TCONS_00072876 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072876
Unique NameTCONS_00072876
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2166

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072876 ID=TCONS_00072876|Name=TCONS_00072876|organism=Clytia hemisphaerica|type=transcript|length=2166bp
aaaaacattacatcattatatGATTACGTGCTGGTGTTTACATTTTTCCC
AAGTTGCCCAGTTAAAAAATCTGCCTTGGGATGTGAACGGTGAATTTTTT
CTTCCCATTCACATCCCTGAACTGTAACCACTGTAACAGGCACTGAAACT
GAAAACGGACCTAACGATATATTAGTTCAAAGACTTCTTTAATAATGGTG
CAATGCAAACTGAAAGACAACTTAGGAGATCATCCATTTTGGAGGACAGA
AGATCAGAAAAAAGCAACACCAACCATACCAAAAATGATTGAAGAAATTC
TTGAATTTAAGAAAATATGGGACGGATTCCTAAAGAACATTAAAGACGAA
AGCAGAGCATACGTTGAAGAACAGCTGAAAGAGATTGAAATAGCTTTCTT
TGTTAGCGTACAGGTTGAAGAAGGGATAGGTATGGGGACCCAAGAAGAAG
ACTCTGatgaaaaattaccaaaagatAAAGTTCGAGAAGACACTGAAAAG
ATTCTGGAAGATATTGCAAGAATTGAATTAGAAGAAAAAACTGACAAGCA
TAATTTCGACTACAAAAGAACTAAATCTGTTGAAACAGTTTTAGACACTT
ACAGAAAAGGTAAAGAAAAACATCACAAGCCTGCtgcaaaaaatgaagaa
gaattgACCAATCtatataaagcaagaaaatatCTAAAGCAACTCATACA
GTTAgaacaaaatgatcaaaaattcTCACAACTCTTAGAGTTAGATATAA
TCAAAACTACACATGAAATACTAATGGAAAATCTCCTTGAGGGTAAATCT
GGACAACCTGGTCATTTTAGTAAATCCCAACGATTTGGTAGCTTTAAAGG
GAAAGAACATCACTATCCACATATTCCCGATGACAAAGTGACAACAGATA
TTTTGACAGCTCTCGTTGATTGTTACAACAGTTCAGTTGACAAACAGAAA
AGGGAAATCGACGAACTCAACTCAAAGACTTTACAGCAAATATTCCAATC
AGCtgcaaaatttttgtttatatttttacaacTACATCCATTTTCTGATG
GTAATGGTCGGCTTGGACGATTATTATGTAGCTACTTCTTAGAGCTTATT
TGCCCATTCCCAAGCTCAATTTACAATGTCTACAGTCCAACAGAGAAAAG
CGACTATGTCAAAGTCCTAGTTGCTGCAAGAGAAGGAATTGAGTTTAATG
TAACATTGAATAACAAATCAGAAGGGCttgattttttcggaaaacttTAT
GATCATGACGAATCCAATATGACAGCCCTTATCATTGAATCCAACTGgtt
ttcttggaaaaagttTATAAATGTTCtccaaaagaaattcaaagatgAGT
GTATATTAATGTAAGAGAGTATCCAATTTAGGAAAAAATTCTGAAGACAA
ATTTTTACTATATGAACGCTTTGAAAAAATAGCAGAAATTTAGAATTCCT
AAAAATAATCTTCGTTAAAATTCACATTATTAGTCGAGTGAAACAGCGTA
AAGAAAATGACACGACTTACAAGGTCctaatttctttcttctttgtttGT
AAAACTAATTAAATCTATCAAGTTTAAAAAATATCACAAGTGCTTGTGAG
GCTCTTACGGTGTAAATTCGTTCATAGGGTTAGAGGATATCATTctacaa
attaaaatttagcCCTAGaaatggcaaaaaattttcgatACTCCATTTGA
ATATATCTTCCACTCCCTATGAACGGTTTAATCTGGAAGAACCCACTGCA
CATCATTCATCAATAGAAGCACCTATTTTACATATTATGAAACATTGCTG
GTAAAtgtatttattaatttttttatattctaggagttttttttggaaaa
actgtCTGCAAATTTCTATGATAtataatgaatcaacggatcctgcacta
atgtacttcccagttttctcaaaggtaacgaatcgagtgggaattgaacc
cacgacctctcgcttgccgggcgattgctctcccaacaaacattcgttac
ctttgagaaaactgggaagtacattagtgcaggatccgttgattcattac
ctataagtaatacgcacttgatttcacacaCTATGATATATATTTAGTCA
TTATGAAAATGGGCAAAATAAAATCATAGTTTGTTTAACACCGTTTTTTC
TAATACTCCTCTTTTA
Run BLAST on NCBI

