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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072875 ID=TCONS_00072875|Name=TCONS_00072875|organism=Clytia hemisphaerica|type=transcript|length=1890bp
CTTCTAACTaatttgaaaactttaattCCCACAATGGCAGCTTTTCTTCA
TGAAGTTTTGTAACCGACTTTTAAACTTATTTATAAGTTTTTTTAGCGAG
GAAACTGAGGTATACAACAAGagacaccttttcgaccgtagtcgcgcggt
caggtgcgtgccactttattgCTAATTTATCACTCTAAGCTCTAATCTAA
tcccttttttacactttttctattgtctttaggcgcGAAAAAATGACGGg
gatggttttagggtggttaaacagacaaaaaatgtccgcgcggtaattgg
cgggtacggtcgaaaaggtgtattatagcAAAATGAGAACATATATACAA
ATTACAAGTAGGAACAGATGTTTGTGAAAAACGTCAATGTCAGAGGAAGA
CCTTTTGAACTAAAGTGTAAAAATGACACTTCCAGAAGACTCAACGGTGG
AGTTCGATCAAACTGACGAAGCCTTTGAGGAGGAGGGTACGATCAATCAA
ACCGGTCTATCGGCACGGGATAAATTAATTAAGGAAGGAACTGAACTAGG
TTACAATACCACAAAACACGAACAAATACAACAAAGTACAAAACAGCAGG
ATCAAATAAGCAagtcaaaacaagaaaatatctTGCACAGCGAGGACGAT
AAAACAGTATGGCGTACTATAAAAAACACTTGTTTGAAAGATAAGCCATT
GAGAAATCGTAGACTTGGTCTTATTCACCAACAATATTCTGCTTCACATG
AAGATTTGAGAAACGTATCAAACAATAATCGGAGATTATCGAAAGATAAT
TTGAATTTATCAGCAAAAGATCTTCATTTACGAGCTTCTAACGGAGATTT
ACGACGAGTTCAGGATACGACTGTAAACCAGCACCATCAAAGAGCTTCGA
CAGAAAATTTACATTTACTACATAGAAATCAACACTTGCGACGGGTTTCC
GTTCCACATTTGGATCAAACGAGGAGCTTACCTGTGAGCCCGGTCATGTC
TCCACGCTTAATGCGTCGCGCGAAAGAAAACACAGGGTTCATACCTTGTC
CACCTGATTCTCCGAAATCGAATCGCAAACACATAAGGAGGTCAAGCAAC
ACAAACTTGAATCACATCAAAAATATGAGAAATCCAGAATCCCCTTTGAC
AATACAATGTGCAGAAGATGAGGAAATTAGAATTTTAAACTTATCTGGTG
GAAAATCTGTCAACCCAACGGatgattttttgttaaaattcgcTATCCAT
CGATCACAAAGTGTGAAATCATTGCCGAACGCCATGTCACCACCACCGAC
AAATATGACCCGGCAACTACCGACGAATTACTCGACAGGACGACGGAAAT
CGTTGCATAATCTGCAACGTTGTCAATCGACTATGAGTTTACCGAATTCT
CCCCCGCAAACACCGATCGGTAACGCCGATCATCCATCGGGAGATTATCT
TGCTAGTCGGCGTAGAACGGTAGCGCTCGATAGAGGAATTCAACTTCGAA
AGACATTCGAGGAATGGTTGAACACAAAAACGCAAGAAAATCGGAGACGT
TCGTTACACACGCTACACGTGAAAGAAATCGAACGATTACGTGAAGAACA
ATCGAAAAAAGAACGATTCGATCGAGGAAAAACATTCGATGAAtggaaat
atgaaaaagaagaacGATTACGTCAGCAAATATGTCACGAGAAAGAGAAA
ACGAAAATTCTAAGTGAACAACAAGTGGTTAAAGAAAAGACAAATGAAGA
GTTAAGAGAAAAGAAGTATAATGAATGgcttgttaaaaaattcgaGCAAG
AATTGAGAGATGAGGAacagaaaattgaagaattaaGAAACAGAGAGAAA
CTGAAACAGAAAAAACgacgaaattcaaaataattttttt Run BLAST on NCBI transcript from alignment at scaffold_86:414200..417519+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072875 ID=TCONS_00072875|Name=TCONS_00072875|organism=Clytia hemisphaerica|type=transcript|length=3320bp|location=Sequence derived from alignment at scaffold_86:414200..417519+ (Clytia hemisphaerica)
