TCONS_00072885 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072885
Unique NameTCONS_00072885
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3260

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072885 ID=TCONS_00072885|Name=TCONS_00072885|organism=Clytia hemisphaerica|type=transcript|length=3260bp
CTTGGAGAGCTATATAAATGAGGAGCTACTGGTTTCTCCAAGTATTATTA
TAtaatcatttttgaagtttGTTCAAACTTGTCgtttttaaacgaagaaa
tTTAACAAGCACCacaaaaaagactttgaaatcaAGAAAACTAAAgTTCA
GCCTTCACTCAACCCACTTATTTCGAGCTCTGCAATTACGACAAATGGCA
TccttatcaaaaaatatttctgtcACACATGGCAATTTTGAAACACTCCC
AAATAAAGTAAAGGATTTTGTCgtacaaaaaagtgaattatgtCAGCCAG
ATTTTCTCCACATTTGTGATGGCTCAGAAGATGAGGCACAAAGCTTAGCT
GATCTTCTTGTAAAAAATGGAACTgcaagaaaattggaaaaaatggataA
TTGcTATGCTGTCCGTACTAATCCAGCTGATGTTGCACGTGTTGAATCAA
AAACGTTGATCTGTACTGAAAATAAACATGATACTGTCCCCCACACCAAA
GATGGAGTTAGATGTTCAGTTGGACAATGGACTGAGCCTAAAGAAATGAA
GGAAAAGCTCCAAGGATTATTCCAAGGATGCATGAAGGGAAGAACCATGT
atgttattccattttcaatgGGACCTGTTGGCTCTCCTTTGTCCAAAATT
GGTATTGAACTTACTGATTCTCCATATGTCTCAATGTCTATGGGTGTTAT
GACTAGAATGGGATCAAAAGTATTGAATTCTCTGGGTGATGGTGATTTTG
TCAAATGTTCTCACTCTGTTGGACAACCTTTACCTCTTGAAAAACCAGAC
CCATATAACTGGCCATGTAATCCAGAAAAGACTGTTATCACACATTTCCC
AGCTGACAGAGAAATCATCTCCTTTGGATCTGGTTATGGTGGAAACTCAC
TTCttggaaagaaatgttttgcTTTGAGAATCGCATCTGCTGTTGCTAGA
GATGAAGGATGGTTAGCTGAACACATGCTGATCCTTGGATTGACTAACCC
ACAAGGTGAAAAGAAATATGTTGCTGCTGCATTTCCAAGTGCTTGTGGAA
AGACAAACTTAGCTATGTTAACCCCAACTTTACCAGGATGGAAAGCAGAA
TGTGTCGGTGATGATATTGCATGGATGAAATTTGACGAGGAAGGTGTCTT
GAGAGCTATTAATCCAGAATATGGATTCTTTGGTGTTGCCCCCGGAACCT
CAATGGAAACCAACCCACAAGCATTAATTGCTTGTCAGAAGAACACTGTC
TTTACTAACTGCGCTACTACTGATGATGGTGAAATCTACTGGGAAGGTCT
TGAAAAGGAAGTCAACCTTGAAGGTCGTTCAGTCACTGACTGGTTGGGTA
AACCATGGACTAAAGAATCTGGAACAAAAGCTGCTCATCCAAACTCTCGA
TTCTGTACGCCAGCTGGAAATTGCAAAGTTATCGATCCACTTTGGGAAGA
TCCTAAAGGTGTCCCAATCTCTGCTATTTTGTTTGGTGGACGCCGACCAG
AAGGTGTGCCATTGATCTACGAAGCATTTAATTGGCAACATGGTGTGTTT
GTTGCAAGTGCTCTTTGCTCTGAAACGACGGCTGCTGCAGAACACAAAGG
CAAAGCTATAATGAGAGATCCCTTCGCCATGAGACCATTCTTTGGATATA
ACGCTGGACATTACTTTAAACACTGGCTGAGTCTTGAAGATGATAAGAAA
CATCAATTGCCTAAAATTTTCCATGTCAACTGGTTCAGGAAAGGAGAAGA
CGGCAAATTCCTATGGCCTGGATTCGGTGAAAACTGTCGTGTCTTGAAAT
GGGTTTTCGATCGCGTCGACGGCAAACACGGAGTCCAAAAATCCACCGTC
GGATATTTACCTGAAAATGACGCATTAGACTTAAATGGACTAGATGAAGA
TTTAAATATGAAAGAACTAATGTCTGTTCCCACTGACTATTGGATGGAAC
AACTAGATGATATtgagaaatattataatcaacAATTTGGTGAAGATATT
CCACAACAATTATGGGATGAAGTACATTCTTTCAGGGAACGATTGACAAA
ATCTCCTACCGCCGCTTAAATGTGTTATTTATTGGAAGATGATGATTGTT
GTTGATGCTTTTTGTCCTTTTTAACcttatatttagaatttttcctACAC
CatttctgaaaaatgaaaaacaatttttatgatGTTGTAGTCACAATCGG
ACTTGTcattttcttcttattttcCTCATTTTACTGAGTTGGAATTGTCA
