTACTAATCCAGCTGATGTTGCACGTGTTGAATCAA
AAACGTTGATCTGTACTGAAAATAAACATGATACTGTCCCCCACACCAAA
GATGGAGTTAGATGTTCAGTTGGACAATGGACTGAGCCTAAAGAAATGAA
GGAAAAGCTCCAAGGATTATTCCAAGGATGCATGAAGGGAAGAACCATGT
atgttattccattttcaatgGGACCTGTTGGCTCTCCTTTGTCCAAAATT
GGTATTGAACTTACTGATTCTCCATATGTCTCAATGTCTATGGGTGTTAT
GACTAGAATGGGATCAAAAGTATTGAATTCTCTGGGTGATGGTGATTTTG
TCAAATGTTCTCACTCTGTTGGACAACCTTTACCTCTTGAAAAACCAGAC
CCATATAACTGGCCATGTAATCCAGAAAAGACTGTTATCACACATTTCCC
AGCTGACAGAGAAATCATCTCCTTTGGATCTGGTTATGGTGGAAACTCAC
TTCttggaaagaaatgttttgcTTTGAGAATCGCATCTGCTGTTGCTAGA
GATGAAGGATGGTTAGCTGAACACATGCTGATCCTTGGATTGACTAACCC
ACAAGGTGAAAAGAAATATGTTGCTGCTGCATTTCCAAGTGCTTGTGGAA
AGACAAACTTAGCTATGTTAACCCCAACTTTACCAGGATGGAAAGCAGAA
TGTGTCGGTGATGATATTGCATGGATGAAATTTGACGAGGAAGGTGTCTT
GAGAGCTATTAATCCAGAATATGGATTCTTTGGTGTTGCCCCCGGAACCT
CAATGGAAACCAACCCACAAGCATTAATTGCTTGTCAGAAGAACACTGTC
TTTACTAACTGCGCTACTACTGATGATGGTGAAATCTACTGGGAAGGTCT
TGAAAAGGAAGTCAACCTTGAAGGTCGTTCAGTCACTGACTGGTTGGGTA
AACCATGGACTAAAGAATCTGGAACAAAAGCTGCTCATCCAAACTCTCGA
TTCTGTACGCCAGCTGGAAATTGCAAAGTTATCGATCCACTTTGGGAAGA
TCCTAAAGGTGTCCCAATCTCTGCTATTTTGTTTGGTGGACGCCGACCAG
AAGGTGTGCCATTGATCTACGAAGCATTTAATTGGCAACATGGTGTGTTT
GTTGCAAGTGCTCTTTGCTCTGAAACGACGGCTGCTGCAGAACACAAAGG
CAAAGCTATAATGAGAGATCCCTTCGCCATGAGACCATTCTTTGGATATA
ACGCTGGACATTACTTTAAACACTGGCTGAGTCTTGAAGATGATAAGAAA
CATCAATTGCCTAAAATTTTCCATGTCAACTGGTTCAGGAAAGGAGAAGA
CGGCAAATTCCTATGGCCTGGATTCGGTGAAAACTGTCGTGTCTTGAAAT
GGGTTTTCGATCGCGTCGACGGCAAACACGGAGTCCAAAAATCCACCGTC
GGATATTTACCTGAAAATGACGCATTAGACTTAAATGGACTAGATGAAGA
TTTAAATATGAAAGAACTAATGTCTGTTCCCACTGACTATTGGATGGAAC
AACTAGATGATATtgagaaatattataatcaacAATTTGGTGAAGATATT
CCACAACAATTATGGGATGAAGTACATTCTTTCAGGGAACGATTGACAAA
ATCTCCTACCGCCGCTTAAATGTGTTATTTATTGGAAGATGATGATTGTT
GTTGATGCTTTTTGTCCTTTTTAACcttatatttagaatttttcctACAC
CatttctgaaaaatgaaaaacaatttttatgatGTTGTAGTCACAATCGG
ACTTGTcattttcttcttattttcCTCATTTTACTGAGTTGGAATTGTCA
ATAAGTGTaaaatgattttacttttttatttagtgatcGTAAAACAAAAT
TACACTAAGAAAGCTAAGCTATGCACGTTGCTAATATACAATANtttact
tttttatttagtgatcGTAAAACAAAATTACACTAAGAAAGCTAAGCTAT
ACACGTTGCTAATATACAATAGTATAGTAAAGAggacttttttagtttta
gggacttgatttctttttaaagtgtttgttcgttttctttttgttaACAG
AATTTTTTAATTGTTCAGCTGTatttaaaaatgctattttatgtctttgt
tttattttgttatatctttatttttcagctttcttttggtACAATATACA
GTCTTTTTTTTCGTTTATCTGTCACGGTATTATTTTTGTTTGGCTAGAGA
GATATTTATaagaaatattaaaatttaaatattatTATCATGTGATAGtt
taacatttttgtaaacttcAAGTTTATAAGGGAGAATAATTTTTTGTTAC
TTTGTATCATCTTATTTTAATGCTAGagtttatatttgttttgtaATATT
GACGTTTTTGAAGTCAGTAAAATACAacgttttcgaaaaaaaatcaacat
tgcTGCACGGTTTTATACCCCCTAATGAATCGTTCAATTTTTTATTAATA
