TCONS_00072878-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00072878-protein
Unique NameTCONS_00072878-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length451

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00072878-protein ID=TCONS_00072878-protein|Name=TCONS_00072878-protein|organism=Clytia hemisphaerica|type=polypeptide|length=451bp
MRECISVHVGQAGVQIGNSCWELYCIEHGITPDGRMDTNGGGSNPNDDSF
STFFSETGAGKHVPRAVFIDLEPSVVDEIRTGTYRQLFHPEQLITGKEDA
ANNYARGHYTVGKEYIDQTLDRIRKLADACRGLQGFLIFHSFGGGTGSGF
SSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLDHTD
CAFMVDNEAIYDICKKNLDIERPSYTNLNRLISQIVSSITASLRFDGSLN
VDLTEFQTNLVPYPRIHFPMATYAPIISAEKAFHEQNTVNEITSACFDPQ
NQLVKCDPRHGKYMACCLLYRGDVVPKDVNTAIAQIKTKRTIQFVDWCPT
GFKVGINYQAPCAVPGGDLAKVQRAVCMLSNTTAIGEAWARLDHKFDLMY
SKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGTDSIDEDYDEQEE
Y
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045225XLOC_045225Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00072878TCONS_00072878Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000217Tubulin
IPR002452Alpha_tubulin
IPR018316Tubulin/FtsZ_2-layer-sand-dom
IPR003008Tubulin_FtsZ_GTPase
IPR017975Tubulin_CS
IPR008280Tub_FtsZ_C
Vocabulary: Biological Process
TermDefinition
GO:0007017microtubule-based process
Vocabulary: Cellular Component
TermDefinition
GO:0005874microtubule
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0005200structural constituent of cytoskeleton
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007017 microtubule-based process
cellular_component GO:0005874 microtubule
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0005200 structural constituent of cytoskeleton
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 419..439
NoneNo IPR availableGENE3D1.10.287.600coord: 385..436
e-value: 8.9E-31
score: 105.2
NoneNo IPR availableCDDcd02186alpha_tubulincoord: 2..436
e-value: 0.0
score: 855.681
IPR000217TubulinPRINTSPR01161TUBULINcoord: 54..73
score: 65.83
coord: 154..175
score: 43.75
coord: 381..409
score: 55.71
coord: 96..107
score: 65.77
coord: 109..133
score: 54.15
coord: 179..192
score: 68.49
coord: 135..153
score: 69.22
coord: 10..30
score: 65.47
coord: 193..213
score: 55.32
IPR002452Alpha tubulinPRINTSPR01162ALPHATUBULINcoord: 215..227
score: 72.14
coord: 89..102
score: 93.94
coord: 121..129
score: 79.83
coord: 423..439
score: 84.13
coord: 46..59
score: 75.81
coord: 361..380
score: 82.06
coord: 386..402
score: 75.58
coord: 348..361
score: 86.67
coord: 18..33
score: 79.31
coord: 162..173
score: 82.49
coord: 149..161
score: 80.41
coord: 322..343
score: 83.08
coord: 275..290
score: 68.28
IPR018316Tubulin/FtsZ, 2-layer sandwich domainSMARTSM00865Tubulin_C_4coord: 249..394
e-value: 1.5E-52
score: 190.5
IPR018316Tubulin/FtsZ, 2-layer sandwich domainPFAMPF03953Tubulin_Ccoord: 264..392
e-value: 1.5E-49
score: 167.3
IPR018316Tubulin/FtsZ, 2-layer sandwich domainGENE3D3.30.1330.20coord: 267..384
e-value: 2.7E-57
score: 191.5
IPR003008Tubulin/FtsZ, GTPase domainSMARTSM00864Tubulin_4coord: 50..247
e-value: 9.9E-81
score: 284.2
IPR003008Tubulin/FtsZ, GTPase domainPFAMPF00091Tubulincoord: 3..215
e-value: 3.9E-67
score: 226.2
IPR003008Tubulin/FtsZ, GTPase domainGENE3D3.40.50.1440coord: 1..266
e-value: 6.1E-126
score: 418.7
IPR003008Tubulin/FtsZ, GTPase domainSUPERFAMILY52490Tubulin nucleotide-binding domain-likecoord: 1..245
IPR017975Tubulin, conserved sitePROSITEPS00227TUBULINcoord: 143..149
IPR008280Tubulin/FtsZ, C-terminalSUPERFAMILY55307Tubulin C-terminal domain-likecoord: 247..438

Blast
[Close]
BLAST of TCONS_00072878-protein vs. Swiss-Prot (Human)
Match: TBA1C (Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C PE=1 SV=1)

HSP 1 Score: 813.913 bits (2101), Expect = 0.000e+0
Identity = 396/454 (87.22%), Postives = 426/454 (93.83%), Query Frame = 0 
Query:    1 MRECISVHVGQAGVQIGNSCWELYCIEHGITPDGRMDTN---GGGSNPNDDSFSTFFSETGAGKHVPRAVFIDLEPSVVDEIRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEYIDQTLDRIRKLADACRGLQGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLDHTDCAFMVDNEAIYDICKKNLDIERPSYTNLNRLISQIVSSITASLRFDGSLNVDLTEFQTNLVPYPRIHFPMATYAPIISAEKAFHEQNTVNEITSACFDPQNQLVKCDPRHGKYMACCLLYRGDVVPKDVNTAIAQIKTKRTIQFVDWCPTGFKVGINYQAPCAVPGGDLAKVQRAVCMLSNTTAIGEAWARLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGTDSIDEDYDEQEEY 451
            MRECIS+HVGQAGVQIGN+CWELYC+EHGI PDG+M ++   GGG    DDSF+TFFSETGAGKHVPRAVF+DLEP+V+DE+RTGTYRQLFHPEQLITGKEDAANNYARGHYT+GKE ID  LDRIRKLAD C GLQGFL+FHSFGGGTGSGF+SLLMERLSVDYGKKSKLEF+IYPAPQVSTAVVEPYNSILTTHTTL+H+DCAFMVDNEAIYDIC++NLDIERP+YTNLNRLISQIVSSITASLRFDG+LNVDLTEFQTNLVPYPRIHFP+ATYAP+ISAEKA+HEQ TV EIT+ACF+P NQ+VKCDPRHGKYMACCLLYRGDVVPKDVN AIA IKTKRTIQFVDWCPTGFKVGINYQ P  VPGGDLAKVQRAVCMLSNTTA+ EAWARLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVG DS D + DE EEY
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGG----DDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADSADGE-DEGEEY 449
The following BLAST results are available for this feature:
BLAST of TCONS_00072878-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBA1C0.000e+087.22Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C P... [more]
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