ATAAGTGTaaaatgattttacttttttatttagtgatcGTAAAACAAAAT
TACACTAAGAAAGCTAAGCTATGCACGTTGCTAATATACAATANtttact
tttttatttagtgatcGTAAAACAAAATTACACTAAGAAAGCTAAGCTAT
ACACGTTGCTAATATACAATAGTATAGTAAAGAggacttttttagtttta
gggacttgatttctttttaaagtgtttgttcgttttctttttgttaACAG
AATTTTTTAATTGTTCAGCTGTatttaaaaatgctattttatgtctttgt
tttattttgttatatctttatttttcagctttcttttggtACAATATACA
GTCTTTTTTTTCGTTTATCTGTCACGGTATTATTTTTGTTTGGCTAGAGA
GATATTTATaagaaatattaaaatttaaatattatTATCATGTGATAGtt
taacatttttgtaaacttcAAGTTTATAAGGGAGAATAATTTTTTGTTAC
TTTGTATCATCTTATTTTAATGCTAGagtttatatttgttttgtaATATT
GACGTTTTTGAAGTCAGTAAAATACAacgttttcgaaaaaaaatcaacat
tgcTGCACGGTTTTATACCCCCTAATGAATCGTTCAATTTTTTATTAATA
TTTGCAGAATCaagatttcaatgtttttttccttttactCTTTTCATCAG
ACGAATTgataagaaattaaatttttgcgtttaagagagaaaaaaaacaa
atagccAGAAAAAACATAGTCAGCGAAGATTTTTACCTGATTTCAATATC
TCGCCGCTGGCTCACCATAGGATAACGATGGATGGCCTCACAATATTATT
TcaaactaaagtctgttccaaaaatgACAGTCAGCACATTTTGATACATT
GTCCTTGAAGGTGTAGAGATAAATTAATATACTGCTAGAAATATCGTTTT
GAGTGGATTTCCacctttttaaaactttggaaCTTccctgatttcaaata
tgtattcgga
Run BLAST on NCBI

transcript from alignment at scaffold_86:541365..552241+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072885 ID=TCONS_00072885|Name=TCONS_00072885|organism=Clytia hemisphaerica|type=transcript|length=10877bp|location=Sequence derived from alignment at scaffold_86:541365..552241+ (Clytia hemisphaerica)
CTTGGAGAGCTATATAAATGAGGAGCTACTGGTTTCTCCAAGTATTATTA
TAtaatcatttttgaagtttGTTCAAACTTGTCgtttttaaacgaagaaa
tTTAACAAGCACCacaaaaaagactttgaaatcaAGAAAACTAAAGTAAG
TCCATCATCTACTTTACGATTTGAGTACtaattaaagggataatcagatg
gtttgagatatttggcatgtgggatCCTTCTATTGCCCTGAGCAAAACCT
CAATATTTTCAAGTCCAGATATTTAAATTACAAGCTTTTGACTTTTagta
agaaaacaatagaatttcaacgtaagaaccgtgtgagaacccattttcag
aaattttaaattttgatatctcgACTTTAGAATATAGTTAGACAAAAATA
CTTggtgattttattcaaaatcaCATAGGGTTTTAAAggcaaaaaatctc
aaaccatctgattatccctttaaaatttttattctaatGGGTAAGTTGTT
TAATATGTGTGCAACTGTACTTTCAGGACAGTTTGTTCTTTACCTTGTTA
AATGTGAGTCAATTAGAAATTAGAAAGTTGTGATAAAATACCTAGTATTA
AAAAGACTTTGGTCCTTATttgcaaaaactattttttaagtaaaaagtaa
aacttgacaagcttttaatttttaatcatttaGATTTAATAAGATCAGTA
CATCCGAAAGAAGCTAGTCTTTGAAACTAGTTTAACTTACTTTCTAAAAA
CTGTCATAAGATGAAATTAcacaatttttagaaaatatttatacAACACA
TGATATTTATAATCTTCCATTATTTGAGAGggattttaaatttcgaaact
ttGACCTGTCAGACATGTAAGCATTGCTCAAGAGAGgaatttaaagtcct
ttgataCACGTGGTTTAGAGATTTTATcctaaaatttgaaagaaaaacat
atcTGAAAGATAaaggttttgagaaaaattatagcattccATCGTGACGT
CATGACTTTTATAAAAGGCAAGCTAGAAACAGAGCTGAGATACAGTTAAA
TAACAGTCAACCGTTTTTAGCAACCTTGCACAAGAACCTAAACAACTTTA
AAGGTAAGATTTGATGTAATTATTTTGCTAGATGGTACGTATAAGTAATA
GTGAGATATCAAAGTTTAAGTAGATAAAGAAAGAAAGTTGTGTAATTTTC
GTAAGTTATCTAGAGCTAAAAACAAGTCTTCTtgggaaaaattaaatact