TTTGCAGAATCaagatttcaatgtttttttccttttactCTTTTCATCAG
ACGAATTgataagaaattaaatttttgcgtttaagagagaaaaaaaacaa
atagccAGAAAAAACATAGTCAGCGAAGATTTTTACCTGATTTCAATATC
TCGCCGCTGGCTCACCATAGGATAACGATGGATGGCCTCACAATATTATT
TcaaactaaagtctgttccaaaaatgACAGTCAGCACATTTTGATACATT
GTCCTTGAAGGTGTAGAGATAAATTAATATACTGCTAGAAATATCGTTTT
GAGTGGATTTCCacctttttaaaactttggaaCTTccctgatttcaaata
tgtattcgga
Run BLAST on NCBI

transcript from alignment at scaffold_86:541365..552241+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072885 ID=TCONS_00072885|Name=TCONS_00072885|organism=Clytia hemisphaerica|type=transcript|length=10877bp|location=Sequence derived from alignment at scaffold_86:541365..552241+ (Clytia hemisphaerica)
CTTGGAGAGCTATATAAATGAGGAGCTACTGGTTTCTCCAAGTATTATTA TAtaatcatttttgaagtttGTTCAAACTTGTCgtttttaaacgaagaaa tTTAACAAGCACCacaaaaaagactttgaaatcaAGAAAACTAAAGTAAG TCCATCATCTACTTTACGATTTGAGTACtaattaaagggataatcagatg gtttgagatatttggcatgtgggatCCTTCTATTGCCCTGAGCAAAACCT CAATATTTTCAAGTCCAGATATTTAAATTACAAGCTTTTGACTTTTagta agaaaacaatagaatttcaacgtaagaaccgtgtgagaacccattttcag aaattttaaattttgatatctcgACTTTAGAATATAGTTAGACAAAAATA CTTggtgattttattcaaaatcaCATAGGGTTTTAAAggcaaaaaatctc aaaccatctgattatccctttaaaatttttattctaatGGGTAAGTTGTT TAATATGTGTGCAACTGTACTTTCAGGACAGTTTGTTCTTTACCTTGTTA AATGTGAGTCAATTAGAAATTAGAAAGTTGTGATAAAATACCTAGTATTA AAAAGACTTTGGTCCTTATttgcaaaaactattttttaagtaaaaagtaa aacttgacaagcttttaatttttaatcatttaGATTTAATAAGATCAGTA CATCCGAAAGAAGCTAGTCTTTGAAACTAGTTTAACTTACTTTCTAAAAA CTGTCATAAGATGAAATTAcacaatttttagaaaatatttatacAACACA TGATATTTATAATCTTCCATTATTTGAGAGggattttaaatttcgaaact ttGACCTGTCAGACATGTAAGCATTGCTCAAGAGAGgaatttaaagtcct ttgataCACGTGGTTTAGAGATTTTATcctaaaatttgaaagaaaaacat atcTGAAAGATAaaggttttgagaaaaattatagcattccATCGTGACGT CATGACTTTTATAAAAGGCAAGCTAGAAACAGAGCTGAGATACAGTTAAA TAACAGTCAACCGTTTTTAGCAACCTTGCACAAGAACCTAAACAACTTTA AAGGTAAGATTTGATGTAATTATTTTGCTAGATGGTACGTATAAGTAATA GTGAGATATCAAAGTTTAAGTAGATAAAGAAAGAAAGTTGTGTAATTTTC GTAAGTTATCTAGAGCTAAAAACAAGTCTTCTtgggaaaaattaaatact aTTGGATAAAAAATACAACGcaaaaatttttccattttatcATGCTTCAG TGGGCAAAACCTAAAAtaataagaaatacttcttcttTTTATGGAACCCC AAAAATTCCAGGAAAATTGCACGAATTCCAAAATCAGTATTCAAAGCAAA GGTTTCATTGTCACATAGAAGCCCAGTTTCGATGAACTTTGCAGAATTCT ACCAGCATCTAGCACAGTAATCCATCTTAAACTGAAAATCTTGTGTGTAC TGCGCTTTAGCTTGTTCCAGCTTACCTTTTGAAAAGTTCTTTGAAAAAGA TAACtagatatttcaaattttcaaatatgcTTAGGGAAGAGGAAAATTTG AGGAAATTCAAAGGTACACAATTTTTCCTggaaaagttaaaaaacataCA GAAAATTCTTCTAGAAAAATAGCAGGATAGCCGTATTTATCATTATCATT CCCTGATTCAACTTAATCCCTTCAGAAAACTGTCAACAAAAATATTGTAT