transcript from alignment at scaffold_86:430198..433437+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072876 ID=TCONS_00072876|Name=TCONS_00072876|organism=Clytia hemisphaerica|type=transcript|length=3240bp|location=Sequence derived from alignment at scaffold_86:430198..433437+ (Clytia hemisphaerica)
aaaaacattacatcattatatGATTACGTGCTGGTGTTTACATTTTTCCC AAGTTGCCCAGTTAAAAAATCTGCCTTGGGATGTGAACGGTGAATTTTTT CTTCCCATTCACATCCCTGAACTGTAACCACTGTAACAGGCACTGAAACT GAAAACGGACCTAACGATATATTAGTTCAAAGACTTCTTTAATAATGGTA AGACCGATTCTTTTAatcatttcttttttcattagTGAAACTTTGTCATC CCATCATGAACCATGCCCGACAGCGCTTCGCTGCCATTGTATGGCTCACA GGAGGGCAGGATGGCGATGGGAATCaggcagaaaaaaataaaaatcaacc tTGAATACCGCAAGAGGGAAAATCTGGTTTTTAGGTTCTTAATTTATACC TTCAAATTATGGTTTGGGATTATTTTTACGCTGAATAGTTGAGAGTTTAT CAAGGGTATGTATATACCGTGAAaaggggtaacttgcatcagtggaggct aacatgcatagccctcaaatgaaagacccggctggtcattaaaatatgaa aataaatcaaaacaaaaatggtagagaacagctgcgagcggagctgcgta tgtgtattttaatgaccagccaggtcattcatttgagggctatgcatgtt agcctccactgatgcaagttaccctttctcaCGACACGGTACATTAACAG GTTTTTTTTATAGAGGGAACCTTAAACTTGGCTCCGATGTCCGACACCGG AGTCTAGAGCTCCTTATTTTTTCCAGACAGTTTCAGTTTTTGTAATAACA ACCACTCAACTAACATTTGTTATTCGTTATTCTGAAGGTGCAATGCAAAC TGAAAGACAACTTAGGAGATCATCCATTTTGGAGGACAGAAGATCAGAAA AAAGCAACACCAACCATACCAAAAATGATTGAAGAAATTCTTGAATTTAA GAAAATATGGGACGGATTCCTAAAGAACATTAAAGACGAAAGCAGAGCAT ACGTTGAAGAACAGCTGAAAGAGATTGAAATAGCTTTCTTTGTTAGCGTA CAGGTTGAAGAAGTAAGTATTAAAAAACTTTGTGtaataccgtgaagtcg ggtaacttgcatcagttcagtggaggctaacatgcatagccctcaaataa atgacctggccGGTCCTTAAaacacaaagttaaatcaaaacaaaaatggt agagtagagctgcgagtggagctgcgtagttcatttgttttgaaattttg ctgctttgattggtcagtcatttgagggctatgcatgttagcctccactg atggaagttacccgacttcaggGTAGACTTCAGTAGGATGTGATATCATT TCAAATCCAAAAATTGGTGATGAAAACATTATGTAATGACTCCAGAAAAA CTATTACACAATTCTTCAGGCTGAAAAATTTAACTGACTTCAAGAAATTT TTGGGAAAGCTGAGCTTAATTTTGTGCAATTGTTTTTCACTTTCAGGGGA TAGGTATGGGGACCCAAGAAGAAGACTCTGatgaaaaattaccaaaagat AAAGTTCGAGAAGACACTGAAAAGATTCTGGAAGATATTGCAAGAATTGA ATTAGAAGAAAAAACTGACAAGCATAATTTCGACTACAAAAGAACTAAAT CTGTTGAAACAGTTTTAGACACTTACAGAAAAGGTAAAGAAAAACATCAC AAGCCTGCtgcaaaaaatgaagaagaattgACCAATCtatataaagcaag aaaatatCTAAAGCAACTCATACAGTTAgaacaaaatgatcaaaaattcT CACAACTCTTAGAGTTAGATATAATCAAAACTACACATGAAATACTAATG GAAAATCTCCTTGAGGGTAAATCTGGACAACCTGGTCATTTTAGTAAATC CCAACGATTTGGTAGCTTTAAAGGGAAAGAACATCACTATCCACATATTC CCGATGACAAAGTGACAACAGATATTTTGACAGCTCTCGTTGATTGTTAC AACAGTTCAGTTGACAAACAGAAAAGGGAAATCGACGAACTCAACTCAAA GACTTTACAGCAAATATTCCAATCAGCtgcaaaatttttgtttatatttt tacaacTACATCCATTTTCTGATGGTAATGGTCGGCTTGGACGATTATTA TGTAGCTACTTCTTAGAGCTTATTTGCCCATTCCCAAGCTCAATTTACAA TGTCTACAGTCCAACAGAGAAAAGCGACTATGTCAAAGTCCTAGTTGCTG CAAGAGAAGGAATTGAGTTTAATGTAACATTGAATAACAAATCAGAAGGG CttgattttttcggaaaacttTATGATCATGACGAATCCAATATGACAGC CCTTATCATTGAATCCAACTGgttttcttggaaaaagttTATAAATGTTC tccaaaagaaattcaaagatgAGTGTATATTAATGTAAGAGAGTATCCAA