CTTCTAACTaatttgaaaactttaattCCCACAATGGCAGCTTTTCTTCA
TGAAGTTTTGTAACCGACTTTTAAACTTATTTATAAGTTTTTTTAGCGAG
GAAACTGAGGTATACAACAAGagacaccttttcgaccgtagtcgcgcggt
caggtgcgtgccactttattgCTAATTTATCACTCTAAGCTCTAATCTAA
tcccttttttacactttttctattgtctttaggcgcGAAAAAATGACGGg
gatggttttagggtggttaaacagacaaaaaatgtccgcgcggtaattgg
cgggtacggtcgaaaaggtgtattatagcAAAATGAGAACATATATACAA
ATTACAAGTAGGAACAGATGTTTGTGAAAAACGTCAATGTCAGAGGAAGA
CCTTTTGAACTAAAGGTAAAGATCCGGTTTCTCTTTAATCACACCACGCA
ACTTCGTGATATACGATAAGTGTTAGTGTTTTGTACAATGACGCAGATTA
GGACCTGAGTGAGGAAACCCTGCACAAGTGGCAAGGGGGTGAATTGTGGA
GGCGTAGAAAATATCAGAATTGATTTTTAactcaaaaatatcaatttaaa
ttattaaaataattaaattcCCTCAGAACTATAAAGGACTAATTTTGAAA
GCATATTATTAGCTGATCTTTTCGGCTGCTCCCAATAAGTGCTCCTGCGC
TGCCTCAAAGGTTTAAAGTGGTCAAACTATTCAATCCGATGGGAGAAAAG
GATAAATAataacatccctgtctcagtgccccggtggaaatttttccctc
agtgggaatgaaaatctctgtcgaaatcccaatggggatagaaaatctat
tgtttccagttTGAAAATtctagtggggatggttttgaagtgcaattttt
tccattcaactTCCAATGGGAAAAAATCATAGGGCAATATCCCAGTgcgg
tttgaaattttttccaccggggacgattttttgccaatttttccgggggg
ggggggtttttttttcatttttccaggggggggggggggtccaccgggtc
tgtgacacagggatgtatAAGATATAGGTCTTCGAGCAAACTTTCTATAC
TTTCCATGCCGAACGATGAAGAGACGTCATTAAGTTGACAGGCAAACTTC
GGTgggatacacgctttttttacaagaataacttctataagaatatcaga
gTGAGGTTTCGgagttagaacaataggcctattgtttagaacaatagaaa
aataagaataatacCAATGCTTAGCCTCAGCCACATTagagtattcttat
aaaaaaagcgtgtactacTCTTTTGATATGAATTGTAAGGGACAAAATAA
GTCATATAAAAAGANtaaactattcttataaaaaagcgtgtattactctt
tcttttgatatgaGTTGTAAGGAACATATAAAAAGGACAAGAAATTGCTA
AGCATGCGGAACTTGATACCACAATGTAAACATAGCCTTATAGGATAacc
tttttttcaaatccatctattcttgtttttgtattttttgacagTGTAAA
AATGACACTTCCAGAAGACTCAACGGTGGAGTTCGATCAAACTGACGAAG
CCTTTGAGGAGGAGGGTACGATCAATCAAACCGGTCTATCGGCACGGGAT
AAATTAATTAAGGAAGGAACTGAACTAGGTTACAATACCACAAAACACGA
ACAAATACAACAAAGTACAAAACAGCAGGATCAAATAAGCAagtcaaaac
aagaaaatatctTGCACAGCGAGGACGATAAAACAGTATGGCGTACTATA
AAAAACACTTGTTTGAAAGATAAGCCATTGAGAAATCGTAGACTTGGTCT
TATTCACCAACAATATTCTGCTTCACATGAAGATTTGAGAAACGTATCAA
ACAATAATCGGAGATTATCGAAAGATAATTTGAATTTATCAGCAAAAGAT
CTTCATTTACGAGCTTCTAACGGAGATTTACGACGAGTTCAGGATACGAC
TGTAAACCAGCACCATCAAAGAGCTTCGACAGAAAATTTACATTTACTAC
ATAGAAATCAACACTTGCGACGGGTTTCCGTTCCACATTTGGATCAAACG
AGGAGCTTACCTGTGAGCCCGGTCATGTCTCCACGCTTAATGCGTCGCGC
GAAAGAAAACACAGGGTTCATACCTTGTCCACCTGATTCTCCGAAATCGA
ATCGCAAACACATAAGGAGGTCAAGCAACACAAACTTGAATCACATCAAA
AATATGAGAAATCCAGAATCCCCTTTGACAATACAATGTGCAGAAGATGA
GGAAATTAGAATTTTAAACTTATCTGGTGGAAAATCTGTCAACCCAACGG
atgattttttgttaaaattcgcTATCCATCGATCACAAAGGTAACGTCCA
TAAGCTCGCCTACTTCACAATAAACTCTCCCTATTTCGACCTCTGTTATT