aTTGGATAAAAAATACAACGcaaaaatttttccattttatcATGCTTCAG
TGGGCAAAACCTAAAAtaataagaaatacttcttcttTTTATGGAACCCC
AAAAATTCCAGGAAAATTGCACGAATTCCAAAATCAGTATTCAAAGCAAA
GGTTTCATTGTCACATAGAAGCCCAGTTTCGATGAACTTTGCAGAATTCT
ACCAGCATCTAGCACAGTAATCCATCTTAAACTGAAAATCTTGTGTGTAC
TGCGCTTTAGCTTGTTCCAGCTTACCTTTTGAAAAGTTCTTTGAAAAAGA
TAACtagatatttcaaattttcaaatatgcTTAGGGAAGAGGAAAATTTG
AGGAAATTCAAAGGTACACAATTTTTCCTggaaaagttaaaaaacataCA
GAAAATTCTTCTAGAAAAATAGCAGGATAGCCGTATTTATCATTATCATT
CCCTGATTCAACTTAATCCCTTCAGAAAACTGTCAACAAAAATATTGTAT
GCATGGGTTCTCTGAAAAGATTTCTTTATAACTTCAGCCATAAAAAATCT
ACAGGTTGGCATGATCCCATGAAATTTATTCTTGTCtctctatttttctt
tgccTTGCTTTTGCTTTGCCTTTGCCTGCTTATTATTAATTGCATTTTTT
AATAATTCTAGATCAATTAgataatttaaaaaagtataACTTTCTGCCTC
CTGACAAATTGCAGGGTACAAATTCCTGTAAATTCCAATTTTCACACATT
GAGCAAGACTCAGACACACTGGGTCCAGAAAGCTAAGCTTTATAAATAGG
AAAATGAGGGACACAAAAAGGTActtttgattatattttgattCTGAAGT
CTTTCCTATAACTGGATCATGTTAAAACTATGATAAACCATTGAtgcttt
tcagaatttttcatgtaaattgaaaattttactttgaaaaattcaggcaa
actttcaactaaaacCAAAAGTGTCATTTAGAAATTGAATCATATTCAGA
ATGGGCAAATTGGGCATGAAAAATCCAGgcaaactttcaactaaaacCAA
AAGTGTCATTTAGAAATTGAATCATATTCAGAATGGGCTTTTGTAGTGGC
TTGAAGTGGCTttagttttcaaaatatatattgTTGAGTATGTGACTTTA
CTATATGATTAATGAGATTGGATATTTTTGCTGGAGGTTAacttgttttt
ttaaatcaaaaaatttccatggaaaatcttatttttagtttgcttttact
tacttttgatacttttgatggGTTTTTAGAGTCTCTCAATCATTCCATTT
GGATTTTAGATGCCCAAAAAtacatttcattattttccctTTAGATTTAG
GACATAATGTCACTGGAGATATTATGCAAAAAGAACTGATTCAAAAGCTT
ATTTACCATGAAATCAAAATCTTGTCCAAATCAAGAATATATTTTACAGA
CAATCGCTAGACATTTGTGACACTTTGTAAACTTGTTTGAATGTGCACTT
TTAAACTCGGTGTGCAGACGCTTAGTTATAAGTTATATGAAACACATTAA
GATATTGATCTACTAGGCTATCTACTATGGAATTTGGAgtaccaaatttt
caaaaagattttgataaTTCAATCACTTTTTTAACAACCCTTCGAAGACT
CAATAACCGTAcatactttgattgttattaaTTAATTTCGATAAACTCAA
CACAACCAATTGATTACTTCTATAACTATTGATtacttaaagtctgtctc
aatataatttgacaaaaaaggctataacttttgatagaattcaaatTAGA
TAgcagttttgtgcttgttgagaagacaaacaggagtggaacattatcat
aaagaaaaaattcaaaaaagattgaaaaacaaagatggaaatgaagaaga
agaaaatcaacttcttcaataattgtgcttataattatcattttcacacg
agtgattcTTTGACCTTAGAGCATCATTAATGTGAAaaacaatcttcaaa
aaaatttattttatccaaagatatagtccaaagtttgtcactgattgact
tcaaaaaccatcaaaaacaaacaaaaaagagcccttttttaagtcaacca
gcgacaaagttttaagctgtattttttgactgaagcaatattttgtgatt
ttatttCGTATATCTATGATGTtctaaagattaaagaatttttaatatga
aaatgaaaatcatagcattattcaacaagaagttgattttctactatctt
atttttcatctttgtttttcaatttttttaatttttttcttttttgacag
tttACAGTAGTGGAAGTACCTCGATTTTAAGCATGTTCAaaaagttcaca
ataacgactttctttttataacggAAACCAAACGAGTAAGAAAAAGTCAA
GCAACTAAATCTCAGCGCTCCGTGGTTGTGACGtagtttacaaaattgtt
aagatataatgacatactttttaacaacttttttctatgtcatttttgaa
gcctcttcGTAGGAGAATTTTATtacacttcatggcagattaaaaagacg