TTTAGGAAAAAATTCTGAAGACAAATTTTTACTATATGAACGCTTTGAAA AAATAGCAGAAATTTAGAATTCCTAAAAATAATCTTCGTTAAAATTCACA TTATTAGTCGAGTGAAACAGCGTAAAGAAAATGACACGACTTACAAGGTC ctaatttctttcttctttgtttGTAAAACTAATTAAATCTATCAAGTTTA AAAAATATCACAAGTGCTTGTGAGGCTCTTACGGTGTAAATTCGTTCATA GGGTTAGAGGATATCATTctacaaattaaaatttagcCCTAGaaatggca aaaaattttcgatACTCCATTTGAATATATCTTCCACTCCCTATGAACGG TTTAATCTGGAAGAACCCACTGCACATCATTCATCAATAGAAGCACCTAT TTTACATATTATGAAACATTGCTGGTAAAtgtatttattaatttttttat attctaggagttttttttggaaaaactgtCTGCAAATTTCTATGATAtat aatgaatcaacggatcctgcactaatgtacttcccagttttctcaaaggt aacgaatcgagtgggaattgaacccacgacctctcgcttgccgggcgatt gctctcccaacaaacattcgttacctttgagaaaactgggaagtacatta gtgcaggatccgttgattcattacctataagtaatacgcacttgatttca cacaCTATGATATATATTTAGTCATTATGAAAATGGGCAAAATAAAATCA TAGTTTGTTTAACACCGTTTTTTCTAATACTCCTCTTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045225XLOC_045225Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072876-exon-scaffold_86-1491911889:430198..430394TCONS_00072876-exon-scaffold_86-1491911889:430198..430394Clytia hemisphaericaexon
TCONS_00072876-exon-scaffold_86-1510915933:430198..430394TCONS_00072876-exon-scaffold_86-1510915933:430198..430394Clytia hemisphaericaexon
TCONS_00072876-exon-scaffold_86-1575043694:430198..430394TCONS_00072876-exon-scaffold_86-1575043694:430198..430394Clytia hemisphaericaexon
TCONS_00072876-exon-scaffold_86-1491911889:431035..431259TCONS_00072876-exon-scaffold_86-1491911889:431035..431259Clytia hemisphaericaexon
TCONS_00072876-exon-scaffold_86-1510915933:431035..431259TCONS_00072876-exon-scaffold_86-1510915933:431035..431259Clytia hemisphaericaexon
TCONS_00072876-exon-scaffold_86-1575043694:431035..431259TCONS_00072876-exon-scaffold_86-1575043694:431035..431259Clytia hemisphaericaexon
TCONS_00072876-exon-scaffold_86-1491911889:431694..433437TCONS_00072876-exon-scaffold_86-1491911889:431694..433437Clytia hemisphaericaexon
TCONS_00072876-exon-scaffold_86-1510915933:431694..433437TCONS_00072876-exon-scaffold_86-1510915933:431694..433437Clytia hemisphaericaexon
TCONS_00072876-exon-scaffold_86-1575043694:431694..433437TCONS_00072876-exon-scaffold_86-1575043694:431694..433437Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:430198..433437 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.0558 16.9436 8.95645 8.02942 86.1404 59.189 60.4608 65.7534 82.8106 95.6031 159.608 115.349 138.03 122.295 79.1962 83.334 30.4652 49.9163 151.203 172.355 81.8471 76.4937 50.7758 65.3536 68.0753 98.9659 113.699 105.666 116.533 112.029
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072876 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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