GCATGGGTTCTCTGAAAAGATTTCTTTATAACTTCAGCCATAAAAAATCT ACAGGTTGGCATGATCCCATGAAATTTATTCTTGTCtctctatttttctt tgccTTGCTTTTGCTTTGCCTTTGCCTGCTTATTATTAATTGCATTTTTT AATAATTCTAGATCAATTAgataatttaaaaaagtataACTTTCTGCCTC CTGACAAATTGCAGGGTACAAATTCCTGTAAATTCCAATTTTCACACATT GAGCAAGACTCAGACACACTGGGTCCAGAAAGCTAAGCTTTATAAATAGG AAAATGAGGGACACAAAAAGGTActtttgattatattttgattCTGAAGT CTTTCCTATAACTGGATCATGTTAAAACTATGATAAACCATTGAtgcttt tcagaatttttcatgtaaattgaaaattttactttgaaaaattcaggcaa actttcaactaaaacCAAAAGTGTCATTTAGAAATTGAATCATATTCAGA ATGGGCAAATTGGGCATGAAAAATCCAGgcaaactttcaactaaaacCAA AAGTGTCATTTAGAAATTGAATCATATTCAGAATGGGCTTTTGTAGTGGC TTGAAGTGGCTttagttttcaaaatatatattgTTGAGTATGTGACTTTA CTATATGATTAATGAGATTGGATATTTTTGCTGGAGGTTAacttgttttt ttaaatcaaaaaatttccatggaaaatcttatttttagtttgcttttact tacttttgatacttttgatggGTTTTTAGAGTCTCTCAATCATTCCATTT GGATTTTAGATGCCCAAAAAtacatttcattattttccctTTAGATTTAG GACATAATGTCACTGGAGATATTATGCAAAAAGAACTGATTCAAAAGCTT ATTTACCATGAAATCAAAATCTTGTCCAAATCAAGAATATATTTTACAGA CAATCGCTAGACATTTGTGACACTTTGTAAACTTGTTTGAATGTGCACTT TTAAACTCGGTGTGCAGACGCTTAGTTATAAGTTATATGAAACACATTAA GATATTGATCTACTAGGCTATCTACTATGGAATTTGGAgtaccaaatttt caaaaagattttgataaTTCAATCACTTTTTTAACAACCCTTCGAAGACT CAATAACCGTAcatactttgattgttattaaTTAATTTCGATAAACTCAA CACAACCAATTGATTACTTCTATAACTATTGATtacttaaagtctgtctc aatataatttgacaaaaaaggctataacttttgatagaattcaaatTAGA TAgcagttttgtgcttgttgagaagacaaacaggagtggaacattatcat aaagaaaaaattcaaaaaagattgaaaaacaaagatggaaatgaagaaga agaaaatcaacttcttcaataattgtgcttataattatcattttcacacg agtgattcTTTGACCTTAGAGCATCATTAATGTGAAaaacaatcttcaaa aaaatttattttatccaaagatatagtccaaagtttgtcactgattgact tcaaaaaccatcaaaaacaaacaaaaaagagcccttttttaagtcaacca gcgacaaagttttaagctgtattttttgactgaagcaatattttgtgatt ttatttCGTATATCTATGATGTtctaaagattaaagaatttttaatatga aaatgaaaatcatagcattattcaacaagaagttgattttctactatctt atttttcatctttgtttttcaatttttttaatttttttcttttttgacag tttACAGTAGTGGAAGTACCTCGATTTTAAGCATGTTCAaaaagttcaca ataacgactttctttttataacggAAACCAAACGAGTAAGAAAAAGTCAA GCAACTAAATCTCAGCGCTCCGTGGTTGTGACGtagtttacaaaattgtt aagatataatgacatactttttaacaacttttttctatgtcatttttgaa gcctcttcGTAGGAGAATTTTATtacacttcatggcagattaaaaagacg attagaaaacgaaagcttcttcatttttcatttttgcatttaaggggaag aatgaaattttcagaagattatttatttgatatgaggattcccatttccg taaaATTGCAATTCCTCATGGTTGTGAAATGgtggctatgggtaattcct ttgttcttttgccaTTTTCATTTGTTCTATGTGACGTAAAGATGCTTCAC AAATCAAAGTATTTCCACTAACTGTTTGATAATATTCAACTCtgaaatat ctttttaatgagCACAAAACCAATATCTATCAGAAGTTATAGCCTTGGTT GTCTCTATTGCAAATTATGTTGAGACAAACTTTagataaccaattgatta cATATATAGTATAGATgtctttaagaaaaaccaaaaacattgacctTAAA ACCAAAGCACAATAAGAAGCAGCAGCAGCCATAAGAATAACCTTCAGTAA