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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072754 ID=TCONS_00072754|Name=TCONS_00072754|organism=Clytia hemisphaerica|type=transcript|length=1591bp
tttgttttaaatttattGCATTTATAAAAATGGAAGTCCATAGATTTTGG
TATAAAAGGGTTTTGATAGAAACGATCAAAATATCATACTAAGTTATTAC
AACATCAATGGATGGACGAATTCCCAacttttttataaacttttttaaCT
CTTACAATATTGTTCGGTAAAGTCTATCTTGATCAAAGTTGGAATATTGA
ATCTTGTGCGATTTGCttttaaatgtttgaaattCTTTGGTTTTTCAGtt
gttttatattttagaaATCATTTCTCTTCCTAAAGATATTTCCAATCTTG
CGACATAAAAGAGTTTTTAGTTCTGGCTCTAAGAAAATGTAAATCCATGC
GTCTAAGAAGTTAGATACCGAATATGAAATAGCTAGAGTATTCAGTAACC
AAGTAGAATTGTTTCCAGCCATTACTACCACAAAAAGCATAATCATGTCA
GCACCAACAATGAAAATTAAGAAAGTTAGTATAAGTAGAACAGGTATAAA
GAATCTCGATTTCCGAAAGGTAGTGATTGAGCTGCGACGTTGTCGCGCCT
GTCTCCGGGGTGGCGGCTTCGGGGAGCCACTATTGCTGTCACCCATTTCG
TATTCACCTTCCTTTTGCCGTTCGCGCGGTATACGTAACGTTGGCACATG
AATCGGGATGACTCGCGTAGTGTTGAATTTCTTAAATATGAAAAGATAAC
TTGCAAAGGCTAGAATGATGAAGAAAAATTCAACCGTTGGATAGAAATAT
GTGAAGAAGTAATTCTCCCATTGGAAATCAGCTAACCCTTTACATAAACC
AACTGTTATGGTTAATAAGCCACTGATTACCCATAATCCTATGAGTAGTT
TAGTTGCCTTGTGTTCGTTCCAATATACTGGATATTTGATGTTTAGGAGA
ATCTCTAATAGTCTGTCTATGGTGATGAATATCATTGAGAAATGGAAGAC
AATGGCAGTGCCGGTGAATTGCACCAGCATGATGTAGTATGAAATTTGTT
GCATGGTGTTCGAGAGATTCTCGTTCACGTTGATAGAGATTTTGATCACT
TCCAGGAAATTCATAGTCAGTTCTGATGCACTCAGACTTATCAAGTAGAT
GTGGTGAATACGTAGATGTGAGACCTTCTTTTGCCACCATAATAGATGGA
TTCCGATAGCGTGTAATGTTGTGTTTACTATAGCAAGTCCAATCAATACC
ACGTTTAGCCATTCAACCATAATTTAAAATTCAAACAACAATTAATAATT
TGaagaatgagatttttttcgAGCGTGTATATTAATGAttctgttttctt
cttcattaaaaaaaattttcaatccttaaaccttatttcaaatttcttgt
aatttttttcatcaaaatgttgtttttaaatGACTTAATAAATCAatgtg
aaatttttgtttttgatgattcCGTTATGAGTTCGATGTATCGTTATGAG
ATTCGTCTTGAAGCCGTAAAAGTATTTTATTATCACTCTTTCTTTAGGCc
gtgttttgttgtttttaacaCCTTCTTCTTTTTTGGcttgatatttttat
taattttttaagaaaatagatTTCAAAAGACAAAGCATTCG Run BLAST on NCBI protein sequence of 7 transmembrane protein >TCONS_00072754-protein ID=TCONS_00072754-protein|Name=7 transmembrane protein|organism=Clytia hemisphaerica|type=polypeptide|length=319bp
MVEWLNVVLIGLAIVNTTLHAIGIHLLWWQKKVSHLRIHHIYLISLSASE
LTMNFLEVIKISINVNENLSNTMQQISYYIMLVQFTGTAIVFHFSMIFIT
IDRLLEILLNIKYPVYWNEHKATKLLIGLWVISGLLTITVGLCKGLADFQ
WENYFFTYFYPTVEFFFIILAFASYLFIFKKFNTTRVIPIHVPTLRIPRE
RQKEGEYEMGDSNSGSPKPPPRRQARQRRSSITTFRKSRFFIPVLLILTF
LIFIVGADMIMLFVVVMAGNNSTWLLNTLAISYSVSNFLDAWIYIFLEPE
LKTLLCRKIGNIFRKRNDF Run BLAST on NCBI transcript from alignment at scaffold_82:521428..523018 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072754 ID=TCONS_00072754|Name=TCONS_00072754|organism=Clytia hemisphaerica|type=transcript|length=1591bp|location=Sequence derived from alignment at scaffold_82:521428..523018 (Clytia hemisphaerica)
CGAATGCTTTGTCTTTTGAAatctattttcttaaaaaattaataaaaata
tcaagCCAAAAAAGAAGAAGGtgttaaaaacaacaaaacacgGCCTAAAG
AAAGAGTGATAATAAAATACTTTTACGGCTTCAAGACGAATCTCATAACG
ATACATCGAACTCATAACGgaatcatcaaaaacaaaaatttcacatTGAT
TTATTAAGTCatttaaaaacaacattttgatgaaaaaaattacaagaaat
ttgaaataaggtttaaggattgaaaattttttttaatgaagaagaaaaca
gaaTCATTAATATACACGCTcgaaaaaaatctcattcttCAAATTATTAA
TTGTTGTTTGAATTTTAAATTATGGTTGAATGGCTAAACGTGGTATTGAT
TGGACTTGCTATAGTAAACACAACATTACACGCTATCGGAATCCATCTAT