attagaaaacgaaagcttcttcatttttcatttttgcatttaaggggaag
aatgaaattttcagaagattatttatttgatatgaggattcccatttccg
taaaATTGCAATTCCTCATGGTTGTGAAATGgtggctatgggtaattcct
ttgttcttttgccaTTTTCATTTGTTCTATGTGACGTAAAGATGCTTCAC
AAATCAAAGTATTTCCACTAACTGTTTGATAATATTCAACTCtgaaatat
ctttttaatgagCACAAAACCAATATCTATCAGAAGTTATAGCCTTGGTT
GTCTCTATTGCAAATTATGTTGAGACAAACTTTagataaccaattgatta
cATATATAGTATAGATgtctttaagaaaaaccaaaaacattgacctTAAA
ACCAAAGCACAATAAGAAGCAGCAGCAGCCATAAGAATAACCTTCAGTAA
TTACCCCACCATTTTGTGTGGGTTTCCCGAAGTAACTCATATCGTGCATT
CTGATTGATCGGAGAAAAACAAAGTGGTTTTCGCGCGTGATTTTTATTAA
AGAAGAATATGTTGAAATTAGAAagagatgtcgacattagaccaacttac
agtaattaattagttattcaaaagacgaAAGACCGTCATGTTCCTTTATT
TATATGCTAATGACAAATGAACAGCATGGCAGTGCTTGGAACCAAAACTG
TTGATAAGAATCTGCCAAAccaaacaatcaaaacaaaacacccCCACCAC
CCACAGTCcactttgaaaacaaaatttaaaaattgaatagaaaaccTTTT
TCATCTTTGTGCCAGTAAGtccagtgaaaaaaaattttgtttctaaaaat
gAACTCACAGCTCTCTAAAAATATTATctgttaaaagtaaaaaaaggaCG
GTGTGTAGTTATAGTTGGTAGAGTTATTTCCTCTCTTCTCTAACTAATAA
TTCTCACTGAACTAAATTTCCTTACATTTAGTGGTGTTGTTTGCTGTTCA
TTCATTACACATCCCTTACACTATATAAAGAggtttttaaaatctgaaac
attaaaaattttgttaagattttgactttttttgatgtTGATGTCGCTAT
CAAAGATGGCGGGTTTCCCGCCagaaattgtaaacaaaaactaGCCTGTG
AAACCTATTCCGGTCCTTGAAATATCACAGGAATAGAATTTTGGTTCggt
aaaataaatcaaaagaatttgataatGAGATTTCCTGATTTCATGAATGT
GCAAAGTTGCCCAGGGAATTTGATAAGCACGTTGCACTCAGTGGCTGGAG
AAGGCGACACAAAAATCactttaaactaaaattgctcGAGGTTTTAAAGT
ACAACAAAAATGGCACCATATGCTAAGCTACTCACAAGGTATACAATTTT
TGTTTACACCAAATTTCTcggaatttttttgcaaaatgaagtcattgcaa
agcaatttaaaaaaataaattttactcGACTGTTCGATTCGATGAATTTG
AGGCTTTTGTAGTTTTTATTCCTTGACTCTCATGGACATAGATCAGCATG
ATTTGTTTATAGAACAAGGTATATTGTTTTGTTTGCAGTATAGTtgttaa
aaaagttttgtttgttttggctTATGACATTGTTTTTATTACAAACTTTC
GaccttttgttcttatttattttGTGTTGATGGGACTTTTTATAGCAgta
tttgactgaaatttgaaaCCTTTTATAAAGCACTCAATGCCTTTTTACTT
CCGCGTCTATAACAAGTTTTTAGATAGATTTATCTATTTTTGTGAGTTTT
GGACGCATTCAACCGAAAATATAgaaacatttttagatttcttacTCCTA
AACTAAATTATTCATGATCAATACAAGAGTTTCCAATCCCTATACAAATG
ACCTCTTTTCAATCTCTAAGCTATGATTCCTATAATATTTCTTGACTTCA
TTCATCCCGTTTAAGGATTTGAATATGTCTTTTAAatacaaaatttagaa
atgtaAAAATGGCTTTACAATTAATGATAGGAACTTATCAGTTAGATTTA
AATAGTTTTTAAAGATTAATGTCTTgcattaagaagattaaaagaCATTT
AAGAGTTTCTATTGCTCAAAACAGTTAGACTCACACCTTAATTTAAACCC
TATTGTCAAGACACAAAAATTGAAATGCTAGAATTCTAAGTACCTTATAA
CCAACCTATatgtaaaatagaaaatgaaccACTGAACTGACTTggatatt
ttttaattcaagggTTTATTTTATAGATAAACTTGGCACTACATTAGACA
TTCCCATACTTTCCCATTAATTCAAAAGACTCCTCAAAATCAAAAGCgtg
aaaatgttatatttttgtttcaggTTCAGCCTTCACTCAACCCACTTATT
TCGAGCTCTGCAATTACGACAAATGGCATccttatcaaaaaatatttctg
tcACACATGGCAATTTTGAAACACTCCCAAATAAAGTAAAGGATTTTGTC
gtacaaaaaagtgaattatgtCAGCCAGATTTTCTCCACATTTGTGATGG