TCGTTCTCCCCATAGCCCAAGTTAATTTGACTAATTTGTGAGCGTTCGAG
TTGAAAAAAGGGtgataaaaatgacaatttaaatAAGACAAAGTCAGGGA
TGGAGGTGTTGCTCATATAAGGAGGAAATCATGCTTCAGCCTTTGTATCA
ATTTAATGctaatttattcaatttttcaagcgaaaaaaaattacagtaaa
ACGTTCTTTTTTATCAATGTTTCATATAAACTCTTTTTCAGTGTGAAATC
ATTGCCGAACGCCATGTCACCACCACCGACAAATATGACCCGGCAACTAC
CGACGAATTACTCGACAGGACGACGGAAATCGTTGCATAATCTGCAACGT
TGTCAATCGACTATGAGTTTACCGAATTCTCCCCCGCAAACACCGATCGG
TAACGCCGATCATCCATCGGGAGATTATCTTGCTAGTCGGCGTAGAACGG
TAGCGCTCGATAGAGGAATTCAACTTCGAAAGACATTCGAGGAATGGTTG
AACACAAAAACGCAAGAAAATCGGAGACGTTCGTTACACACGCTACACGT
GAAAGAAATCGAACGATTACGTGAAGAACAATCGAAAAAAGAACGATTCG
ATCGAGGAAAAACATTCGATGAAtggaaatatgaaaaagaagaacGATTA
CGTCAGCAAATATGTCACGAGAAAGAGAAAACGAAAATTCTAAGTGAACA
ACAAGTGGTTAAAGAAAAGACAAATGAAGAGTTAAGAGAAAAGAAGTATA
ATGAATGgcttgttaaaaaattcgaGCAAGAATTGAGAGATGAGGAacag
aaaattgaagaattaaGAAACAGAGAGAAACTGAAACAGAAAAAACgacg
aaattcaaaataattttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072875-exon-scaffold_86-1491911889:414200..414614 | TCONS_00072875-exon-scaffold_86-1491911889:414200..414614 | Clytia hemisphaerica | exon |
| TCONS_00072875-exon-scaffold_86-1510915933:414200..414614 | TCONS_00072875-exon-scaffold_86-1510915933:414200..414614 | Clytia hemisphaerica | exon |
| TCONS_00072875-exon-scaffold_86-1575043694:414200..414614 | TCONS_00072875-exon-scaffold_86-1575043694:414200..414614 | Clytia hemisphaerica | exon |
| TCONS_00072875-exon-scaffold_86-1491911889:415744..416589 | TCONS_00072875-exon-scaffold_86-1491911889:415744..416589 | Clytia hemisphaerica | exon |
| TCONS_00072875-exon-scaffold_86-1510915933:415744..416589 | TCONS_00072875-exon-scaffold_86-1510915933:415744..416589 | Clytia hemisphaerica | exon |
| TCONS_00072875-exon-scaffold_86-1575043694:415744..416589 | TCONS_00072875-exon-scaffold_86-1575043694:415744..416589 | Clytia hemisphaerica | exon |
| TCONS_00072875-exon-scaffold_86-1491911889:416891..417519 | TCONS_00072875-exon-scaffold_86-1491911889:416891..417519 | Clytia hemisphaerica | exon |
| TCONS_00072875-exon-scaffold_86-1510915933:416891..417519 | TCONS_00072875-exon-scaffold_86-1510915933:416891..417519 | Clytia hemisphaerica | exon |
| TCONS_00072875-exon-scaffold_86-1575043694:416891..417519 | TCONS_00072875-exon-scaffold_86-1575043694:416891..417519 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:414200..417519 + |
Blast
The following BLAST results are available for this feature:
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