TCONS_00072833 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072833
Unique NameTCONS_00072833
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2493

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072833 ID=TCONS_00072833|Name=TCONS_00072833|organism=Clytia hemisphaerica|type=transcript|length=2493bp
gaaaaatttataaaaaatgggTTCAGTGCATTCGCTACAGCGTAATGAGC
CATTGAAAAAAGATCAGGTGAAATATGTTAAAACGATTGCTTATTATGTT
CAAGATTTGAAACACTTACCTCGAGGAATGACCAAAGTCTTGGATCACCT
TTATCTTGGTAATTGGCAAGATGCAACCGATGTTGAAAAGCTACGAGAAG
AATCACACACATTATCAACACAGTCGATGAAGGGGAAAAAAATACCAGTA
CGAAGAAAGATTTTTACGGACCAGATATCGAATATATGGGATTTAACTCG
CAAGATGATGAAAATTACGAAATTATGAAACATTTTGAGGATGTTCACAA
ATTCATAGAAAACGCGAAGGCGTCAGGTGGAAAATGTTTACNAAACATTT
TGAGGATGTTCACAAATTCATAGAAAACGCGAAGGCGTCAGGCGGAAAGT
GTTTAATTCACTGCATGGCGGGTATCAATAGAAGTGGTTGCCTAGCAACT
GCGCATGTTATGTTAGATCAAAATATTGGACCAATAACAGCCGCACGATT
CGTTTATGAGAAAAGAGGTGTGCTGCTTTCAAATAATGGGTTTATAGAAC
GTTTAGTTAAATTTGCTGTCGATCGTGATTTGCTTTATTTAGATAAAGAC
AATATACTTCCTCTGTATGGGAACCACTGAATATTACAACATCGTTTAAA
CGTAAAAGAATGGTAGTAGAATCGAGGTTATATCCAGCAATTGTATGGAA
ATATTTAGTTTCCTAAACCACAAAATTCGTTGCATAGAGAAACTGTAATT
GCATTAcatttggacctaccccggtggagctgctataaatttacaaattt
tcagaTGCCTAAGGccaaaaaggaaatttgaattttacgaGCTAGAAAAT
CAGACGAATTTATTTATACCGTTGCGGACGCAGTCTAGTGAAAGGGAAAC
GTAAGACGGAGTCAGACTGAGTCCTGATAAAACGAATGTATAttcatgct
ttttttataagaatagtgtactttggatgagggtcaagtattcttaagaa
agtgccaaaattgagggtgaaatattcttaacatatatacttgacttttt
tacaaacatgagaaatgatcaatttgagagttttggacttttgagtgaac
atttgggttaaaattacattccttcctcaaaactttatctctaacaaagg
aagtagttttttctgttaaccaaatacaaattgactgtattcttatcaaa
ctCTGTGAAATGCAAtgcaaaatattcttataaagcgTGTTTACAGACAT
TTTGAGTTATAAATTGGTTTTAAGAATCGTACGTTTCCTTTAATGATCAG
TTTCCTTTGTGTGATTTTCCTCGACTTCCTCTTCGTGGAAACTTGTTGCC
TGAACATTTCTTACAAACTTCATAAACGAAATGGATCTGATTGCAATTGA
TATCATGAACGGAACAGGCCCATCATACACATATCATCACCATATGTGAC
ATTGCAAATATGACATCCGAGACTGCGGTAATAGAACCAGCGCCTGAGAA
TACCAGTGACCATCTTCCAGTTTCCACTTCCTTATTTCTCGAGAACACAT
CAGATCATCATCAACAGCAAACAACACCTCCGAGATGGTCTCAATTACCC
AACTATCTTTGGTCCAATGAAAGATTTCTGGAGCTCTACAAAAAAAGGTT
GCTGAGGCAATGCCACTCAAATCAAGCggaaatattaacaaaaatttAGA
CACTCTCTCTGATCTACTTAAGACTGTGCTAGTAAAAGCTATACAGAGAT
AGAAAGCAATTTCCGGAAAGTCGAACCAAAACAGTGGTGGAATCAGGATC
TAACAAGGTGCAGAAATACACTCAAACAAAACTTCAATATATGGAGAGAC
AATGGTTTCGAAAAGGATATGAAGAATTCAGTGTATTATGCCCGATATGC
GTTTGCCAGGAAAATATTTCGTTATCTCATGCGCCACTACAAAAACCAAG