CTCAGAAGATGAGGCACAAAGCTTAGCTGATCTTCTTGTAAAAAATGGAA
CTgcaagaaaattggaaaaaatggataATTGGTAAGAATGCACTTATGAT
TACTATTAACAAAGAATACCTCCACTCACTTTTAACTaaaaaccattttg
atttttttaatcaaaattgtcatGATAAAGATTgaatattctttattttt
agcTATGCTGTCCGTACTAATCCAGCTGATGTTGCACGTGTTGAATCAAA
AACGTTGATCTGTACTGAAAATAAACATGATACTGTCCCCCACACCAAAG
ATGGAGTTAGATGTTCAGTTGGACAATGGACTGAGCCTAAAGAAATGAAG
GAAAAGCTCCAAGGATTATTCCAAGGATGCATGAAGGGTAAAGATTTGAG
ATTTGAAATTATACTTAATACATTGCTCTGATTTGTGAGTGTTTTTTACA
TGGTTTTCACATGGTTATGTTTCatctgattttttgtttttattcatgAT
CTCTTTTGTATCTTATAGGAAGAACCATGTatgttattccattttcaatg
GGACCTGTTGGCTCTCCTTTGTCCAAAATTGGTATTGAACTTACTGATTC
TCCATATGTCTCAATGTCTATGGGTGTTATGACTAGAATGGGATCAAAAG
TATTGAATTCTCTGGGTGATGGTGATTTTGTCAAATGTTCTCACTCTGTT
GGACAACCTTTACCTCTTGAAAAACCAGACCCATATAACTGGCCATGTAA
TCCAGAAAAGACTGTTATCACACATTTCCCAGCTGACAGAGAAATCATCT
CCTTTGGATCTGGTTATGGTGGAAACTCACTTCttggaaagaaatgtttt
gcTTTGAGAATCGCATCTGCTGTTGCTAGAGATGAAGGATGGTTAGCTGA
ACACATGCTGGTATGTTCTCATTCCCCTTGAATTCGCAAAGTTAATTTAT
TCATGCTATCAAGTGCTATCTATGAAATCTGAAAAGTAACTAATTGGTTT
TCATTGTCACCTCTTTTAGATCCTTGGATTGACTAACCCACAAGGTGAAA
AGAAATATGTTGCTGCTGCATTTCCAAGTGCTTGTGGAAAGACAAACTTA
GCTATGTTAACCCCAACTTTACCAGGATGGAAAGCAGAATGTGTCGGTGA
TGATATTGCATGGATGAAATTTGACGAGGAAGGTGTCTTGAGAGCTATTA
ATCCAGAATATGGATTCTTTGGTGTTGCCCCCGGAACCTCAATGGAAACC
AACCCACAAGCATTAATTGCTTGTCAGAAGAACACTGTCTTTACTAACTG
CGCTACTACTGATGATGGTGAAATCTACTGGGAAGGTACAAcaagatcaa
atttaatttctcaGACTTCTTCTTGCCCTTTTTTAATTGCTGGAAATGat
catcaatttttaaaaatgactGAAGTTCTTAAGCTACACTCTATTAATTT
CGCTATCAATGCGCTAATCTGTATTCATGATTCATGAATATTAATTCGat
taatttgatgaattttttctcCAGGTCTTGAAAAGGAAGTCAACCTTGAA
GGTCGTTCAGTCACTGACTGGTTGGGTAAACCATGGACTAAAGAATCTGG
AACAAAAGCTGCTCATCCAAACTCTCGATTCTGTACGCCAGCTGGAAATT
GCAAAGTTATCGATCCACTTTGGGAAGATCCTAAAGGTGTCCCAATCTCT
GCTATTTTGTTTGGTGGACGCCGACCAGAAGGTGTGCCATTGATCTACGA
AGCATTTAATTGGCAACATGGTGTGTTTGTTGCAAGTGCTCTTTGCTCTG
AAACGACGGCTGCTGCAGAACACAAAGGCAAAGCTATAATGAGAGATCCC
TTCGCCATGAGACCATTCTTTGGATATAACGCTGGACATTACTTTAAACA
CTGGCTGAGTCTTGAAGATGATAAGAAACATCAATTGCCTAAAATTTTCC
ATGTCAACTGGTTCAGGAAAGGAGAAGACGGCAAATTCCTATGGCCTGGT
AAGTCCTTGTTTACATTCTCATGGCTCTCTTTCATTTCATATAGACTTTA
CAAATTAANACCAACCCACAAGCATTAATTGCTTGTCAGAAGAACACTGT
CTTTACTAACTGCGCTACTACTGATGATGGTGAAATCTACTGGGAAGGTA
CGAcaagatcaaatttaatttctcaGACTTCTTCTTGCCCTTTTTTAATT
GCTGGAAATGatcatcaatttttaaaaatgactGAAGTTCTTAAGCTACT
CTATTCATTTCGCTATCAATGCGCTAATCTGTATTCATGATTCATGAATA
TTAATTCGattaatttgatgaattttttctcCAGGTCTTGAAAAGGAAGT
CAACCTTGAAGGTCGTTCAGTCACTGACTGGTTGGGTAAACCATGGACTA
AAGAATCTGGAACAAAAGCTGCTCATCCAAACTCTCGATTCTGTACGCCA
GCTGGAAATTGCAAAGTTATCGATCCACTTTGGGAAGATCCTAAAGGTGT
CCCAATCTCTGCTATCTTGTTTGGTGGACGCCGACCAGAAGGTGTGCCAT
TGATCTACGAAGCATTTAATTGGCAACATGGTGTGTTTGTTGCAAGTGCT
