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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072833 ID=TCONS_00072833|Name=TCONS_00072833|organism=Clytia hemisphaerica|type=transcript|length=2493bp
gaaaaatttataaaaaatgggTTCAGTGCATTCGCTACAGCGTAATGAGC
CATTGAAAAAAGATCAGGTGAAATATGTTAAAACGATTGCTTATTATGTT
CAAGATTTGAAACACTTACCTCGAGGAATGACCAAAGTCTTGGATCACCT
TTATCTTGGTAATTGGCAAGATGCAACCGATGTTGAAAAGCTACGAGAAG
AATCACACACATTATCAACACAGTCGATGAAGGGGAAAAAAATACCAGTA
CGAAGAAAGATTTTTACGGACCAGATATCGAATATATGGGATTTAACTCG
CAAGATGATGAAAATTACGAAATTATGAAACATTTTGAGGATGTTCACAA
ATTCATAGAAAACGCGAAGGCGTCAGGTGGAAAATGTTTACNAAACATTT
TGAGGATGTTCACAAATTCATAGAAAACGCGAAGGCGTCAGGCGGAAAGT
GTTTAATTCACTGCATGGCGGGTATCAATAGAAGTGGTTGCCTAGCAACT
GCGCATGTTATGTTAGATCAAAATATTGGACCAATAACAGCCGCACGATT
CGTTTATGAGAAAAGAGGTGTGCTGCTTTCAAATAATGGGTTTATAGAAC
GTTTAGTTAAATTTGCTGTCGATCGTGATTTGCTTTATTTAGATAAAGAC
AATATACTTCCTCTGTATGGGAACCACTGAATATTACAACATCGTTTAAA
CGTAAAAGAATGGTAGTAGAATCGAGGTTATATCCAGCAATTGTATGGAA
ATATTTAGTTTCCTAAACCACAAAATTCGTTGCATAGAGAAACTGTAATT
GCATTAcatttggacctaccccggtggagctgctataaatttacaaattt
tcagaTGCCTAAGGccaaaaaggaaatttgaattttacgaGCTAGAAAAT
CAGACGAATTTATTTATACCGTTGCGGACGCAGTCTAGTGAAAGGGAAAC
GTAAGACGGAGTCAGACTGAGTCCTGATAAAACGAATGTATAttcatgct
ttttttataagaatagtgtactttggatgagggtcaagtattcttaagaa
agtgccaaaattgagggtgaaatattcttaacatatatacttgacttttt
tacaaacatgagaaatgatcaatttgagagttttggacttttgagtgaac
atttgggttaaaattacattccttcctcaaaactttatctctaacaaagg
aagtagttttttctgttaaccaaatacaaattgactgtattcttatcaaa
ctCTGTGAAATGCAAtgcaaaatattcttataaagcgTGTTTACAGACAT
TTTGAGTTATAAATTGGTTTTAAGAATCGTACGTTTCCTTTAATGATCAG
TTTCCTTTGTGTGATTTTCCTCGACTTCCTCTTCGTGGAAACTTGTTGCC
TGAACATTTCTTACAAACTTCATAAACGAAATGGATCTGATTGCAATTGA
TATCATGAACGGAACAGGCCCATCATACACATATCATCACCATATGTGAC
ATTGCAAATATGACATCCGAGACTGCGGTAATAGAACCAGCGCCTGAGAA
TACCAGTGACCATCTTCCAGTTTCCACTTCCTTATTTCTCGAGAACACAT
CAGATCATCATCAACAGCAAACAACACCTCCGAGATGGTCTCAATTACCC
AACTATCTTTGGTCCAATGAAAGATTTCTGGAGCTCTACAAAAAAAGGTT
GCTGAGGCAATGCCACTCAAATCAAGCggaaatattaacaaaaatttAGA
CACTCTCTCTGATCTACTTAAGACTGTGCTAGTAAAAGCTATACAGAGAT
AGAAAGCAATTTCCGGAAAGTCGAACCAAAACAGTGGTGGAATCAGGATC
TAACAAGGTGCAGAAATACACTCAAACAAAACTTCAATATATGGAGAGAC
AATGGTTTCGAAAAGGATATGAAGAATTCAGTGTATTATGCCCGATATGC
GTTTGCCAGGAAAATATTTCGTTATCTCATGCGCCACTACAAAAACCAAG