CGACGGCCAAATACTACGTAAACATTGATcggttaaagaaaataaacccT
AGACACTACTGGAAAAAGATTATACTTAACAAAACATCAGCAGAAAAACT
ATACACAATTAACAACAAAACGTCAACAGAGGAGATCACAGAAGAATTTG
GCCATCATTTCCAATCCGTTTTGAACGAACCTAGAGTCCAACATATTGAC
AATGAATACGCAAACGCTCAATTACTGTGAATCCTACAGGAACTACCATA
CAACTCAGAATTCCACATAACCGAGATCGAAGTAGAGAACGCCATAAGTA
GACTCAACAAAAACAAGACTATGGACCCATACCATCTGAAAGCAGAACAC
TTCGTACATGCCTCGAGTAACATTTTCATAACAGAAATAACTAAAATCAT
CAATACTGTCTTCAAAACTAGAACACCAGAAGCTCTAAGTGTATCAATAA
TAATTCCAATCTTACCGTAAATCTCTTAAGTACTGATTCTAAT
Run BLAST on NCBI

transcript from alignment at scaffold_86:171480..176137+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072833 ID=TCONS_00072833|Name=TCONS_00072833|organism=Clytia hemisphaerica|type=transcript|length=4658bp|location=Sequence derived from alignment at scaffold_86:171480..176137+ (Clytia hemisphaerica)
gaaaaatttataaaaaatgggTTCAGTGCATTCGCTACAGCGTAATGAGC CATTGAAAAAAGATCAGGTGAAATATGTTAAAACGATTGCTTATTATGTT CAAGATTTGAAACACTTACCTCGAGGAATGACCAAAGTCTTGGATCACCT TTATCTTGGTAATTGGCAAGATGCAACCGATGTTGAAAAGCTACGAGAAG TAGGtgagaaatcattttctttttcaaaaacctatGCTTTATCTTCTCAA GGAATTATCATAGGTGGTTTTAGACGCTGTCGAACTTGTCAGGGGAAGAG ATTTGTTAATTAGTTAGATTAATTGCATTTTCATTGTCAatacgagcgtt gcactccttcgcatgtttccgacgtacttgctctactttcttaaatccgc cagtggCCATGGGTCTGCCTTGGAACTTTACCAAGGCAGGGCTAGTGAAA ATGAAATCTAAAGCCTCAGTAAAATAAAAGctcatttctttcttttatca aTTTAGCCACTTAACCAAGTGCTACTGGCATCATTTGCTTGATCTTTTCG GTCCTATATCGCtagacacccctttctcacagacccggtaggatattttc agccagtggggataaaataacggactaaaagtcgacggggattgatattc ccatattttcatggctggggatttcatttcttttgttttcaagtcagcaA ATTCATGGcaatttatttgattattttcaatgggacAGAAATTAGAGGAt cattttccaccggggacgatattttggccattttttccattCGGAAGGGT TCCCAGTAGATCTGTGGGAAGGGGGTGTCACAGGTCATAATTTAAGAGCA CTTCGACTCATGGCGCTCTGTTTTTTACCCTACAATTAAAAGGCAGTTAA GATTGCTTTTTTTCTTAGTTGTGGTTGAAATCTGGCATATTTCTTCCTCG GGTATtttatctgggggtgttttttttttctccaaatagtaggggccaag cctggggttctGTGACATCTTTTTTTACGACCTAGCCGGATTAGGCCTGG AAAAACTTTTCATGATCAAAATAGTgccgccataggcaaaactgcaaggg aaaataaggggtagagaaatagcttattttcgcgtgaaattctgagcaaa aactttattacaacaactctctgactaaaacacacagtCGGGGTACCTAA GGGCACTCCCGAATGGTCTCATGAAGCttgtaaatgttttttaggttttt tcgaagcatttcgATATGGAAAATAAGATGGGGTATGGTCAGATGGTCCC ACTtgttgaaaaatcgaaaaatttcgaaaaaaactctttttaccaaattt tcatgattttgatgacgtcacagaaaTAAGAATTTAAATAACTTCTATTA GGAGAAAGATTTTCACCATAAAGGTGTAAATCAATAAAAGGAAGCGAtcc acgaaaaaaaaattaaaattctttgctgacgtcagcaaattttgtgaaaa