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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072878 ID=TCONS_00072878|Name=TCONS_00072878|organism=Clytia hemisphaerica|type=transcript|length=2646bpRun BLAST on NCBI protein sequence of TCONS_00072878-protein >TCONS_00072878-protein ID=TCONS_00072878-protein|Name=TCONS_00072878-protein|organism=Clytia hemisphaerica|type=polypeptide|length=451bp MRECISVHVGQAGVQIGNSCWELYCIEHGITPDGRMDTNGGGSNPNDDSFRun BLAST on NCBI transcript from alignment at scaffold_86:430254..443476+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072878 ID=TCONS_00072878|Name=TCONS_00072878|organism=Clytia hemisphaerica|type=transcript|length=13223bp|location=Sequence derived from alignment at scaffold_86:430254..443476+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_86:430254..443476+ >TCONS_00072878 ID=TCONS_00072878|Name=TCONS_00072878|organism=Clytia hemisphaerica|type=CDS|length=9492bp|location=Sequence derived from alignment at scaffold_86:430254..443476+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00072878 vs. Swiss-Prot (Human)
Match: TBA1C (Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C PE=1 SV=1) HSP 1 Score: 786.178 bits (2029), Expect = 0.000e+0 Identity = 390/443 (88.04%), Postives = 419/443 (94.58%), Query Frame = 1
Query: 634 MRECISVHVGQAGVQIGNSCWELYCIEHGITPDGRMDTN---GGGSNPNDDSFSTFFSETGAGKHVPRAVFIDLEPSVVDEIRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEYIDQTLDRIRKLADACRGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSIXXXXXXXXXXXCAFMVDNEAIYDICKKNLDIERPSYTNLNRLISQIVSSITASLRFDGSLNVDLTEFQTNLVPYPRIHFPMATYAPIISAEKAFHEQNTVNEITSACFDPQNQLVKCDPRHGKYMACCLLYRGDVVPKDVNTAIAQIKTKRTIQFVDWCPTGFKVGINYQAPCAVPGGDLAKVQRAVCMLSNTTAIGEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGTDS 1953
MRECIS+HVGQAGVQIGN+CWELYC+EHGI PDG+M ++ GGG DDSF+TFFSETGAGKHVPRAVF+DLEP+V+DE+RTGTYRQLFHPEQLITGKEDAANNYARGHYT+GKE ID LDRIRKLAD C GLQGFL+FHSFGGGTGSGF+SLLMERLSVDYGKKSKLEF+IYPAPQVSTAVVEPYNSILTTHTTL+H+DCAFMVDNEAIYDIC++NLDIERP+YTNLNRLISQIVSSITASLRFDG+LNVDLTEFQTNLVPYPRIHFP+ATYAP+ISAEKA+HEQ TV EIT+ACF+P NQ+VKCDPRHGKYMACCLLYRGDVVPKDVN AIA IKTKRTIQFVDWCPTGFKVGINYQ P VPGGDLAKVQRAVCMLSNTTA+ EAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVG DS
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGG----DDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADS 439 The following BLAST results are available for this feature:
BLAST of TCONS_00072878 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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