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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072876 ID=TCONS_00072876|Name=TCONS_00072876|organism=Clytia hemisphaerica|type=transcript|length=2166bp
aaaaacattacatcattatatGATTACGTGCTGGTGTTTACATTTTTCCC
AAGTTGCCCAGTTAAAAAATCTGCCTTGGGATGTGAACGGTGAATTTTTT
CTTCCCATTCACATCCCTGAACTGTAACCACTGTAACAGGCACTGAAACT
GAAAACGGACCTAACGATATATTAGTTCAAAGACTTCTTTAATAATGGTG
CAATGCAAACTGAAAGACAACTTAGGAGATCATCCATTTTGGAGGACAGA
AGATCAGAAAAAAGCAACACCAACCATACCAAAAATGATTGAAGAAATTC
TTGAATTTAAGAAAATATGGGACGGATTCCTAAAGAACATTAAAGACGAA
AGCAGAGCATACGTTGAAGAACAGCTGAAAGAGATTGAAATAGCTTTCTT
TGTTAGCGTACAGGTTGAAGAAGGGATAGGTATGGGGACCCAAGAAGAAG
ACTCTGatgaaaaattaccaaaagatAAAGTTCGAGAAGACACTGAAAAG
ATTCTGGAAGATATTGCAAGAATTGAATTAGAAGAAAAAACTGACAAGCA
TAATTTCGACTACAAAAGAACTAAATCTGTTGAAACAGTTTTAGACACTT
ACAGAAAAGGTAAAGAAAAACATCACAAGCCTGCtgcaaaaaatgaagaa
gaattgACCAATCtatataaagcaagaaaatatCTAAAGCAACTCATACA
GTTAgaacaaaatgatcaaaaattcTCACAACTCTTAGAGTTAGATATAA
TCAAAACTACACATGAAATACTAATGGAAAATCTCCTTGAGGGTAAATCT
GGACAACCTGGTCATTTTAGTAAATCCCAACGATTTGGTAGCTTTAAAGG
GAAAGAACATCACTATCCACATATTCCCGATGACAAAGTGACAACAGATA
TTTTGACAGCTCTCGTTGATTGTTACAACAGTTCAGTTGACAAACAGAAA
AGGGAAATCGACGAACTCAACTCAAAGACTTTACAGCAAATATTCCAATC
AGCtgcaaaatttttgtttatatttttacaacTACATCCATTTTCTGATG
GTAATGGTCGGCTTGGACGATTATTATGTAGCTACTTCTTAGAGCTTATT
TGCCCATTCCCAAGCTCAATTTACAATGTCTACAGTCCAACAGAGAAAAG
CGACTATGTCAAAGTCCTAGTTGCTGCAAGAGAAGGAATTGAGTTTAATG
TAACATTGAATAACAAATCAGAAGGGCttgattttttcggaaaacttTAT
GATCATGACGAATCCAATATGACAGCCCTTATCATTGAATCCAACTGgtt
ttcttggaaaaagttTATAAATGTTCtccaaaagaaattcaaagatgAGT
GTATATTAATGTAAGAGAGTATCCAATTTAGGAAAAAATTCTGAAGACAA
ATTTTTACTATATGAACGCTTTGAAAAAATAGCAGAAATTTAGAATTCCT
AAAAATAATCTTCGTTAAAATTCACATTATTAGTCGAGTGAAACAGCGTA
AAGAAAATGACACGACTTACAAGGTCctaatttctttcttctttgtttGT
AAAACTAATTAAATCTATCAAGTTTAAAAAATATCACAAGTGCTTGTGAG
GCTCTTACGGTGTAAATTCGTTCATAGGGTTAGAGGATATCATTctacaa
attaaaatttagcCCTAGaaatggcaaaaaattttcgatACTCCATTTGA
ATATATCTTCCACTCCCTATGAACGGTTTAATCTGGAAGAACCCACTGCA
CATCATTCATCAATAGAAGCACCTATTTTACATATTATGAAACATTGCTG
GTAAAtgtatttattaatttttttatattctaggagttttttttggaaaa
actgtCTGCAAATTTCTATGATAtataatgaatcaacggatcctgcacta
atgtacttcccagttttctcaaaggtaacgaatcgagtgggaattgaacc
cacgacctctcgcttgccgggcgattgctctcccaacaaacattcgttac
ctttgagaaaactgggaagtacattagtgcaggatccgttgattcattac
ctataagtaatacgcacttgatttcacacaCTATGATATATATTTAGTCA
TTATGAAAATGGGCAAAATAAAATCATAGTTTGTTTAACACCGTTTTTTC