TTACCCCACCATTTTGTGTGGGTTTCCCGAAGTAACTCATATCGTGCATT CTGATTGATCGGAGAAAAACAAAGTGGTTTTCGCGCGTGATTTTTATTAA AGAAGAATATGTTGAAATTAGAAagagatgtcgacattagaccaacttac agtaattaattagttattcaaaagacgaAAGACCGTCATGTTCCTTTATT TATATGCTAATGACAAATGAACAGCATGGCAGTGCTTGGAACCAAAACTG TTGATAAGAATCTGCCAAAccaaacaatcaaaacaaaacacccCCACCAC CCACAGTCcactttgaaaacaaaatttaaaaattgaatagaaaaccTTTT TCATCTTTGTGCCAGTAAGtccagtgaaaaaaaattttgtttctaaaaat gAACTCACAGCTCTCTAAAAATATTATctgttaaaagtaaaaaaaggaCG GTGTGTAGTTATAGTTGGTAGAGTTATTTCCTCTCTTCTCTAACTAATAA TTCTCACTGAACTAAATTTCCTTACATTTAGTGGTGTTGTTTGCTGTTCA TTCATTACACATCCCTTACACTATATAAAGAggtttttaaaatctgaaac attaaaaattttgttaagattttgactttttttgatgtTGATGTCGCTAT CAAAGATGGCGGGTTTCCCGCCagaaattgtaaacaaaaactaGCCTGTG AAACCTATTCCGGTCCTTGAAATATCACAGGAATAGAATTTTGGTTCggt aaaataaatcaaaagaatttgataatGAGATTTCCTGATTTCATGAATGT GCAAAGTTGCCCAGGGAATTTGATAAGCACGTTGCACTCAGTGGCTGGAG AAGGCGACACAAAAATCactttaaactaaaattgctcGAGGTTTTAAAGT ACAACAAAAATGGCACCATATGCTAAGCTACTCACAAGGTATACAATTTT TGTTTACACCAAATTTCTcggaatttttttgcaaaatgaagtcattgcaa agcaatttaaaaaaataaattttactcGACTGTTCGATTCGATGAATTTG AGGCTTTTGTAGTTTTTATTCCTTGACTCTCATGGACATAGATCAGCATG ATTTGTTTATAGAACAAGGTATATTGTTTTGTTTGCAGTATAGTtgttaa aaaagttttgtttgttttggctTATGACATTGTTTTTATTACAAACTTTC GaccttttgttcttatttattttGTGTTGATGGGACTTTTTATAGCAgta tttgactgaaatttgaaaCCTTTTATAAAGCACTCAATGCCTTTTTACTT CCGCGTCTATAACAAGTTTTTAGATAGATTTATCTATTTTTGTGAGTTTT GGACGCATTCAACCGAAAATATAgaaacatttttagatttcttacTCCTA AACTAAATTATTCATGATCAATACAAGAGTTTCCAATCCCTATACAAATG ACCTCTTTTCAATCTCTAAGCTATGATTCCTATAATATTTCTTGACTTCA TTCATCCCGTTTAAGGATTTGAATATGTCTTTTAAatacaaaatttagaa atgtaAAAATGGCTTTACAATTAATGATAGGAACTTATCAGTTAGATTTA AATAGTTTTTAAAGATTAATGTCTTgcattaagaagattaaaagaCATTT AAGAGTTTCTATTGCTCAAAACAGTTAGACTCACACCTTAATTTAAACCC TATTGTCAAGACACAAAAATTGAAATGCTAGAATTCTAAGTACCTTATAA CCAACCTATatgtaaaatagaaaatgaaccACTGAACTGACTTggatatt ttttaattcaagggTTTATTTTATAGATAAACTTGGCACTACATTAGACA TTCCCATACTTTCCCATTAATTCAAAAGACTCCTCAAAATCAAAAGCgtg aaaatgttatatttttgtttcaggTTCAGCCTTCACTCAACCCACTTATT TCGAGCTCTGCAATTACGACAAATGGCATccttatcaaaaaatatttctg tcACACATGGCAATTTTGAAACACTCCCAAATAAAGTAAAGGATTTTGTC gtacaaaaaagtgaattatgtCAGCCAGATTTTCTCCACATTTGTGATGG CTCAGAAGATGAGGCACAAAGCTTAGCTGATCTTCTTGTAAAAAATGGAA CTgcaagaaaattggaaaaaatggataATTGGTAAGAATGCACTTATGAT TACTATTAACAAAGAATACCTCCACTCACTTTTAACTaaaaaccattttg atttttttaatcaaaattgtcatGATAAAGATTgaatattctttattttt agcTATGCTGTCCGTACTAATCCAGCTGATGTTGCACGTGTTGAATCAAA AACGTTGATCTGTACTGAAAATAAACATGATACTGTCCCCCACACCAAAG ATGGAGTTAGATGTTCAGTTGGACAATGGACTGAGCCTAAAGAAATGAAG