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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072869 ID=TCONS_00072869|Name=TCONS_00072869|organism=Clytia hemisphaerica|type=transcript|length=2169bpRun BLAST on NCBI protein sequence of TCONS_00072869-protein >TCONS_00072869-protein ID=TCONS_00072869-protein|Name=TCONS_00072869-protein|organism=Clytia hemisphaerica|type=polypeptide|length=533bp MQSCAYLIAICILFACTSAWMDKEERLKYREKARQMFYHGYDNYLKHAYPRun BLAST on NCBI transcript from alignment at scaffold_86:331304..337796+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072869 ID=TCONS_00072869|Name=TCONS_00072869|organism=Clytia hemisphaerica|type=transcript|length=6493bp|location=Sequence derived from alignment at scaffold_86:331304..337796+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_86:331304..337796+ >TCONS_00072869 ID=TCONS_00072869|Name=TCONS_00072869|organism=Clytia hemisphaerica|type=CDS|length=19224bp|location=Sequence derived from alignment at scaffold_86:331304..337796+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00072869 vs. Swiss-Prot (Human)
Match: EDEM2 (ER degradation-enhancing alpha-mannosidase-like protein 2 OS=Homo sapiens GN=EDEM2 PE=1 SV=2) HSP 1 Score: 587.8 bits (1514), Expect = 0.000e+0 Identity = 288/488 (59.02%), Postives = 371/488 (76.02%), Query Frame = 1
Query: 196 YREKARQMFYHGYDNYLKHAYPYDELKPLSCQGQDTWGSYSXXXXXXXXXXXXMGNVTEFERVAKLLVSTLSFDQDINVSVFETNIRVVGGLLSAHLLSHFSKLELDPGWPCEGPLLKLAVDAAEKLLPAFQTNTSMPYGTINLKNGVPKGETPITCTASIGTFVLEFGTITYLTGDERFLKAALDALDGLWKAKSKIGLVGNHIDVQKGFWTATDAGIGAGVDSYFEYLVKGASLFSDPKLLEMFNDLNKSIQKYLKYHDWYVWTNMDSGKITLPIFQSLEAFWPGVQVLLGNVGEASRTFYNYYSVWKQYGGTPEFYTIAYNKVFPKREGYPLRPELIESTMYLYQATKDPFFLEVGRDIIDGIEQIARTPCGYATIKNVETHQLDDRMESFFLAETTKYLYLLFDEDNFIHKINQNQSHYQPKDST--QCFPASSGFIFNTEAHPLDLASLYCCKHKHKQDSLYFTREKLKPQYGCKR-RPKYQK 1650
YRE+ + MFYH YD+YL++A+P+DEL+PL+C G DTWGS+SLTL+DALDTLL++GNV+EF+RV ++L ++ FD D+N SVFETNIRVVGGLLSAHLLS + +E++ GWPC GPLL++A +AA KLLPAFQT T MPYGT+NL +GV GETP+TCTA IGTF++EF T++ LTGD F A AL LW+++S IGLVGNHIDV G W A DAGIGAGVDSYFEYLVKGA L D KL+ MF + NK+I+ Y ++ DWY+W M G +++P+FQSLEA+WPG+Q L+G++ A RTF NYY+VWKQ+GG PEFY I KREGYPLRPELIES MYLY+AT DP LE+GRD ++ IE+I++ CG+ATIK++ H+LD+RMESFFLAET KYLYLLFD NFIH N S + + +C + G+IFNTEAHP+D A+L+CC+ ++ + + ++ Y KR R K+QK
Sbjct: 35 YRERVKAMFYHAYDSYLENAFPFDELRPLTCDGHDTWGSFSLTLIDALDTLLILGNVSEFQRVVEVLQDSVDFDIDVNASVFETNIRVVGGLLSAHLLSKKAGVEVEAGWPCSGPLLRMAEEAARKLLPAFQTPTGMPYGTVNLLHGVNPGETPVTCTAGIGTFIVEFATLSSLTGDPVFEDVARVALMRLWESRSDIGLVGNHIDVLTGKWVAQDAGIGAGVDSYFEYLVKGAILLQDKKLMAMFLEYNKAIRNYTRFDDWYLWVQMYKGTVSMPVFQSLEAYWPGLQSLIGDIDNAMRTFLNYYTVWKQFGGLPEFYNIPQGYTVEKREGYPLRPELIESAMYLYRATGDPTLLELGRDAVESIEKISKVECGFATIKDLRDHKLDNRMESFFLAETVKYLYLLFDPTNFIH---NNGSTFDAVITPYGECILGAGGYIFNTEAHPIDPAALHCCQRLKEEQ--WEVEDLMREFYSLKRSRSKFQK 517 The following BLAST results are available for this feature:
BLAST of TCONS_00072869 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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