TAATACTCCTCTTTTA Run BLAST on NCBI transcript from alignment at scaffold_86:430198..433437+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072876 ID=TCONS_00072876|Name=TCONS_00072876|organism=Clytia hemisphaerica|type=transcript|length=3240bp|location=Sequence derived from alignment at scaffold_86:430198..433437+ (Clytia hemisphaerica)
aaaaacattacatcattatatGATTACGTGCTGGTGTTTACATTTTTCCC
AAGTTGCCCAGTTAAAAAATCTGCCTTGGGATGTGAACGGTGAATTTTTT
CTTCCCATTCACATCCCTGAACTGTAACCACTGTAACAGGCACTGAAACT
GAAAACGGACCTAACGATATATTAGTTCAAAGACTTCTTTAATAATGGTA
AGACCGATTCTTTTAatcatttcttttttcattagTGAAACTTTGTCATC
CCATCATGAACCATGCCCGACAGCGCTTCGCTGCCATTGTATGGCTCACA
GGAGGGCAGGATGGCGATGGGAATCaggcagaaaaaaataaaaatcaacc
tTGAATACCGCAAGAGGGAAAATCTGGTTTTTAGGTTCTTAATTTATACC
TTCAAATTATGGTTTGGGATTATTTTTACGCTGAATAGTTGAGAGTTTAT
CAAGGGTATGTATATACCGTGAAaaggggtaacttgcatcagtggaggct
aacatgcatagccctcaaatgaaagacccggctggtcattaaaatatgaa
aataaatcaaaacaaaaatggtagagaacagctgcgagcggagctgcgta
tgtgtattttaatgaccagccaggtcattcatttgagggctatgcatgtt
agcctccactgatgcaagttaccctttctcaCGACACGGTACATTAACAG
GTTTTTTTTATAGAGGGAACCTTAAACTTGGCTCCGATGTCCGACACCGG
AGTCTAGAGCTCCTTATTTTTTCCAGACAGTTTCAGTTTTTGTAATAACA
ACCACTCAACTAACATTTGTTATTCGTTATTCTGAAGGTGCAATGCAAAC
TGAAAGACAACTTAGGAGATCATCCATTTTGGAGGACAGAAGATCAGAAA
AAAGCAACACCAACCATACCAAAAATGATTGAAGAAATTCTTGAATTTAA
GAAAATATGGGACGGATTCCTAAAGAACATTAAAGACGAAAGCAGAGCAT
ACGTTGAAGAACAGCTGAAAGAGATTGAAATAGCTTTCTTTGTTAGCGTA
CAGGTTGAAGAAGTAAGTATTAAAAAACTTTGTGtaataccgtgaagtcg
ggtaacttgcatcagttcagtggaggctaacatgcatagccctcaaataa
atgacctggccGGTCCTTAAaacacaaagttaaatcaaaacaaaaatggt
agagtagagctgcgagtggagctgcgtagttcatttgttttgaaattttg
ctgctttgattggtcagtcatttgagggctatgcatgttagcctccactg
atggaagttacccgacttcaggGTAGACTTCAGTAGGATGTGATATCATT
TCAAATCCAAAAATTGGTGATGAAAACATTATGTAATGACTCCAGAAAAA
CTATTACACAATTCTTCAGGCTGAAAAATTTAACTGACTTCAAGAAATTT
TTGGGAAAGCTGAGCTTAATTTTGTGCAATTGTTTTTCACTTTCAGGGGA
TAGGTATGGGGACCCAAGAAGAAGACTCTGatgaaaaattaccaaaagat
AAAGTTCGAGAAGACACTGAAAAGATTCTGGAAGATATTGCAAGAATTGA
ATTAGAAGAAAAAACTGACAAGCATAATTTCGACTACAAAAGAACTAAAT
CTGTTGAAACAGTTTTAGACACTTACAGAAAAGGTAAAGAAAAACATCAC
AAGCCTGCtgcaaaaaatgaagaagaattgACCAATCtatataaagcaag
aaaatatCTAAAGCAACTCATACAGTTAgaacaaaatgatcaaaaattcT
CACAACTCTTAGAGTTAGATATAATCAAAACTACACATGAAATACTAATG
GAAAATCTCCTTGAGGGTAAATCTGGACAACCTGGTCATTTTAGTAAATC
CCAACGATTTGGTAGCTTTAAAGGGAAAGAACATCACTATCCACATATTC
CCGATGACAAAGTGACAACAGATATTTTGACAGCTCTCGTTGATTGTTAC
AACAGTTCAGTTGACAAACAGAAAAGGGAAATCGACGAACTCAACTCAAA
GACTTTACAGCAAATATTCCAATCAGCtgcaaaatttttgtttatatttt
tacaacTACATCCATTTTCTGATGGTAATGGTCGGCTTGGACGATTATTA
TGTAGCTACTTCTTAGAGCTTATTTGCCCATTCCCAAGCTCAATTTACAA
TGTCTACAGTCCAACAGAGAAAAGCGACTATGTCAAAGTCCTAGTTGCTG
CAAGAGAAGGAATTGAGTTTAATGTAACATTGAATAACAAATCAGAAGGG