GAAAAGCTCCAAGGATTATTCCAAGGATGCATGAAGGGTAAAGATTTGAG ATTTGAAATTATACTTAATACATTGCTCTGATTTGTGAGTGTTTTTTACA TGGTTTTCACATGGTTATGTTTCatctgattttttgtttttattcatgAT CTCTTTTGTATCTTATAGGAAGAACCATGTatgttattccattttcaatg GGACCTGTTGGCTCTCCTTTGTCCAAAATTGGTATTGAACTTACTGATTC TCCATATGTCTCAATGTCTATGGGTGTTATGACTAGAATGGGATCAAAAG TATTGAATTCTCTGGGTGATGGTGATTTTGTCAAATGTTCTCACTCTGTT GGACAACCTTTACCTCTTGAAAAACCAGACCCATATAACTGGCCATGTAA TCCAGAAAAGACTGTTATCACACATTTCCCAGCTGACAGAGAAATCATCT CCTTTGGATCTGGTTATGGTGGAAACTCACTTCttggaaagaaatgtttt gcTTTGAGAATCGCATCTGCTGTTGCTAGAGATGAAGGATGGTTAGCTGA ACACATGCTGGTATGTTCTCATTCCCCTTGAATTCGCAAAGTTAATTTAT TCATGCTATCAAGTGCTATCTATGAAATCTGAAAAGTAACTAATTGGTTT TCATTGTCACCTCTTTTAGATCCTTGGATTGACTAACCCACAAGGTGAAA AGAAATATGTTGCTGCTGCATTTCCAAGTGCTTGTGGAAAGACAAACTTA GCTATGTTAACCCCAACTTTACCAGGATGGAAAGCAGAATGTGTCGGTGA TGATATTGCATGGATGAAATTTGACGAGGAAGGTGTCTTGAGAGCTATTA ATCCAGAATATGGATTCTTTGGTGTTGCCCCCGGAACCTCAATGGAAACC AACCCACAAGCATTAATTGCTTGTCAGAAGAACACTGTCTTTACTAACTG CGCTACTACTGATGATGGTGAAATCTACTGGGAAGGTACAAcaagatcaa atttaatttctcaGACTTCTTCTTGCCCTTTTTTAATTGCTGGAAATGat catcaatttttaaaaatgactGAAGTTCTTAAGCTACACTCTATTAATTT CGCTATCAATGCGCTAATCTGTATTCATGATTCATGAATATTAATTCGat taatttgatgaattttttctcCAGGTCTTGAAAAGGAAGTCAACCTTGAA GGTCGTTCAGTCACTGACTGGTTGGGTAAACCATGGACTAAAGAATCTGG AACAAAAGCTGCTCATCCAAACTCTCGATTCTGTACGCCAGCTGGAAATT GCAAAGTTATCGATCCACTTTGGGAAGATCCTAAAGGTGTCCCAATCTCT GCTATTTTGTTTGGTGGACGCCGACCAGAAGGTGTGCCATTGATCTACGA AGCATTTAATTGGCAACATGGTGTGTTTGTTGCAAGTGCTCTTTGCTCTG AAACGACGGCTGCTGCAGAACACAAAGGCAAAGCTATAATGAGAGATCCC TTCGCCATGAGACCATTCTTTGGATATAACGCTGGACATTACTTTAAACA CTGGCTGAGTCTTGAAGATGATAAGAAACATCAATTGCCTAAAATTTTCC ATGTCAACTGGTTCAGGAAAGGAGAAGACGGCAAATTCCTATGGCCTGGT AAGTCCTTGTTTACATTCTCATGGCTCTCTTTCATTTCATATAGACTTTA CAAATTAANACCAACCCACAAGCATTAATTGCTTGTCAGAAGAACACTGT CTTTACTAACTGCGCTACTACTGATGATGGTGAAATCTACTGGGAAGGTA CGAcaagatcaaatttaatttctcaGACTTCTTCTTGCCCTTTTTTAATT GCTGGAAATGatcatcaatttttaaaaatgactGAAGTTCTTAAGCTACT CTATTCATTTCGCTATCAATGCGCTAATCTGTATTCATGATTCATGAATA TTAATTCGattaatttgatgaattttttctcCAGGTCTTGAAAAGGAAGT CAACCTTGAAGGTCGTTCAGTCACTGACTGGTTGGGTAAACCATGGACTA AAGAATCTGGAACAAAAGCTGCTCATCCAAACTCTCGATTCTGTACGCCA GCTGGAAATTGCAAAGTTATCGATCCACTTTGGGAAGATCCTAAAGGTGT CCCAATCTCTGCTATCTTGTTTGGTGGACGCCGACCAGAAGGTGTGCCAT TGATCTACGAAGCATTTAATTGGCAACATGGTGTGTTTGTTGCAAGTGCT CTTTGCTCTGAAACGACGGCTGCTGCAGAACACAAAGGCAAAGCTATAAT GAGAGATCCCTTCGCCATGAGACCATTCTTTGGATATAACGCTGGACATT ACTTTAAACACTGGTTGAGTCTTGAAGATGATAAGAAACATCAATTGCCT AAAATTTTCCATGTCAACTGGTTCAGAAAAGGAGAAGACGGCAAATTCCT