TATGGTGGCAAAAGAAGGTCTCACATCTACGTATTCACCACATCTACTTG
ATAAGTCTGAGTGCATCAGAACTGACTATGAATTTCCTGGAAGTGATCAA
AATCTCTATCAACGTGAACGAGAATCTCTCGAACACCATGCAACAAATTT
CATACTACATCATGCTGGTGCAATTCACCGGCACTGCCATTGTCTTCCAT
TTCTCAATGATATTCATCACCATAGACAGACTATTAGAGATTCTCCTAAA
CATCAAATATCCAGTATATTGGAACGAACACAAGGCAACTAAACTACTCA
TAGGATTATGGGTAATCAGTGGCTTATTAACCATAACAGTTGGTTTATGT
AAAGGGTTAGCTGATTTCCAATGGGAGAATTACTTCTTCACATATTTCTA
TCCAACGGTTGAATTTTTCTTCATCATTCTAGCCTTTGCAAGTTATCTTT
TCATATTTAAGAAATTCAACACTACGCGAGTCATCCCGATTCATGTGCCA
ACGTTACGTATACCGCGCGAACGGCAAAAGGAAGGTGAATACGAAATGGG
TGACAGCAATAGTGGCTCCCCGAAGCCGCCACCCCGGAGACAGGCGCGAC
AACGTCGCAGCTCAATCACTACCTTTCGGAAATCGAGATTCTTTATACCT
GTTCTACTTATACTAACTTTCTTAATTTTCATTGTTGGTGCTGACATGAT
TATGCTTTTTGTGGTAGTAATGGCTGGAAACAATTCTACTTGGTTACTGA
ATACTCTAGCTATTTCATATTCGGTATCTAACTTCTTAGACGCATGGATT
TACATTTTCTTAGAGCCAGAACTAAAAACTCTTTTATGTCGCAAGATTGG
AAATATCTTTAGGAAGAGAAATGATttctaaaatataaaacaaCTGAAAA
ACCAAAGaatttcaaacatttaaaaGCAAATCGCACAAGATTCAATATTC
CAACTTTGATCAAGATAGACTTTACCGAACAATATTGTAAGAGttaaaaa
agtttataaaaaagtTGGGAATTCGTCCATCCATTGATGTTGTAATAACT
TAGTATGATATTTTGATCGTTTCTATCAAAACCCTTTTATACCAAAATCT
ATGGACTTCCATTTTTATAAATGCaataaatttaaaacaaa Coding sequence (CDS) from alignment at scaffold_82:521428..523018 >TCONS_00072754 ID=TCONS_00072754|Name=TCONS_00072754|organism=Clytia hemisphaerica|type=CDS|length=960bp|location=Sequence derived from alignment at scaffold_82:521428..523018 (Clytia hemisphaerica)
ATGGTTGAATGGCTAAACGTGGTATTGATTGGACTTGCTATAGTAAACAC
AACATTACACGCTATCGGAATCCATCTATTATGGTGGCAAAAGAAGGTCT
CACATCTACGTATTCACCACATCTACTTGATAAGTCTGAGTGCATCAGAA
CTGACTATGAATTTCCTGGAAGTGATCAAAATCTCTATCAACGTGAACGA
GAATCTCTCGAACACCATGCAACAAATTTCATACTACATCATGCTGGTGC
AATTCACCGGCACTGCCATTGTCTTCCATTTCTCAATGATATTCATCACC
ATAGACAGACTATTAGAGATTCTCCTAAACATCAAATATCCAGTATATTG
GAACGAACACAAGGCAACTAAACTACTCATAGGATTATGGGTAATCAGTG
GCTTATTAACCATAACAGTTGGTTTATGTAAAGGGTTAGCTGATTTCCAA
TGGGAGAATTACTTCTTCACATATTTCTATCCAACGGTTGAATTTTTCTT
CATCATTCTAGCCTTTGCAAGTTATCTTTTCATATTTAAGAAATTCAACA
CTACGCGAGTCATCCCGATTCATGTGCCAACGTTACGTATACCGCGCGAA
CGGCAAAAGGAAGGTGAATACGAAATGGGTGACAGCAATAGTGGCTCCCC
GAAGCCGCCACCCCGGAGACAGGCGCGACAACGTCGCAGCTCAATCACTA
CCTTTCGGAAATCGAGATTCTTTATACCTGTTCTACTTATACTAACTTTC
TTAATTTTCATTGTTGGTGCTGACATGATTATGCTTTTTGTGGTAGTAAT
GGCTGGAAACAATTCTACTTGGTTACTGAATACTCTAGCTATTTCATATT
CGGTATCTAACTTCTTAGACGCATGGATTTACATTTTCTTAGAGCCAGAA
CTAAAAACTCTTTTATGTCGCAAGATTGGAAATATCTTTAGGAAGAGAAA
TGATttctaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072754-exon-scaffold_82-1491911889:521428..523018 | TCONS_00072754-exon-scaffold_82-1491911889:521428..523018 | Clytia hemisphaerica | exon |
| TCONS_00072754-exon-scaffold_82-1510915933:521428..523018 | TCONS_00072754-exon-scaffold_82-1510915933:521428..523018 | Clytia hemisphaerica | exon |
| TCONS_00072754-exon-scaffold_82-1575043694:521428..523018 | TCONS_00072754-exon-scaffold_82-1575043694:521428..523018 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_82 | supercontig | scaffold_82:521428..523018 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000276 | GPCR_Rhodpsn |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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