TCONS_00072869-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00072869-protein
Unique Name	TCONS_00072869-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	533

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00072869-protein ID=TCONS_00072869-protein|Name=TCONS_00072869-protein|organism=Clytia hemisphaerica|type=polypeptide|length=533bp
MQSCAYLIAICILFACTSAWMDKEERLKYREKARQMFYHGYDNYLKHAYP
YDELKPLSCQGQDTWGSYSLTLVDALDTLLVMGNVTEFERVAKLLVSTLS
FDQDINVSVFETNIRVVGGLLSAHLLSHFSKLELDPGWPCEGPLLKLAVD
AAEKLLPAFQTNTSMPYGTINLKNGVPKGETPITCTASIGTFVLEFGTIT
YLTGDERFLKAALDALDGLWKAKSKIGLVGNHIDVQKGFWTATDAGIGAG
VDSYFEYLVKGASLFSDPKLLEMFNDLNKSIQKYLKYHDWYVWTNMDSGK
ITLPIFQSLEAFWPGVQVLLGNVGEASRTFYNYYSVWKQYGGTPEFYTIA
YNKVFPKREGYPLRPELIESTMYLYQATKDPFFLEVGRDIIDGIEQIART
PCGYATIKNVETHQLDDRMESFFLAETTKYLYLLFDEDNFIHKINQNQSH
YQPKDSTQCFPASSGFIFNTEAHPLDLASLYCCKHKHKQDSLYFTREKLK
PQYGCKRRPKYQKFYAFGNYKEDKYDLFDKPPS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_045220	XLOC_045220	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00072869	TCONS_00072869	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001382	Glyco_hydro_47

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding
GO:0004571	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0004571	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001382	Glycoside hydrolase family 47	PRINTS	PR00747	GLYHDRLASE47	coord: 69..83 score: 59.68 coord: 248..265 score: 50.0 coord: 421..441 score: 66.89 coord: 157..176 score: 44.76 coord: 36..56 score: 48.07 coord: 106..124 score: 69.42 coord: 305..321 score: 35.57 coord: 362..386 score: 47.43
IPR001382	Glycoside hydrolase family 47	PFAM	PF01532	Glyco_hydro_47	coord: 36..476 e-value: 2.9E-112 score: 375.8
IPR001382	Glycoside hydrolase family 47	SUPERFAMILY	48225	Seven-hairpin glycosidases	coord: 24..476
None	No IPR available	GENE3D	1.50.10.10		coord: 14..490 e-value: 5.5E-159 score: 529.4

Blast

[Close]

BLAST of TCONS_00072869-protein vs. Swiss-Prot (Human)
Match: EDEM2 (ER degradation-enhancing alpha-mannosidase-like protein 2 OS=Homo sapiens GN=EDEM2 PE=1 SV=2)

HSP 1 Score: 612.453 bits (1578), Expect = 0.000e+0
Identity = 288/488 (59.02%), Postives = 371/488 (76.02%), Query Frame = 0

Query:   29 YREKARQMFYHGYDNYLKHAYPYDELKPLSCQGQDTWGSYSLTLVDALDTLLVMGNVTEFERVAKLLVSTLSFDQDINVSVFETNIRVVGGLLSAHLLSHFSKLELDPGWPCEGPLLKLAVDAAEKLLPAFQTNTSMPYGTINLKNGVPKGETPITCTASIGTFVLEFGTITYLTGDERFLKAALDALDGLWKAKSKIGLVGNHIDVQKGFWTATDAGIGAGVDSYFEYLVKGASLFSDPKLLEMFNDLNKSIQKYLKYHDWYVWTNMDSGKITLPIFQSLEAFWPGVQVLLGNVGEASRTFYNYYSVWKQYGGTPEFYTIAYNKVFPKREGYPLRPELIESTMYLYQATKDPFFLEVGRDIIDGIEQIARTPCGYATIKNVETHQLDDRMESFFLAETTKYLYLLFDEDNFIHKINQNQSHYQPKDST--QCFPASSGFIFNTEAHPLDLASLYCCKHKHKQDSLYFTREKLKPQYGCKR-RPKYQK 513
            YRE+ + MFYH YD+YL++A+P+DEL+PL+C G DTWGS+SLTL+DALDTLL++GNV+EF+RV ++L  ++ FD D+N SVFETNIRVVGGLLSAHLLS  + +E++ GWPC GPLL++A +AA KLLPAFQT T MPYGT+NL +GV  GETP+TCTA IGTF++EF T++ LTGD  F   A  AL  LW+++S IGLVGNHIDV  G W A DAGIGAGVDSYFEYLVKGA L  D KL+ MF + NK+I+ Y ++ DWY+W  M  G +++P+FQSLEA+WPG+Q L+G++  A RTF NYY+VWKQ+GG PEFY I       KREGYPLRPELIES MYLY+AT DP  LE+GRD ++ IE+I++  CG+ATIK++  H+LD+RMESFFLAET KYLYLLFD  NFIH    N S +    +   +C   + G+IFNTEAHP+D A+L+CC+   ++   +   + ++  Y  KR R K+QK
Sbjct:   35 YRERVKAMFYHAYDSYLENAFPFDELRPLTCDGHDTWGSFSLTLIDALDTLLILGNVSEFQRVVEVLQDSVDFDIDVNASVFETNIRVVGGLLSAHLLSKKAGVEVEAGWPCSGPLLRMAEEAARKLLPAFQTPTGMPYGTVNLLHGVNPGETPVTCTAGIGTFIVEFATLSSLTGDPVFEDVARVALMRLWESRSDIGLVGNHIDVLTGKWVAQDAGIGAGVDSYFEYLVKGAILLQDKKLMAMFLEYNKAIRNYTRFDDWYLWVQMYKGTVSMPVFQSLEAYWPGLQSLIGDIDNAMRTFLNYYTVWKQFGGLPEFYNIPQGYTVEKREGYPLRPELIESAMYLYRATGDPTLLELGRDAVESIEKISKVECGFATIKDLRDHKLDNRMESFFLAETVKYLYLLFDPTNFIH---NNGSTFDAVITPYGECILGAGGYIFNTEAHPIDPAALHCCQRLKEEQ--WEVEDLMREFYSLKRSRSKFQK 517

The following BLAST results are available for this feature:

BLAST of TCONS_00072869-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00072869-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
EDEM2	0.000e+0	59.02	ER degradation-enhancing alpha-mannosidase-like pr...	[more]

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TCONS_00072869-protein (polypeptide) - C. hemisphaerica