ATGGCCTGGTAAGTCCTTGTTTACATTCTCATGGCTCTCTTTCATTTCAT ATAgacttttcaaattatttgtGAACCTTTCCTCttcattttataaaatt tccTTGAATACCAGTTTGAAAGACTAAAATCTCTCATATTAAAAATGGCA TGCAATCTCAAAGGAGGGATTATAATAGTTTTCTTAGCTGTAGTTTCCAA ACAACCTATAACAATTAcaataattttcatatttcagGATTCGGTGAAAA CTGTCGTGTCTTGAAATGGGTTTTCGATCGCGTCGACGGCAAACACGGAG TCCAAAAATCCACCGTCGGATATTTACCTGAAAATGACGCATTAGACTTA AATGGACTAGATGAAGATTTAAATATGAAAGAACTAATGTCTGTTCCCAC TGACTATTGGATGGAACAACTAGATGATATtgagaaatattataatcaac AATTTGGTGAAGATATTCCACAACAATTATGGGATGAAGTACATTCTTTC AGGGAACGATTGACAAAATCTCCTACCGCCGCTTAAATGTGTTATTTATT GGAAGATGATGATTGTTGTTGATGCTTTTTGTCCTTTTTAACcttatatt tagaatttttcctACACCatttctgaaaaatgaaaaacaatttttatgat GTTGTAGTCACAATCGGACTTGTcattttcttcttattttcCTCATTTTA CTGAGTTGGAATTGTCAATAAGTGTaaaatgattttacttttttatttag tgatcGTAAAACAAAATTACACTAAGAAAGCTAAGCTATGCACGTTGCTA ATATACAATANtttacttttttatttagtgatcGTAAAACAAAATTACAC TAAGAAAGCTAAGCTATACACGTTGCTAATATACAATAGTATAGTAAAGA ggacttttttagttttagggacttgatttctttttaaagtgtttgttcgt tttctttttgttaACAGAATTTTTTAATTGTTCAGCTGTatttaaaaatg ctattttatgtctttgttttattttgttatatctttatttttcagctttc ttttggtACAATATACAGTCTTTTTTTTCGTTTATCTGTCACGGTATTAT TTTTGTTTGGCTAGAGAGATATTTATaagaaatattaaaatttaaatatt atTATCATGTGATAGtttaacatttttgtaaacttcAAGTTTATAAGGGA GAATAATTTTTTGTTACTTTGTATCATCTTATTTTAATGCTAGagtttat atttgttttgtaATATTGACGTTTTTGAAGTCAGTAAAATACAacgtttt cgaaaaaaaatcaacattgcTGCACGGTTTTATACCCCCTAATGAATCGT TCAATTTTTTATTAATATTTGCAGAATCaagatttcaatgtttttttcct tttactCTTTTCATCAGACGAATTgataagaaattaaatttttgcgttta agagagaaaaaaaacaaatagccAGAAAAAACATAGTCAGCGAAGATTTT TACCTGATTTCAATATCTCGCCGCTGGCTCACCATAGGATAACGATGGAT GGCCTCACAATATTATTTcaaactaaagtctgttccaaaaatgACAGTCA GCACATTTTGATACATTGTCCTTGAAGGTGTAGAGATAAATTAATATACT GCTAGAAATATCGTTTTGAGTGGATTTCCacctttttaaaactttggaaC TTccctgatttcaaatatgtattcgga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045230XLOC_045230Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072885-exon-scaffold_86-1491911889:541365..541509TCONS_00072885-exon-scaffold_86-1491911889:541365..541509Clytia hemisphaericaexon
TCONS_00072885-exon-scaffold_86-1510915933:541365..541509TCONS_00072885-exon-scaffold_86-1510915933:541365..541509Clytia hemisphaericaexon
TCONS_00072885-exon-scaffold_86-1575043694:541365..541509TCONS_00072885-exon-scaffold_86-1575043694:541365..541509Clytia hemisphaericaexon
TCONS_00072885-exon-scaffold_86-1491911889:547538..547795TCONS_00072885-exon-scaffold_86-1491911889:547538..547795Clytia hemisphaericaexon
TCONS_00072885-exon-scaffold_86-1510915933:547538..547795TCONS_00072885-exon-scaffold_86-1510915933:547538..547795Clytia hemisphaericaexon