CGACGGCCAAATACTACGTAAACATTGATcggttaaagaaaataaacccT
AGACACTACTGGAAAAAGATTATACTTAACAAAACATCAGCAGAAAAACT
ATACACAATTAACAACAAAACGTCAACAGAGGAGATCACAGAAGAATTTG
GCCATCATTTCCAATCCGTTTTGAACGAACCTAGAGTCCAACATATTGAC
AATGAATACGCAAACGCTCAATTACTGTGAATCCTACAGGAACTACCATA
CAACTCAGAATTCCACATAACCGAGATCGAAGTAGAGAACGCCATAAGTA
GACTCAACAAAAACAAGACTATGGACCCATACCATCTGAAAGCAGAACAC
TTCGTACATGCCTCGAGTAACATTTTCATAACAGAAATAACTAAAATCAT
CAATACTGTCTTCAAAACTAGAACACCAGAAGCTCTAAGTGTATCAATAA
TAATTCCAATCTTACCGTAAATCTCTTAAGTACTGATTCTAAT Run BLAST on NCBI transcript from alignment at scaffold_86:171480..176137+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072833 ID=TCONS_00072833|Name=TCONS_00072833|organism=Clytia hemisphaerica|type=transcript|length=4658bp|location=Sequence derived from alignment at scaffold_86:171480..176137+ (Clytia hemisphaerica)
gaaaaatttataaaaaatgggTTCAGTGCATTCGCTACAGCGTAATGAGC
CATTGAAAAAAGATCAGGTGAAATATGTTAAAACGATTGCTTATTATGTT
CAAGATTTGAAACACTTACCTCGAGGAATGACCAAAGTCTTGGATCACCT
TTATCTTGGTAATTGGCAAGATGCAACCGATGTTGAAAAGCTACGAGAAG
TAGGtgagaaatcattttctttttcaaaaacctatGCTTTATCTTCTCAA
GGAATTATCATAGGTGGTTTTAGACGCTGTCGAACTTGTCAGGGGAAGAG
ATTTGTTAATTAGTTAGATTAATTGCATTTTCATTGTCAatacgagcgtt
gcactccttcgcatgtttccgacgtacttgctctactttcttaaatccgc
cagtggCCATGGGTCTGCCTTGGAACTTTACCAAGGCAGGGCTAGTGAAA
ATGAAATCTAAAGCCTCAGTAAAATAAAAGctcatttctttcttttatca
aTTTAGCCACTTAACCAAGTGCTACTGGCATCATTTGCTTGATCTTTTCG
GTCCTATATCGCtagacacccctttctcacagacccggtaggatattttc
agccagtggggataaaataacggactaaaagtcgacggggattgatattc
ccatattttcatggctggggatttcatttcttttgttttcaagtcagcaA
ATTCATGGcaatttatttgattattttcaatgggacAGAAATTAGAGGAt
cattttccaccggggacgatattttggccattttttccattCGGAAGGGT
TCCCAGTAGATCTGTGGGAAGGGGGTGTCACAGGTCATAATTTAAGAGCA
CTTCGACTCATGGCGCTCTGTTTTTTACCCTACAATTAAAAGGCAGTTAA
GATTGCTTTTTTTCTTAGTTGTGGTTGAAATCTGGCATATTTCTTCCTCG
GGTATtttatctgggggtgttttttttttctccaaatagtaggggccaag
cctggggttctGTGACATCTTTTTTTACGACCTAGCCGGATTAGGCCTGG
AAAAACTTTTCATGATCAAAATAGTgccgccataggcaaaactgcaaggg
aaaataaggggtagagaaatagcttattttcgcgtgaaattctgagcaaa
aactttattacaacaactctctgactaaaacacacagtCGGGGTACCTAA
GGGCACTCCCGAATGGTCTCATGAAGCttgtaaatgttttttaggttttt
tcgaagcatttcgATATGGAAAATAAGATGGGGTATGGTCAGATGGTCCC
ACTtgttgaaaaatcgaaaaatttcgaaaaaaactctttttaccaaattt
