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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072835 ID=TCONS_00072835|Name=TCONS_00072835|organism=Clytia hemisphaerica|type=transcript|length=2146bp
aatagaaaatatattttaaataacCGGTAAAATTAATTCATTTAATATTT
CCCTTTTCCAAACCTCTGAATGCACCcatgaaaattgaatagaaaCTAAT
AGACCGAATCTGAGAGATAGAAATCTCGGTTTTACAAAGAATTGTAGCTA
TAAAAATAACTGTTTCGATAAATGTGTTCATCTAGAACATGCCATTGCCA
CAGCGACTCGTTTGGCGAACGATTCTTTCCTTGCAAGGTTCCACTGGTTG
ACAAAAAATTGTacataaaaagtgaaatgctCTTGCGTCATCAATTTTGC
AGATGTTTTAATGCATTGCAAGAAAGCATTAAATTGCTCACAGATGGATG
TGTTCAAGCCATTAAAGCCAAGTAATCGATTTGACTTGAACACATCAGAA
CACTTATGTCCATATCCATGGAAAATGTCGTGGAAAAAACGTGTGTCCTG
AAAAAAGCCACTTTCTCGGTTTCGACAATATTCTTCAAGCGAGCAAGCAA
AATCGTAAAAAATCTCATACGGCGCCTGCTTCATGTACGCGTATAATGAT
GCCGCAGCATCTTTTCTGCCCTCAGCATGGGGTATAATATGATACCCATA
ACAATGCCCGTGGGCTGGGCAAAACCACAAAAACAAGTAAGAGGTCCCTT
TTGAagtggggaaaatttttgagcACACGTCACTGTCAGGCAAATCATCA
AAGTtagattttttgtcttttttgtcttTATCGATATCAAACTTTCTGGT
TTGTCTTATTTGGGAGCCGTCGTGAAAGTAATACGCTCTACCATCTCTCG
GTGGGTTGTATTTCTTAACCGATTCTGGCTCTTTCGGGGATATATCACAG
CTGTTTAGTTCTTTCCTAAGGGTAGTCagatacttgaagaattcaatTAC
GTATTTTTTAGGACAAGATCCTTTGGAAAGCGATGTTGCAATAAGTAGCC
AATCGCCTAGCTCTGGAAAGAAAAATTTGGAAGATCGATGGAACTCTTCA
ACTACACGCCACAGATCGCCGTTCTCCTCGATTATGTTTGCTGATGCCAT
CATATCATTCAACCGATCAAACTGGTCCAAGTACCGTCTAGGGATCAGGC
AAGAACTCTCCATCCGTAGCCTGTTCAATCGGTGTCACATTGATTTGTTT
GAAGGTTATTCCAATTTTCGTCCCATCGGCGGCTAAGTATCTTGGATTCG
GACCACAGCTTGGACACTGTTGGATAAAATCCAAATTCATAGCTGAAGCC
CAACTGAACCACCACTTTATGAGCGTGTTCCGTGACAAGAACTCGCATTG
CGACTTGTAATCCTTATATCTATTCTTCAGGACTTTAACGAATCCAGAAA
AGGTTTGTTTACTGGTCATTACCAGATCGACAAATTCCCAACCGATTTCA
TAACCACAGGCAACAGTCGAACTTGAACGAAACAAGCTGTCTTCGGAGCC
ATCGTAACCACGAAAACATCTTTCTGACAAGCATTTTCGTTCAAACAAAC
GTGCCTTTGAAGCCCCAACAGTTGAATAAACTACCGTTTCTCCACGAGGC
ATGATATGACCGTCCGGATATTCATCGTTATACCAACCACTCTAACAAGA
AAAAGATTATACCTTTTAAAGACGAAATCAATGATATTAAAAGGAACTTC
ATTGAACTTAAAGTAGACGATACTAAACTTAGAGTTGTAGATTTTCAGCA
TTTATATCCAATATCGCCACCCTTAAAGGGTTCCTACTTCTTTGCCGACC
GCTTTAAACAGATGAAACGAAAGTGAATAACCGGCGTTTTAACCCCGTTC
AATATCtaatagaaattgaatttacCTCGCATCCACAGTTACCATCCTTA