TCONS_00072885-exon-scaffold_86-1575043694:547538..547795TCONS_00072885-exon-scaffold_86-1575043694:547538..547795Clytia hemisphaericaexon
TCONS_00072885-exon-scaffold_86-1491911889:547917..548101TCONS_00072885-exon-scaffold_86-1491911889:547917..548101Clytia hemisphaericaexon
TCONS_00072885-exon-scaffold_86-1510915933:547917..548101TCONS_00072885-exon-scaffold_86-1510915933:547917..548101Clytia hemisphaericaexon
TCONS_00072885-exon-scaffold_86-1575043694:547917..548101TCONS_00072885-exon-scaffold_86-1575043694:547917..548101Clytia hemisphaericaexon
TCONS_00072885-exon-scaffold_86-1491911889:548233..548624TCONS_00072885-exon-scaffold_86-1491911889:548233..548624Clytia hemisphaericaexon
TCONS_00072885-exon-scaffold_86-1510915933:548233..548624TCONS_00072885-exon-scaffold_86-1510915933:548233..548624Clytia hemisphaericaexon
TCONS_00072885-exon-scaffold_86-1575043694:548233..548624TCONS_00072885-exon-scaffold_86-1575043694:548233..548624Clytia hemisphaericaexon
TCONS_00072885-exon-scaffold_86-1491911889:548734..549049TCONS_00072885-exon-scaffold_86-1491911889:548734..549049Clytia hemisphaericaexon
TCONS_00072885-exon-scaffold_86-1510915933:548734..549049TCONS_00072885-exon-scaffold_86-1510915933:548734..549049Clytia hemisphaericaexon
TCONS_00072885-exon-scaffold_86-1575043694:548734..549049TCONS_00072885-exon-scaffold_86-1575043694:548734..549049Clytia hemisphaericaexon
TCONS_00072885-exon-scaffold_86-1491911889:549239..549712TCONS_00072885-exon-scaffold_86-1491911889:549239..549712Clytia hemisphaericaexon
TCONS_00072885-exon-scaffold_86-1510915933:549239..549712TCONS_00072885-exon-scaffold_86-1510915933:549239..549712Clytia hemisphaericaexon
TCONS_00072885-exon-scaffold_86-1575043694:549239..549712TCONS_00072885-exon-scaffold_86-1575043694:549239..549712Clytia hemisphaericaexon
TCONS_00072885-exon-scaffold_86-1491911889:550752..552241TCONS_00072885-exon-scaffold_86-1491911889:550752..552241Clytia hemisphaericaexon
TCONS_00072885-exon-scaffold_86-1510915933:550752..552241TCONS_00072885-exon-scaffold_86-1510915933:550752..552241Clytia hemisphaericaexon
TCONS_00072885-exon-scaffold_86-1575043694:550752..552241TCONS_00072885-exon-scaffold_86-1575043694:550752..552241Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:541365..552241 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.688287 0 1.60313 3.35961 19.4577 59.2432 94.2738 63.8676 3.85182 13.9164 8.16956 1.9875 0.198483 0 0.826491 1.2212 0.604703 5.44972e-09 2.20346e-10 0 3.02471 10.2954 6.91913e-07 2.46829 0.565388 1.81949e-10