tcatgattttgatgacgtcacagaaaTAAGAATTTAAATAACTTCTATTA
GGAGAAAGATTTTCACCATAAAGGTGTAAATCAATAAAAGGAAGCGAtcc
acgaaaaaaaaattaaaattctttgctgacgtcagcaaattttgtgaaaa
aaccgTTTCGGCtaaaatatgctgacgtcagcaaatgattttaaatttcC
TAGGGCGAATATCTAGAGGTCTTCttttcgtttttcaaaaatttagattt
ttgaggCCTGTGCATAGGAGTTTTTCGCCAAACCTAGGCTGAATAAGGAA
TAAATATTTATGGTTTCAATAATGAGTTTTTAAGTTAGATTTTCTTGCTA
CAatcttaaaataatttgaagctattgaagttgagcccagtgcgttaaGC
GCATTCGACTATTTTTAATCGAATTCGAGTTACATAAACcttttcattaa
aataataaattacgtcacgaaaatCACTTGCCTtctattcaaacaattac
catcgTGGTGAGTATGTCCTTTGAGACAGTAAATGACTTTGTTATGAATA
GGAATCAGTTTTAATAAAATGCGCTGGGAGTCAATCACCATAGGAATAAT
TTCAAAAGGAGGCAAGTGAttttcgtaacgtaatttatgaaaaagtctat
tgCTAGCgtgcacctcactaaaaaccgggatttttcatctcgtctcttag
tgagttccactttgacgagtttcgaaaaatagaagcctttcaagtgcttt
gacgcaaatttgattattttgctactgcaggagcttcgaaagttaaaagt
gacgtcaaaaaatcgaatgtttagagcccgaaaacctgggctcaaaacat
tcaaaaaagtcgcaaagtggaatagacgtgtAAAAAAACGCgagtgacgt
ctagtataggctagtcTATTGCGTGCttgttaaaaaagttaaaagttctG
CGTGAGTTGGATATTAGCCACTGATATATCAATGATCTGGATTTTTCACC
ATCTTATTTTCCAGGAATCACACACATTATCAACACAGTCGATGAAGGGG
AAAAAAATACCAGTACGAAGAAAGATTTTTACGGACCAGATATCGAATAT
ATGGGATTTAACTCGCAAGATGATGAAAATTACGAAATTATGAAACATTT
TGAGGATGTTCACAAATTCATAGAAAACGCGAAGGCGTCAGGTGGAAAAT
GTTTACNAAACATTTTGAGGATGTTCACAAATTCATAGAAAACGCGAAGG
CGTCAGGCGGAAAGTGTTTAATTCACTGCATGGCGGGTATCAATAGAAGT
GGTTGCCTAGCAACTGCGCATGTTATGTTAGATCAAAATATTGGACCAAT
AACAGCCGCACGATTCGTTTATGAGAAAAGAGGTGTGCTGCTTTCAAATA
ATGGGTTTATAGAACGTTTAGTTAAATTTGCTGTCGATCGTGATTTGCTT
TATTTAGATAAAGACAATATACTTCCTCTGTATGGGAACCACTGAATATT
ACAACATCGTTTAAACGTAAAAGAATGGTAGTAGAATCGAGGTTATATCC
AGCAATTGTATGGAAATATTTAGTTTCCTAAACCACAAAATTCGTTGCAT
AGAGAAACTGTAATTGCATTAcatttggacctaccccggtggagctgcta
taaatttacaaattttcagaTGCCTAAGGccaaaaaggaaatttgaattt
tacgaGCTAGAAAATCAGACGAATTTATTTATACCGTTGCGGACGCAGTC
TAGTGAAAGGGAAACGTAAGACGGAGTCAGACTGAGTCCTGATAAAACGA
ATGTATAttcatgctttttttataagaatagtgtactttggatgagggtc
aagtattcttaagaaagtgccaaaattgagggtgaaatattcttaacata
tatacttgacttttttacaaacatgagaaatgatcaatttgagagttttg
gacttttgagtgaacatttgggttaaaattacattccttcctcaaaactt
tatctctaacaaaggaagtagttttttctgttaaccaaatacaaattgac
tgtattcttatcaaactCTGTGAAATGCAAtgcaaaatattcttataaag
cgTGTTTACAGACATTTTGAGTTATAAATTGGTTTTAAGAATCGTACGTT
TCCTTTAATGATCAGTTTCCTTTGTGTGATTTTCCTCGACTTCCTCTTCG
