TCONS_00072754 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072754
Unique NameTCONS_00072754
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1591

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072754 ID=TCONS_00072754|Name=TCONS_00072754|organism=Clytia hemisphaerica|type=transcript|length=1591bp
tttgttttaaatttattGCATTTATAAAAATGGAAGTCCATAGATTTTGG
TATAAAAGGGTTTTGATAGAAACGATCAAAATATCATACTAAGTTATTAC
AACATCAATGGATGGACGAATTCCCAacttttttataaacttttttaaCT
CTTACAATATTGTTCGGTAAAGTCTATCTTGATCAAAGTTGGAATATTGA
ATCTTGTGCGATTTGCttttaaatgtttgaaattCTTTGGTTTTTCAGtt
gttttatattttagaaATCATTTCTCTTCCTAAAGATATTTCCAATCTTG
CGACATAAAAGAGTTTTTAGTTCTGGCTCTAAGAAAATGTAAATCCATGC
GTCTAAGAAGTTAGATACCGAATATGAAATAGCTAGAGTATTCAGTAACC
AAGTAGAATTGTTTCCAGCCATTACTACCACAAAAAGCATAATCATGTCA
GCACCAACAATGAAAATTAAGAAAGTTAGTATAAGTAGAACAGGTATAAA
GAATCTCGATTTCCGAAAGGTAGTGATTGAGCTGCGACGTTGTCGCGCCT
GTCTCCGGGGTGGCGGCTTCGGGGAGCCACTATTGCTGTCACCCATTTCG
TATTCACCTTCCTTTTGCCGTTCGCGCGGTATACGTAACGTTGGCACATG
AATCGGGATGACTCGCGTAGTGTTGAATTTCTTAAATATGAAAAGATAAC
TTGCAAAGGCTAGAATGATGAAGAAAAATTCAACCGTTGGATAGAAATAT
GTGAAGAAGTAATTCTCCCATTGGAAATCAGCTAACCCTTTACATAAACC
AACTGTTATGGTTAATAAGCCACTGATTACCCATAATCCTATGAGTAGTT
TAGTTGCCTTGTGTTCGTTCCAATATACTGGATATTTGATGTTTAGGAGA
ATCTCTAATAGTCTGTCTATGGTGATGAATATCATTGAGAAATGGAAGAC
AATGGCAGTGCCGGTGAATTGCACCAGCATGATGTAGTATGAAATTTGTT
GCATGGTGTTCGAGAGATTCTCGTTCACGTTGATAGAGATTTTGATCACT
TCCAGGAAATTCATAGTCAGTTCTGATGCACTCAGACTTATCAAGTAGAT
GTGGTGAATACGTAGATGTGAGACCTTCTTTTGCCACCATAATAGATGGA
TTCCGATAGCGTGTAATGTTGTGTTTACTATAGCAAGTCCAATCAATACC
ACGTTTAGCCATTCAACCATAATTTAAAATTCAAACAACAATTAATAATT
TGaagaatgagatttttttcgAGCGTGTATATTAATGAttctgttttctt
cttcattaaaaaaaattttcaatccttaaaccttatttcaaatttcttgt
aatttttttcatcaaaatgttgtttttaaatGACTTAATAAATCAatgtg
aaatttttgtttttgatgattcCGTTATGAGTTCGATGTATCGTTATGAG
ATTCGTCTTGAAGCCGTAAAAGTATTTTATTATCACTCTTTCTTTAGGCc
gtgttttgttgtttttaacaCCTTCTTCTTTTTTGGcttgatatttttat
taattttttaagaaaatagatTTCAAAAGACAAAGCATTCG
Run BLAST on NCBI