aaccgTTTCGGCtaaaatatgctgacgtcagcaaatgattttaaatttcC TAGGGCGAATATCTAGAGGTCTTCttttcgtttttcaaaaatttagattt ttgaggCCTGTGCATAGGAGTTTTTCGCCAAACCTAGGCTGAATAAGGAA TAAATATTTATGGTTTCAATAATGAGTTTTTAAGTTAGATTTTCTTGCTA CAatcttaaaataatttgaagctattgaagttgagcccagtgcgttaaGC GCATTCGACTATTTTTAATCGAATTCGAGTTACATAAACcttttcattaa aataataaattacgtcacgaaaatCACTTGCCTtctattcaaacaattac catcgTGGTGAGTATGTCCTTTGAGACAGTAAATGACTTTGTTATGAATA GGAATCAGTTTTAATAAAATGCGCTGGGAGTCAATCACCATAGGAATAAT TTCAAAAGGAGGCAAGTGAttttcgtaacgtaatttatgaaaaagtctat tgCTAGCgtgcacctcactaaaaaccgggatttttcatctcgtctcttag tgagttccactttgacgagtttcgaaaaatagaagcctttcaagtgcttt gacgcaaatttgattattttgctactgcaggagcttcgaaagttaaaagt gacgtcaaaaaatcgaatgtttagagcccgaaaacctgggctcaaaacat tcaaaaaagtcgcaaagtggaatagacgtgtAAAAAAACGCgagtgacgt ctagtataggctagtcTATTGCGTGCttgttaaaaaagttaaaagttctG CGTGAGTTGGATATTAGCCACTGATATATCAATGATCTGGATTTTTCACC ATCTTATTTTCCAGGAATCACACACATTATCAACACAGTCGATGAAGGGG AAAAAAATACCAGTACGAAGAAAGATTTTTACGGACCAGATATCGAATAT ATGGGATTTAACTCGCAAGATGATGAAAATTACGAAATTATGAAACATTT TGAGGATGTTCACAAATTCATAGAAAACGCGAAGGCGTCAGGTGGAAAAT GTTTACNAAACATTTTGAGGATGTTCACAAATTCATAGAAAACGCGAAGG CGTCAGGCGGAAAGTGTTTAATTCACTGCATGGCGGGTATCAATAGAAGT GGTTGCCTAGCAACTGCGCATGTTATGTTAGATCAAAATATTGGACCAAT AACAGCCGCACGATTCGTTTATGAGAAAAGAGGTGTGCTGCTTTCAAATA ATGGGTTTATAGAACGTTTAGTTAAATTTGCTGTCGATCGTGATTTGCTT TATTTAGATAAAGACAATATACTTCCTCTGTATGGGAACCACTGAATATT ACAACATCGTTTAAACGTAAAAGAATGGTAGTAGAATCGAGGTTATATCC AGCAATTGTATGGAAATATTTAGTTTCCTAAACCACAAAATTCGTTGCAT AGAGAAACTGTAATTGCATTAcatttggacctaccccggtggagctgcta taaatttacaaattttcagaTGCCTAAGGccaaaaaggaaatttgaattt tacgaGCTAGAAAATCAGACGAATTTATTTATACCGTTGCGGACGCAGTC TAGTGAAAGGGAAACGTAAGACGGAGTCAGACTGAGTCCTGATAAAACGA ATGTATAttcatgctttttttataagaatagtgtactttggatgagggtc aagtattcttaagaaagtgccaaaattgagggtgaaatattcttaacata tatacttgacttttttacaaacatgagaaatgatcaatttgagagttttg gacttttgagtgaacatttgggttaaaattacattccttcctcaaaactt tatctctaacaaaggaagtagttttttctgttaaccaaatacaaattgac tgtattcttatcaaactCTGTGAAATGCAAtgcaaaatattcttataaag cgTGTTTACAGACATTTTGAGTTATAAATTGGTTTTAAGAATCGTACGTT TCCTTTAATGATCAGTTTCCTTTGTGTGATTTTCCTCGACTTCCTCTTCG TGGAAACTTGTTGCCTGAACATTTCTTACAAACTTCATAAACGAAATGGA TCTGATTGCAATTGATATCATGAACGGAACAGGCCCATCATACACATATC ATCACCATATGTGACATTGCAAATATGACATCCGAGACTGCGGTAATAGA ACCAGCGCCTGAGAATACCAGTGACCATCTTCCAGTTTCCACTTCCTTAT TTCTCGAGAACACATCAGATCATCATCAACAGCAAACAACACCTCCGAGA