Blast
BLAST of TCONS_00072885 vs. Swiss-Prot (Human)
Match: PCKGC (Phosphoenolpyruvate carboxykinase, cytosolic [GTP] OS=Homo sapiens GN=PCK1 PE=1 SV=3)

HSP 1 Score: 816.994 bits (2109), Expect = 0.000e+0
Identity = 377/616 (61.20%), Postives = 474/616 (76.95%), Query Frame = 3
Query:  204 LSKNISVTHGNFETLPNKVKDFVVQKSELCQPDFLHICDGSEDEAQSLADLLVKNGTARKLEKMDNCYAVRTNPADVARVESKTLICTENKHDTVPHTKDGVRCSVGQWTEPKEMKEKLQGLFQGCMKGRTMYVIPFSMGPVGSPLSKIGIELTDSPYVSMSMGVMTRMGSKVLNSLGDGDFVKCSHSVGQPLPLEKPDPYNWPCNPEKTVITHFPADREIISFGSGYGGNSLLGKKCFALRIASAVARDEGWLAEHMLILGLTNPQGEKKYVAAAFPSACGKTNLAMLTPTLPGWKAECVGDDIAWMKFDEEGVLRAINPEYGFFGVAPGTSMETNPQALIACQKNTVFTNCATTDDGEIYWEGLEKEVNLEGRSVTDWLGKPWTKESGTKAAHPNSRFCTPAGNCKVIDPLWEDPKGVPISAILFGGRRPEGVPLIYEAFNWQHGVFVASALCSETTAAAEHKGKAIMRDPFAMRPFFGYNAGHYFKHWLSLEDDKKHQLPKIFHVNWFRKGEDGKFLWPGFGENCRVLKWVFDRVDGKHGVQKSTVGYLPENDALDLNGLDEDLNMKELMSVPTDYWMEQLDDIEKYYNQQFGEDIPQQLWDEVHSFRERLTK 2051
            L+ +  V  G+ ++LP  V++F+   +ELCQPD +HICDGSE+E   L   + + G  R+L+K DNC+   T+P DVAR+ESKT+I T+ + DTVP  K G+   +G+W   ++ ++     F GCMKGRTMYVIPFSMGP+GSPLSKIGIELTDSPYV  SM +MTRMG+ VL ++GDG+FVKC HSVG PLPL+KP   NWPCNPE T+I H P  REIISFGSGYGGNSLLGKKCFALR+AS +A++EGWLAEHMLILG+TNP+GEKKY+AAAFPSACGKTNLAM+ P+LPGWK ECVGDDIAWMKFD +G LRAINPE GFFGVAPGTS++TNP A+   QKNT+FTN A T DG +YWEG+++ +   G ++T W  K W+ E G   AHPNSRFCTPA  C +ID  WE P+GVPI  I+FGGRRP GVPL+YEA +WQHGVFV +A+ SE TAAAEHKGK IM DPFAMRPFFGYN G Y  HWLS+      +LPKIFHVNWFRK ++GKFLWPGFGEN RVL+W+F+R+DGK   + + +GY+P+ DAL+L GL   +NM EL S+  ++W ++++DIEKY   Q   D+P ++  E+ + ++R+++
Sbjct:    9 LNLSAKVVQGSLDSLPQAVREFLENNAELCQPDHIHICDGSEEENGRLLGQMEEEGILRRLKKYDNCWLALTDPRDVARIESKTVIVTQEQRDTVPIPKTGL-SQLGRWMSEEDFEKAFNARFPGCMKGRTMYVIPFSMGPLGSPLSKIGIELTDSPYVVASMRIMTRMGTPVLEAVGDGEFVKCLHSVGCPLPLQKPLVNNWPCNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALRMASRLAKEEGWLAEHMLILGITNPEGEKKYLAAAFPSACGKTNLAMMNPSLPGWKVECVGDDIAWMKFDAQGHLRAINPENGFFGVAPGTSVKTNPNAIKTIQKNTIFTNVAETSDGGVYWEGIDEPL-ASGVTITSWKNKEWSSEDGEPCAHPNSRFCTPASQCPIIDAAWESPEGVPIEGIIFGGRRPAGVPLVYEALSWQHGVFVGAAMRSEATAAAEHKGKIIMHDPFAMRPFFGYNFGKYLAHWLSMAQHPAAKLPKIFHVNWFRKDKEGKFLWPGFGENSRVLEWMFNRIDGKASTKLTPIGYIPKEDALNLKGLGH-INMMELFSISKEFWEKEVEDIEKYLEDQVNADLPCEIEREILALKQRISQ 621          
The following BLAST results are available for this feature:
BLAST of TCONS_00072885 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PCKGC0.000e+061.20Phosphoenolpyruvate carboxykinase, cytosolic [GTP]... [more]
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