TGGAAACTTGTTGCCTGAACATTTCTTACAAACTTCATAAACGAAATGGA
TCTGATTGCAATTGATATCATGAACGGAACAGGCCCATCATACACATATC
ATCACCATATGTGACATTGCAAATATGACATCCGAGACTGCGGTAATAGA
ACCAGCGCCTGAGAATACCAGTGACCATCTTCCAGTTTCCACTTCCTTAT
TTCTCGAGAACACATCAGATCATCATCAACAGCAAACAACACCTCCGAGA
TGGTCTCAATTACCCAACTATCTTTGGTCCAATGAAAGATTTCTGGAGCT
CTACAAAAAAAGGTTGCTGAGGCAATGCCACTCAAATCAAGCggaaatat
taacaaaaatttAGACACTCTCTCTGATCTACTTAAGACTGTGCTAGTAA
AAGCTATACAGAGATAGAAAGCAATTTCCGGAAAGTCGAACCAAAACAGT
GGTGGAATCAGGATCTAACAAGGTGCAGAAATACACTCAAACAAAACTTC
AATATATGGAGAGACAATGGTTTCGAAAAGGATATGAAGAATTCAGTGTA
TTATGCCCGATATGCGTTTGCCAGGAAAATATTTCGTTATCTCATGCGCC
ACTACAAAAACCAAGCGACGGCCAAATACTACGTAAACATTGATcggtta
aagaaaataaacccTAGACACTACTGGAAAAAGATTATACTTAACAAAAC
ATCAGCAGAAAAACTATACACAATTAACAACAAAACGTCAACAGAGGAGA
TCACAGAAGAATTTGGCCATCATTTCCAATCCGTTTTGAACGAACCTAGA
GTCCAACATATTGACAATGAATACGCAAACGCTCAATTACTGTGAATCCT
ACAGGAACTACCATACAACTCAGAATTCCACATAACCGAGATCGAAGTAG
AGAACGCCATAAGTAGACTCAACAAAAACAAGACTATGGACCCATACCAT
CTGAAAGCAGAACACTTCGTACATGCCTCGAGTAACATTTTCATAACAGA
AATAACTAAAATCATCAATACTGTCTTCAAAACTAGAACACCAGAAGCTC
TAAGTGTATCAATAATAATTCCAATCTTACCGTAAATCTCTTAAGTACTG
ATTCTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072833-exon-scaffold_86-1491911889:171480..171678 | TCONS_00072833-exon-scaffold_86-1491911889:171480..171678 | Clytia hemisphaerica | exon |
| TCONS_00072833-exon-scaffold_86-1510915933:171480..171678 | TCONS_00072833-exon-scaffold_86-1510915933:171480..171678 | Clytia hemisphaerica | exon |
| TCONS_00072833-exon-scaffold_86-1575043694:171480..171678 | TCONS_00072833-exon-scaffold_86-1575043694:171480..171678 | Clytia hemisphaerica | exon |
| TCONS_00072833-exon-scaffold_86-1491911889:173844..176137 | TCONS_00072833-exon-scaffold_86-1491911889:173844..176137 | Clytia hemisphaerica | exon |
| TCONS_00072833-exon-scaffold_86-1510915933:173844..176137 | TCONS_00072833-exon-scaffold_86-1510915933:173844..176137 | Clytia hemisphaerica | exon |
| TCONS_00072833-exon-scaffold_86-1575043694:173844..176137 | TCONS_00072833-exon-scaffold_86-1575043694:173844..176137 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:171480..176137 + |
Blast
The following BLAST results are available for this feature:
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