protein sequence of 7 transmembrane protein

>TCONS_00072754-protein ID=TCONS_00072754-protein|Name=7 transmembrane protein|organism=Clytia hemisphaerica|type=polypeptide|length=319bp
MVEWLNVVLIGLAIVNTTLHAIGIHLLWWQKKVSHLRIHHIYLISLSASE
LTMNFLEVIKISINVNENLSNTMQQISYYIMLVQFTGTAIVFHFSMIFIT
IDRLLEILLNIKYPVYWNEHKATKLLIGLWVISGLLTITVGLCKGLADFQ
WENYFFTYFYPTVEFFFIILAFASYLFIFKKFNTTRVIPIHVPTLRIPRE
RQKEGEYEMGDSNSGSPKPPPRRQARQRRSSITTFRKSRFFIPVLLILTF
LIFIVGADMIMLFVVVMAGNNSTWLLNTLAISYSVSNFLDAWIYIFLEPE
LKTLLCRKIGNIFRKRNDF
Run BLAST on NCBI

transcript from alignment at scaffold_82:521428..523018

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072754 ID=TCONS_00072754|Name=TCONS_00072754|organism=Clytia hemisphaerica|type=transcript|length=1591bp|location=Sequence derived from alignment at scaffold_82:521428..523018 (Clytia hemisphaerica)
CGAATGCTTTGTCTTTTGAAatctattttcttaaaaaattaataaaaata tcaagCCAAAAAAGAAGAAGGtgttaaaaacaacaaaacacgGCCTAAAG AAAGAGTGATAATAAAATACTTTTACGGCTTCAAGACGAATCTCATAACG ATACATCGAACTCATAACGgaatcatcaaaaacaaaaatttcacatTGAT TTATTAAGTCatttaaaaacaacattttgatgaaaaaaattacaagaaat ttgaaataaggtttaaggattgaaaattttttttaatgaagaagaaaaca gaaTCATTAATATACACGCTcgaaaaaaatctcattcttCAAATTATTAA TTGTTGTTTGAATTTTAAATTATGGTTGAATGGCTAAACGTGGTATTGAT TGGACTTGCTATAGTAAACACAACATTACACGCTATCGGAATCCATCTAT TATGGTGGCAAAAGAAGGTCTCACATCTACGTATTCACCACATCTACTTG ATAAGTCTGAGTGCATCAGAACTGACTATGAATTTCCTGGAAGTGATCAA AATCTCTATCAACGTGAACGAGAATCTCTCGAACACCATGCAACAAATTT CATACTACATCATGCTGGTGCAATTCACCGGCACTGCCATTGTCTTCCAT TTCTCAATGATATTCATCACCATAGACAGACTATTAGAGATTCTCCTAAA CATCAAATATCCAGTATATTGGAACGAACACAAGGCAACTAAACTACTCA TAGGATTATGGGTAATCAGTGGCTTATTAACCATAACAGTTGGTTTATGT AAAGGGTTAGCTGATTTCCAATGGGAGAATTACTTCTTCACATATTTCTA TCCAACGGTTGAATTTTTCTTCATCATTCTAGCCTTTGCAAGTTATCTTT TCATATTTAAGAAATTCAACACTACGCGAGTCATCCCGATTCATGTGCCA ACGTTACGTATACCGCGCGAACGGCAAAAGGAAGGTGAATACGAAATGGG TGACAGCAATAGTGGCTCCCCGAAGCCGCCACCCCGGAGACAGGCGCGAC AACGTCGCAGCTCAATCACTACCTTTCGGAAATCGAGATTCTTTATACCT GTTCTACTTATACTAACTTTCTTAATTTTCATTGTTGGTGCTGACATGAT TATGCTTTTTGTGGTAGTAATGGCTGGAAACAATTCTACTTGGTTACTGA ATACTCTAGCTATTTCATATTCGGTATCTAACTTCTTAGACGCATGGATT TACATTTTCTTAGAGCCAGAACTAAAAACTCTTTTATGTCGCAAGATTGG AAATATCTTTAGGAAGAGAAATGATttctaaaatataaaacaaCTGAAAA ACCAAAGaatttcaaacatttaaaaGCAAATCGCACAAGATTCAATATTC CAACTTTGATCAAGATAGACTTTACCGAACAATATTGTAAGAGttaaaaa agtttataaaaaagtTGGGAATTCGTCCATCCATTGATGTTGTAATAACT TAGTATGATATTTTGATCGTTTCTATCAAAACCCTTTTATACCAAAATCT ATGGACTTCCATTTTTATAAATGCaataaatttaaaacaaa