CTTTGCTCTGAAACGACGGCTGCTGCAGAACACAAAGGCAAAGCTATAAT
GAGAGATCCCTTCGCCATGAGACCATTCTTTGGATATAACGCTGGACATT
ACTTTAAACACTGGTTGAGTCTTGAAGATGATAAGAAACATCAATTGCCT
AAAATTTTCCATGTCAACTGGTTCAGAAAAGGAGAAGACGGCAAATTCCT
ATGGCCTGGTAAGTCCTTGTTTACATTCTCATGGCTCTCTTTCATTTCAT
ATAgacttttcaaattatttgtGAACCTTTCCTCttcattttataaaatt
tccTTGAATACCAGTTTGAAAGACTAAAATCTCTCATATTAAAAATGGCA
TGCAATCTCAAAGGAGGGATTATAATAGTTTTCTTAGCTGTAGTTTCCAA
ACAACCTATAACAATTAcaataattttcatatttcagGATTCGGTGAAAA
CTGTCGTGTCTTGAAATGGGTTTTCGATCGCGTCGACGGCAAACACGGAG
TCCAAAAATCCACCGTCGGATATTTACCTGAAAATGACGCATTAGACTTA
AATGGACTAGATGAAGATTTAAATATGAAAGAACTAATGTCTGTTCCCAC
TGACTATTGGATGGAACAACTAGATGATATtgagaaatattataatcaac
AATTTGGTGAAGATATTCCACAACAATTATGGGATGAAGTACATTCTTTC
AGGGAACGATTGACAAAATCTCCTACCGCCGCTTAAATGTGTTATTTATT
GGAAGATGATGATTGTTGTTGATGCTTTTTGTCCTTTTTAACcttatatt
tagaatttttcctACACCatttctgaaaaatgaaaaacaatttttatgat
GTTGTAGTCACAATCGGACTTGTcattttcttcttattttcCTCATTTTA
CTGAGTTGGAATTGTCAATAAGTGTaaaatgattttacttttttatttag
tgatcGTAAAACAAAATTACACTAAGAAAGCTAAGCTATGCACGTTGCTA
ATATACAATANtttacttttttatttagtgatcGTAAAACAAAATTACAC
TAAGAAAGCTAAGCTATACACGTTGCTAATATACAATAGTATAGTAAAGA
ggacttttttagttttagggacttgatttctttttaaagtgtttgttcgt
tttctttttgttaACAGAATTTTTTAATTGTTCAGCTGTatttaaaaatg
ctattttatgtctttgttttattttgttatatctttatttttcagctttc
ttttggtACAATATACAGTCTTTTTTTTCGTTTATCTGTCACGGTATTAT
TTTTGTTTGGCTAGAGAGATATTTATaagaaatattaaaatttaaatatt
atTATCATGTGATAGtttaacatttttgtaaacttcAAGTTTATAAGGGA
GAATAATTTTTTGTTACTTTGTATCATCTTATTTTAATGCTAGagtttat
atttgttttgtaATATTGACGTTTTTGAAGTCAGTAAAATACAacgtttt
cgaaaaaaaatcaacattgcTGCACGGTTTTATACCCCCTAATGAATCGT
TCAATTTTTTATTAATATTTGCAGAATCaagatttcaatgtttttttcct
tttactCTTTTCATCAGACGAATTgataagaaattaaatttttgcgttta
agagagaaaaaaaacaaatagccAGAAAAAACATAGTCAGCGAAGATTTT
TACCTGATTTCAATATCTCGCCGCTGGCTCACCATAGGATAACGATGGAT
GGCCTCACAATATTATTTcaaactaaagtctgttccaaaaatgACAGTCA
GCACATTTTGATACATTGTCCTTGAAGGTGTAGAGATAAATTAATATACT
GCTAGAAATATCGTTTTGAGTGGATTTCCacctttttaaaactttggaaC
TTccctgatttcaaatatgtattcgga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045230XLOC_045230Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072885-exon-scaffold_86-1491911889:541365..541509TCONS_00072885-exon-scaffold_86-1491911889:541365..541509Clytia hemisphaericaexon
TCONS_00072885-exon-scaffold_86-1510915933:541365..541509TCONS_00072885-exon-scaffold_86-1510915933:541365..541509Clytia hemisphaericaexon
TCONS_00072885-exon-scaffold_86-1575043694:541365..541509TCONS_00072885-exon-scaffold_86-1575043694:541365..541509Clytia hemisphaericaexon
TCONS_00072885-exon-scaffold_86-1491911889:547538..547795TCONS_00072885-exon-scaffold_86-1491911889:547538..547795Clytia hemisphaericaexon
