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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072791 ID=TCONS_00072791|Name=TCONS_00072791|organism=Clytia hemisphaerica|type=transcript|length=2929bpRun BLAST on NCBI protein sequence of TCONS_00072791-protein >TCONS_00072791-protein ID=TCONS_00072791-protein|Name=TCONS_00072791-protein|organism=Clytia hemisphaerica|type=polypeptide|length=427bp MPLEIKEIEWSETENNVTLKVPLKGANTKTLDIFSSPKYIKVSAPPYYYERun BLAST on NCBI transcript from alignment at scaffold_84:158753..180246- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072791 ID=TCONS_00072791|Name=TCONS_00072791|organism=Clytia hemisphaerica|type=transcript|length=21494bp|location=Sequence derived from alignment at scaffold_84:158753..180246- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_84:158753..180246- >TCONS_00072791 ID=TCONS_00072791|Name=TCONS_00072791|organism=Clytia hemisphaerica|type=CDS|length=12840bp|location=Sequence derived from alignment at scaffold_84:158753..180246- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00072791 vs. Swiss-Prot (Human)
Match: DAAF4 (Dynein assembly factor 4, axonemal OS=Homo sapiens GN=DNAAF4 PE=1 SV=2) HSP 1 Score: 269.24 bits (687), Expect = 4.580e-80 Identity = 173/433 (39.95%), Postives = 255/433 (58.89%), Query Frame = 3
Query: 225 MPLEIKEIEWSETENNVTLKVPLKGANTKTLDIFSSPKYIKVSAPPYYYEVALHDEIDDDISKATINNGQVLFHLQKVTAGLWGQLHASLHKDKEYMKELRAQSLXXXXXXXXXXXXXXXXXXXXQKKYAVREQMRVDNXXXXXXXXXXXXXXXXISRDMEQWKNNETGSETKPS---EEKKAPNET----ERTHVDDEKLIXXXXXXXXQPTPKSSPRINTQMPLPGTTVNASSKDGKDIKSLPAPRQSGSIQVDFTPRKLATPARESKLPEEELWLKKVSEMNKMRKVENAEDVVDM--EEMNPVWLKDKGNGFFQQGNFVAAINAYTSALVLDSSIPMLYANRAACHLSLKQHRECIQDCTNALELYDPPVQDNAMSRCRALTRRGTAYYQLHQYVDALRDYDAAIKLDPKNQALRTDAFKIRRTLQGGE 1496
MPL++ + W +T+ V L +PLKG + D+F + Y+KV+ PP+ +E L+ IDD+ SKA I N ++F L K A +W L + DKE M+ +R +S+ Q Q + +E + +AA + + +KYA+ M+++ EERK E+ K E + ++ +E WK + +E + EEK E ER + + L +N P ++S I T+ K +D S+PAPR GSI+++FTPR T RES++ EEE WL K +E + + AE + D+ EE NP WLKDKGN F N++AAINAY A+ L++ +P+LY NRAACHL LK + I+D + ALEL PPV DNA +R +A RRGTA+ QL YV+ L+DY+AA+K+DP N+ ++ DA KIR +QG E
Sbjct: 1 MPLQVSDYSWQQTKTAVFLSLPLKGVCVRDTDVFCTENYLKVNFPPFLFEAFLYAPIDDESSKAKIGNDTIVFTLYKKEAAMWETLSVT-GVDKEMMQRIREKSILQAQERAKEATEAKAAAKREDQKYALSVMMKIEEEERKKIEDMKENERIKATKALEAWKEYQRKAEEQKKIQREEKLCQKEKQIKEERKKIKYKSLTRNLASRNLAPKGRNSENIFTE------------KLKED--SIPAPRSVGSIKINFTPRVFPTALRESQVAEEEEWLHKQAEARRAMNTDIAE-LCDLKEEEKNPEWLKDKGNKLFATENYLAAINAYNLAIRLNNKMPLLYLNRAACHLKLKNLHKAIEDSSKALELLMPPVTDNANARMKAHVRRGTAFCQLELYVEGLQDYEAALKIDPSNKIVQIDAEKIRNVIQGTE 417 The following BLAST results are available for this feature:
BLAST of TCONS_00072791 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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