Coding sequence (CDS) from alignment at scaffold_82:521428..523018

>TCONS_00072754 ID=TCONS_00072754|Name=TCONS_00072754|organism=Clytia hemisphaerica|type=CDS|length=960bp|location=Sequence derived from alignment at scaffold_82:521428..523018 (Clytia hemisphaerica)
ATGGTTGAATGGCTAAACGTGGTATTGATTGGACTTGCTATAGTAAACAC
AACATTACACGCTATCGGAATCCATCTATTATGGTGGCAAAAGAAGGTCT
CACATCTACGTATTCACCACATCTACTTGATAAGTCTGAGTGCATCAGAA
CTGACTATGAATTTCCTGGAAGTGATCAAAATCTCTATCAACGTGAACGA
GAATCTCTCGAACACCATGCAACAAATTTCATACTACATCATGCTGGTGC
AATTCACCGGCACTGCCATTGTCTTCCATTTCTCAATGATATTCATCACC
ATAGACAGACTATTAGAGATTCTCCTAAACATCAAATATCCAGTATATTG
GAACGAACACAAGGCAACTAAACTACTCATAGGATTATGGGTAATCAGTG
GCTTATTAACCATAACAGTTGGTTTATGTAAAGGGTTAGCTGATTTCCAA
TGGGAGAATTACTTCTTCACATATTTCTATCCAACGGTTGAATTTTTCTT
CATCATTCTAGCCTTTGCAAGTTATCTTTTCATATTTAAGAAATTCAACA
CTACGCGAGTCATCCCGATTCATGTGCCAACGTTACGTATACCGCGCGAA
CGGCAAAAGGAAGGTGAATACGAAATGGGTGACAGCAATAGTGGCTCCCC
GAAGCCGCCACCCCGGAGACAGGCGCGACAACGTCGCAGCTCAATCACTA
CCTTTCGGAAATCGAGATTCTTTATACCTGTTCTACTTATACTAACTTTC
TTAATTTTCATTGTTGGTGCTGACATGATTATGCTTTTTGTGGTAGTAAT
GGCTGGAAACAATTCTACTTGGTTACTGAATACTCTAGCTATTTCATATT
CGGTATCTAACTTCTTAGACGCATGGATTTACATTTTCTTAGAGCCAGAA
CTAAAAACTCTTTTATGTCGCAAGATTGGAAATATCTTTAGGAAGAGAAA
TGATttctaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045164XLOC_045164Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
7 transmembrane proteinTCONS_00072754-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072754-exon-scaffold_82-1491911889:521428..523018TCONS_00072754-exon-scaffold_82-1491911889:521428..523018Clytia hemisphaericaexon
TCONS_00072754-exon-scaffold_82-1510915933:521428..523018TCONS_00072754-exon-scaffold_82-1510915933:521428..523018Clytia hemisphaericaexon
TCONS_00072754-exon-scaffold_82-1575043694:521428..523018TCONS_00072754-exon-scaffold_82-1575043694:521428..523018Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_82supercontigscaffold_82:521428..523018 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.0250336 0.0290664 0.0853107 1.59248 0.957479 0 0.0926953 0.0648981 0 0.156051 0.0341939 0.682927 0.372344 0 0 0.115628 0.217278 2.21042 2.22738 0.52123 0.435836 0.176605 0.32112 0.303184 0.491971 0 0 0 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072754 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top