GATGGGATCAACTTTATCTCCTGTCCAAGTAAAATTTGTATGGCTCTTTT
TTTTATGTTGTCGCGGTAAATTTCGTCTCTGGAATCATTGACACGCAACT
GACTAGGGGCTTTGTCGTGGAATTTCCACTGACCATTTTCCTCGTCGAAA
ACCTTCTCCCActaaaatagaaagaaaatgaTTGCCGGTTAACACTATTA
TAAACTTACAGTATAAAGCCCCCATATGTCGGTATACACTCTAATCCGCA
GGAAAATATATTAGTTAATTATTTCGTCAATATTCATAGACATAGa Run BLAST on NCBI transcript from alignment at scaffold_86:199385..201817+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072835 ID=TCONS_00072835|Name=TCONS_00072835|organism=Clytia hemisphaerica|type=transcript|length=2433bp|location=Sequence derived from alignment at scaffold_86:199385..201817+ (Clytia hemisphaerica)
aatagaaaatatattttaaataacCGGTAAAATTAATTCATTTAATATTT
CCCTTTTCCAAACCTCTGAATGCACCcatgaaaattgaatagaaaCTAAT
AGACCGAATCTGAGAGATAGAAATCTCGGTTTTACAAAGAATTGTAGCTA
TAAAAATAACTGTTTCGATAAATGTGTTCATCTAGAACATGCCATTGCCA
CAGCGACTCGTTTGGCGAACGATTCTTTCCTTGCAAGGTTCCACTGGTTG
ACAAAAAATTGTacataaaaagtgaaatgctCTTGCGTCATCAATTTTGC
AGATGTTTTAATGCATTGCAAGAAAGCATTAAATTGCTCACAGATGGATG
TGTTCAAGCCATTAAAGCCAAGTAATCGATTTGACTTGAACACATCAGAA
CACTTATGTCCATATCCATGGAAAATGTCGTGGAAAAAACGTGTGTCCTG
AAAAAAGCCACTTTCTCGGTTTCGACAATATTCTTCAAGCGAGCAAGCAA
AATCGTAAAAAATCTCATACGGCGCCTGCTTCATGTACGCGTATAATGAT
GCCGCAGCATCTTTTCTGCCCTCAGCATGGGGTATAATATGATACCCATA
ACAATGCCCGTGGGCTGGGCAAAACCACAAAAACAAGTAAGAGGTCCCTT
TTGAagtggggaaaatttttgagcACACGTCACTGTCAGGCAAATCATCA
AAGTtagattttttgtcttttttgtcttTATCGATATCAAACTTTCTGGT
TTGTCTTATTTGGGAGCCGTCGTGAAAGTAATACGCTCTACCATCTCTCG
GTGGGTTGTATTTCTTAACCGATTCTGGCTCTTTCGGGGATATATCACAG
CTGTTTAGTTCTTTCCTAAGGGTAGTCagatacttgaagaattcaatTAC
GTATTTTTTAGGACAAGATCCTTTGGAAAGCGATGTTGCAATAAGTAGCC
AATCGCCTAGCTCTGGAAAGAAAAATTTGGAAGATCGATGGAACTCTTCA
ACTACACGCCACAGATCGCCGTTCTCCTCGATTATGTTTGCTGATGCCAT
CATATCATTCAACCGATCAAACTGGTCCAAGTACCGTCTAGGGATCAGGT
TGGTTAAGCTAGTATCCTTTGTCAGAATAGCAAGAGATTTACTGAGTGCT
ACTTTTTCGAGATTCGACATACCAGGCTCGAATAATTTTTCTGTGAGTAG
ACGCACAACTGGGATACTTGAATCGGCTAATATTTCTTTGGTTTTACCCA
ATTCTTCTCCAGAAAGCTTAAGTTTTCCACAAAAATGCTTCACTAACGAA
TGGAGAGCATCGTTGACAACTTTTCTGTCCTTTTTACTGTTTGTGTTGTT
GATAAAAGTTCTATCATACCTCCTTTTATTTGTAGGCAAGAACTCTCCAT
CCGTAGCCTGTTCAATCGGTGTCACATTGATTTGTTTGAAGGTTATTCCA