TGGTCTCAATTACCCAACTATCTTTGGTCCAATGAAAGATTTCTGGAGCT CTACAAAAAAAGGTTGCTGAGGCAATGCCACTCAAATCAAGCggaaatat taacaaaaatttAGACACTCTCTCTGATCTACTTAAGACTGTGCTAGTAA AAGCTATACAGAGATAGAAAGCAATTTCCGGAAAGTCGAACCAAAACAGT GGTGGAATCAGGATCTAACAAGGTGCAGAAATACACTCAAACAAAACTTC AATATATGGAGAGACAATGGTTTCGAAAAGGATATGAAGAATTCAGTGTA TTATGCCCGATATGCGTTTGCCAGGAAAATATTTCGTTATCTCATGCGCC ACTACAAAAACCAAGCGACGGCCAAATACTACGTAAACATTGATcggtta aagaaaataaacccTAGACACTACTGGAAAAAGATTATACTTAACAAAAC ATCAGCAGAAAAACTATACACAATTAACAACAAAACGTCAACAGAGGAGA TCACAGAAGAATTTGGCCATCATTTCCAATCCGTTTTGAACGAACCTAGA GTCCAACATATTGACAATGAATACGCAAACGCTCAATTACTGTGAATCCT ACAGGAACTACCATACAACTCAGAATTCCACATAACCGAGATCGAAGTAG AGAACGCCATAAGTAGACTCAACAAAAACAAGACTATGGACCCATACCAT CTGAAAGCAGAACACTTCGTACATGCCTCGAGTAACATTTTCATAACAGA AATAACTAAAATCATCAATACTGTCTTCAAAACTAGAACACCAGAAGCTC TAAGTGTATCAATAATAATTCCAATCTTACCGTAAATCTCTTAAGTACTG ATTCTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045210XLOC_045210Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072833-exon-scaffold_86-1491911889:171480..171678TCONS_00072833-exon-scaffold_86-1491911889:171480..171678Clytia hemisphaericaexon
TCONS_00072833-exon-scaffold_86-1510915933:171480..171678TCONS_00072833-exon-scaffold_86-1510915933:171480..171678Clytia hemisphaericaexon
TCONS_00072833-exon-scaffold_86-1575043694:171480..171678TCONS_00072833-exon-scaffold_86-1575043694:171480..171678Clytia hemisphaericaexon
TCONS_00072833-exon-scaffold_86-1491911889:173844..176137TCONS_00072833-exon-scaffold_86-1491911889:173844..176137Clytia hemisphaericaexon
TCONS_00072833-exon-scaffold_86-1510915933:173844..176137TCONS_00072833-exon-scaffold_86-1510915933:173844..176137Clytia hemisphaericaexon
TCONS_00072833-exon-scaffold_86-1575043694:173844..176137TCONS_00072833-exon-scaffold_86-1575043694:173844..176137Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:171480..176137 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.35273 5.39918 4.71037 3.63238 0.151402 0.558269 0.892872 1.2726 1.15605 1.65438 1.10854 1.54264 1.61079 1.06167 2.45138 2.39862 2.54676 2.49764 1.33076 1.55287 3.13801 2.96156 4.70244 3.49623 1.99511 2.77668 2.35976 1.55467 2.34877 2.36687
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072833 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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