TCONS_00072885-exon-scaffold_86-1510915933:547538..547795TCONS_00072885-exon-scaffold_86-1510915933:547538..547795Clytia hemisphaericaexon
TCONS_00072885-exon-scaffold_86-1575043694:547538..547795TCONS_00072885-exon-scaffold_86-1575043694:547538..547795Clytia hemisphaericaexon
TCONS_00072885-exon-scaffold_86-1491911889:547917..548101TCONS_00072885-exon-scaffold_86-1491911889:547917..548101Clytia hemisphaericaexon
TCONS_00072885-exon-scaffold_86-1510915933:547917..548101TCONS_00072885-exon-scaffold_86-1510915933:547917..548101Clytia hemisphaericaexon
TCONS_00072885-exon-scaffold_86-1575043694:547917..548101TCONS_00072885-exon-scaffold_86-1575043694:547917..548101Clytia hemisphaericaexon
TCONS_00072885-exon-scaffold_86-1491911889:548233..548624TCONS_00072885-exon-scaffold_86-1491911889:548233..548624Clytia hemisphaericaexon
TCONS_00072885-exon-scaffold_86-1510915933:548233..548624TCONS_00072885-exon-scaffold_86-1510915933:548233..548624Clytia hemisphaericaexon
TCONS_00072885-exon-scaffold_86-1575043694:548233..548624TCONS_00072885-exon-scaffold_86-1575043694:548233..548624Clytia hemisphaericaexon
TCONS_00072885-exon-scaffold_86-1491911889:548734..549049TCONS_00072885-exon-scaffold_86-1491911889:548734..549049Clytia hemisphaericaexon
TCONS_00072885-exon-scaffold_86-1510915933:548734..549049TCONS_00072885-exon-scaffold_86-1510915933:548734..549049Clytia hemisphaericaexon
TCONS_00072885-exon-scaffold_86-1575043694:548734..549049TCONS_00072885-exon-scaffold_86-1575043694:548734..549049Clytia hemisphaericaexon
TCONS_00072885-exon-scaffold_86-1491911889:549239..549712TCONS_00072885-exon-scaffold_86-1491911889:549239..549712Clytia hemisphaericaexon
TCONS_00072885-exon-scaffold_86-1510915933:549239..549712TCONS_00072885-exon-scaffold_86-1510915933:549239..549712Clytia hemisphaericaexon
TCONS_00072885-exon-scaffold_86-1575043694:549239..549712TCONS_00072885-exon-scaffold_86-1575043694:549239..549712Clytia hemisphaericaexon
TCONS_00072885-exon-scaffold_86-1491911889:550752..552241TCONS_00072885-exon-scaffold_86-1491911889:550752..552241Clytia hemisphaericaexon
TCONS_00072885-exon-scaffold_86-1510915933:550752..552241TCONS_00072885-exon-scaffold_86-1510915933:550752..552241Clytia hemisphaericaexon
TCONS_00072885-exon-scaffold_86-1575043694:550752..552241TCONS_00072885-exon-scaffold_86-1575043694:550752..552241Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:541365..552241 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.688287	0	1.60313	3.35961	19.4577	59.2432	94.2738	63.8676	3.85182	13.9164	8.16956	1.9875	0.198483	0	0.826491	1.2212	0.604703	5.44972e-09	2.20346e-10	0	3.02471	10.2954	6.91913e-07	2.46829	0.565388	1.81949e-10