ATTTTCGTCCCATCGGCGGCTAAGTATCTTGGATTCGGACCACAGCTTGG
ACACTGTTGGATAAAATCCAAATTCATAGCTGAAGCCCAACTGAACCACC
ACTTTATGAGCGTGTTCCGTGACAAGAACTCGCATTGCGACTTGTAATCC
TTATATCTATTCTTCAGGACTTTAACGAATCCAGAAAAGGTTTGTTTACT
GGTCATTACCAGATCGACAAATTCCCAACCGATTTCATAACCACAGGCAA
CAGTCGAACTTGAACGAAACAAGCTGTCTTCGGAGCCATCGTAACCACGA
AAACATCTTTCTGACAAGCATTTTCGTTCAAACAAACGTGCCTTTGAAGC
CCCAACAGTTGAATAAACTACCGTTTCTCCACGAGGCATGATATGACCGT
CCGGATATTCATCGTTATACCAACCACTCTAACAAGAAAAAGATTATACC
TTTTAAAGACGAAATCAATGATATTAAAAGGAACTTCATTGAACTTAAAG
TAGACGATACTAAACTTAGAGTTGTAGATTTTCAGCATTTATATCCAATA
TCGCCACCCTTAAAGGGTTCCTACTTCTTTGCCGACCGCTTTAAACAGAT
GAAACGAAAGTGAATAACCGGCGTTTTAACCCCGTTCAATATCtaataga
aattgaatttacCTCGCATCCACAGTTACCATCCTTAGATGGGATCAACT
TTATCTCCTGTCCAAGTAAAATTTGTATGGCTCTTTTTTTTATGTTGTCG
CGGTAAATTTCGTCTCTGGAATCATTGACACGCAACTGACTAGGGGCTTT
GTCGTGGAATTTCCACTGACCATTTTCCTCGTCGAAAACCTTCTCCCAct
aaaatagaaagaaaatgaTTGCCGGTTAACACTATTATAAACTTACAGTA
TAAAGCCCCCATATGTCGGTATACACTCTAATCCGCAGGAAAATATATTA
GTTAATTATTTCGTCAATATTCATAGACATAGa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072835-exon-scaffold_86-1491911889:199385..200482 | TCONS_00072835-exon-scaffold_86-1491911889:199385..200482 | Clytia hemisphaerica | exon |
| TCONS_00072835-exon-scaffold_86-1510915933:199385..200482 | TCONS_00072835-exon-scaffold_86-1510915933:199385..200482 | Clytia hemisphaerica | exon |
| TCONS_00072835-exon-scaffold_86-1575043694:199385..200482 | TCONS_00072835-exon-scaffold_86-1575043694:199385..200482 | Clytia hemisphaerica | exon |
| TCONS_00072835-exon-scaffold_86-1491911889:200770..201817 | TCONS_00072835-exon-scaffold_86-1491911889:200770..201817 | Clytia hemisphaerica | exon |
| TCONS_00072835-exon-scaffold_86-1510915933:200770..201817 | TCONS_00072835-exon-scaffold_86-1510915933:200770..201817 | Clytia hemisphaerica | exon |
| TCONS_00072835-exon-scaffold_86-1575043694:200770..201817 | TCONS_00072835-exon-scaffold_86-1575043694:200770..201817 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:199385..201817 + |
Blast
The following BLAST results are available for this feature:
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