CttgattttttcggaaaacttTATGATCATGACGAATCCAATATGACAGC
CCTTATCATTGAATCCAACTGgttttcttggaaaaagttTATAAATGTTC
tccaaaagaaattcaaagatgAGTGTATATTAATGTAAGAGAGTATCCAA
TTTAGGAAAAAATTCTGAAGACAAATTTTTACTATATGAACGCTTTGAAA
AAATAGCAGAAATTTAGAATTCCTAAAAATAATCTTCGTTAAAATTCACA
TTATTAGTCGAGTGAAACAGCGTAAAGAAAATGACACGACTTACAAGGTC
ctaatttctttcttctttgtttGTAAAACTAATTAAATCTATCAAGTTTA
AAAAATATCACAAGTGCTTGTGAGGCTCTTACGGTGTAAATTCGTTCATA
GGGTTAGAGGATATCATTctacaaattaaaatttagcCCTAGaaatggca
aaaaattttcgatACTCCATTTGAATATATCTTCCACTCCCTATGAACGG
TTTAATCTGGAAGAACCCACTGCACATCATTCATCAATAGAAGCACCTAT
TTTACATATTATGAAACATTGCTGGTAAAtgtatttattaatttttttat
attctaggagttttttttggaaaaactgtCTGCAAATTTCTATGATAtat
aatgaatcaacggatcctgcactaatgtacttcccagttttctcaaaggt
aacgaatcgagtgggaattgaacccacgacctctcgcttgccgggcgatt
gctctcccaacaaacattcgttacctttgagaaaactgggaagtacatta
gtgcaggatccgttgattcattacctataagtaatacgcacttgatttca
cacaCTATGATATATATTTAGTCATTATGAAAATGGGCAAAATAAAATCA
TAGTTTGTTTAACACCGTTTTTTCTAATACTCCTCTTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072876-exon-scaffold_86-1491911889:430198..430394 | TCONS_00072876-exon-scaffold_86-1491911889:430198..430394 | Clytia hemisphaerica | exon |
| TCONS_00072876-exon-scaffold_86-1510915933:430198..430394 | TCONS_00072876-exon-scaffold_86-1510915933:430198..430394 | Clytia hemisphaerica | exon |
| TCONS_00072876-exon-scaffold_86-1575043694:430198..430394 | TCONS_00072876-exon-scaffold_86-1575043694:430198..430394 | Clytia hemisphaerica | exon |
| TCONS_00072876-exon-scaffold_86-1491911889:431035..431259 | TCONS_00072876-exon-scaffold_86-1491911889:431035..431259 | Clytia hemisphaerica | exon |
| TCONS_00072876-exon-scaffold_86-1510915933:431035..431259 | TCONS_00072876-exon-scaffold_86-1510915933:431035..431259 | Clytia hemisphaerica | exon |
| TCONS_00072876-exon-scaffold_86-1575043694:431035..431259 | TCONS_00072876-exon-scaffold_86-1575043694:431035..431259 | Clytia hemisphaerica | exon |
| TCONS_00072876-exon-scaffold_86-1491911889:431694..433437 | TCONS_00072876-exon-scaffold_86-1491911889:431694..433437 | Clytia hemisphaerica | exon |
| TCONS_00072876-exon-scaffold_86-1510915933:431694..433437 | TCONS_00072876-exon-scaffold_86-1510915933:431694..433437 | Clytia hemisphaerica | exon |
| TCONS_00072876-exon-scaffold_86-1575043694:431694..433437 | TCONS_00072876-exon-scaffold_86-1575043694:431694..433437 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:430198..433437 + |
Blast
The following BLAST results are available for this feature:
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