Blast
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BLAST of TCONS_00072885 vs. Swiss-Prot (Human)
Match: PCKGC (Phosphoenolpyruvate carboxykinase, cytosolic [GTP] OS=Homo sapiens GN=PCK1 PE=1 SV=3)

HSP 1 Score: 816.994 bits (2109), Expect = 0.000e+0
Identity = 377/616 (61.20%), Postives = 474/616 (76.95%), Query Frame = 3 
Query:  204 LSKNISVTHGNFETLPNKVKDFVVQKSELCQPDFLHICDGSEDEAQSLADLLVKNGTARKLEKMDNCYAVRTNPADVARVESKTLICTENKHDTVPHTKDGVRCSVGQWTEPKEMKEKLQGLFQGCMKGRTMYVIPFSMGPVGSPLSKIGIELTDSPYVSMSMGVMTRMGSKVLNSLGDGDFVKCSHSVGQPLPLEKPDPYNWPCNPEKTVITHFPADREIISFGSGYGGNSLLGKKCFALRIASAVARDEGWLAEHMLILGLTNPQGEKKYVAAAFPSACGKTNLAMLTPTLPGWKAECVGDDIAWMKFDEEGVLRAINPEYGFFGVAPGTSMETNPQALIACQKNTVFTNCATTDDGEIYWEGLEKEVNLEGRSVTDWLGKPWTKESGTKAAHPNSRFCTPAGNCKVIDPLWEDPKGVPISAILFGGRRPEGVPLIYEAFNWQHGVFVASALCSETTAAAEHKGKAIMRDPFAMRPFFGYNAGHYFKHWLSLEDDKKHQLPKIFHVNWFRKGEDGKFLWPGFGENCRVLKWVFDRVDGKHGVQKSTVGYLPENDALDLNGLDEDLNMKELMSVPTDYWMEQLDDIEKYYNQQFGEDIPQQLWDEVHSFRERLTK 2051
            L+ +  V  G+ ++LP  V++F+   +ELCQPD +HICDGSE+E   L   + + G  R+L+K DNC+   T+P DVAR+ESKT+I T+ + DTVP  K G+   +G+W   ++ ++     F GCMKGRTMYVIPFSMGP+GSPLSKIGIELTDSPYV  SM +MTRMG+ VL ++GDG+FVKC HSVG PLPL+KP   NWPCNPE T+I H P  REIISFGSGYGGNSLLGKKCFALR+AS +A++EGWLAEHMLILG+TNP+GEKKY+AAAFPSACGKTNLAM+ P+LPGWK ECVGDDIAWMKFD +G LRAINPE GFFGVAPGTS++TNP A+   QKNT+FTN A T DG +YWEG+++ +   G ++T W  K W+ E G   AHPNSRFCTPA  C +ID  WE P+GVPI  I+FGGRRP GVPL+YEA +WQHGVFV +A+ SE TAAAEHKGK IM DPFAMRPFFGYN G Y  HWLS+      +LPKIFHVNWFRK ++GKFLWPGFGEN RVL+W+F+R+DGK   + + +GY+P+ DAL+L GL   +NM EL S+  ++W ++++DIEKY   Q   D+P ++  E+ + ++R+++
Sbjct:    9 LNLSAKVVQGSLDSLPQAVREFLENNAELCQPDHIHICDGSEEENGRLLGQMEEEGILRRLKKYDNCWLALTDPRDVARIESKTVIVTQEQRDTVPIPKTGL-SQLGRWMSEEDFEKAFNARFPGCMKGRTMYVIPFSMGPLGSPLSKIGIELTDSPYVVASMRIMTRMGTPVLEAVGDGEFVKCLHSVGCPLPLQKPLVNNWPCNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALRMASRLAKEEGWLAEHMLILGITNPEGEKKYLAAAFPSACGKTNLAMMNPSLPGWKVECVGDDIAWMKFDAQGHLRAINPENGFFGVAPGTSVKTNPNAIKTIQKNTIFTNVAETSDGGVYWEGIDEPL-ASGVTITSWKNKEWSSEDGEPCAHPNSRFCTPASQCPIIDAAWESPEGVPIEGIIFGGRRPAGVPLVYEALSWQHGVFVGAAMRSEATAAAEHKGKIIMHDPFAMRPFFGYNFGKYLAHWLSMAQHPAAKLPKIFHVNWFRKDKEGKFLWPGFGENSRVLEWMFNRIDGKASTKLTPIGYIPKEDALNLKGLGH-INMMELFSISKEFWEKEVEDIEKYLEDQVNADLPCEIEREILALKQRISQ 621
The following BLAST results are available for this feature:
BLAST of TCONS_00072885 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PCKGC0.000e+061.20Phosphoenolpyruvate carboxykinase, cytosolic [GTP]... [more]
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