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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072738 ID=TCONS_00072738|Name=TCONS_00072738|organism=Clytia hemisphaerica|type=transcript|length=3236bp
gttttgaaaaaagacgGATTGTCATATACAATATGGATAGATCAAACGTT
GGTTTTCTTGTTACGTCTAGATATTTCCTCGTCTTTAAATCTGCTTAAAT
CTACAAAATATATACTTTGATATAAAAACAAGATATAAAACATGTTTCGt
gtgaaaaaaataattcgaaaaatGTCGAAGCATAATAAAACAGAATCAAG
TGTTATAAAAATGAAACGAAACATGTTAAATGAGGATTTTCATTCATAGA
AATAGAAATCTCCTGGTCAAACGGATATCCTTTCAAAACCTCGGAGAGAG
AAAAAAACACAGGTCTTCATAATTTAcctttctgaaagaaaaatcagATA
GGCTCGAGTTCAAAACATAGAATTTCGAAAACTAGGCAACTCTGATAAGA
AAAGAATAATTGTATTTTCCTTCTAAAAATACGTCATTCCATTttataca
gggggtggacgagcATTTCCAGAGGATAATgtgagaaaaatttccaattt
ccaagtttttcaattttctaagggggtaaaaagttattctaaaatttcca
ggggttaaaagactgattttagttcgtccctCGCTTTAAGGTACGAAAAA
AAGTACTTTGCAAagtttgccattttccaggggttatccacacattttca
acaaaatctttttgacttgaaaaggttcgtccaccccctgtatggttttt
tatgGAACGGTTCAATGTTATGTCAGACATCGTTGAAAGTAAACCACAAA
TCAGTTTAGTATAGGTTCTCTTATCAAAGCTCCTAgcaaatgaaagaaaa
ttagtttggaACCATTCTTTAAGATTCACAAGAAAAAACAGATTAAAGGG
ATTTATAAGTTCGTCTTTTGCATCTGTTATGagtatgaaaatttcaattt
tcgaaaacacAGACATAAGGTCTAGATTGTTTACTATCAAATATTCGAAA
GAAAACCTGATTTTCATTAAGGGTAACATTTCATCACATAGTTCCTAGAA
CCAAAACTAGTTAACTCAAACTtaaatgttcaaaaaagaagTTGTTTTAT
CATATATGTGATAAAACAAGATAATCAAGATTTAAAGACATTTGTTTACC
AACCCtctttatataagaaccagcaGTGCATCTTTGGGTGGGATCCTTAT
ACccctttgatttcttttgttataagggatgcaaaaaagccttaaaatca
cgtGCGCTTAGCAAGTTTTTgttgaggaaattttttgagGTGGGAATTGT
TTTGACGTCATTAAAATTTCAGTGATGGAGGATATTATCGTACGCAAGGT
ATTACgtttttgcttttttgtatAAATTTGGCGAAAAAAGATAATTAAAA
AGGGTCACAGCCATAAAAGTTTGAAGTGTTTTTCCGAGTCTGATTTGCCC
TCATAACAAAACTATTTCAGGGAAGCGCGCCTAATCTTGCAAAGGTCCGA
ctgttttgacaatttttttaatggGCAGAGATATTTTTAAAACTCAGCTC
TCATTGAAAGAGAGATTTGTTTTTCTCAAAACCTTGATTAGCTTTTATTA
AGGTACATGACTAGGTCGGTAGGTTGTaatagagaaaaaaagaaacaact
AATTCtatagaaaaatatgaaaacaatAACGAGAAAAAAGCAACATAAGA
AATCTAATCATCAACCAACAACAACTCAATTAAgatggtttatttttctt
ccagTACCTTTTCACATCATCGTGTCCTTCTTTAGACACGACCATCAAAC
GTTTCTGACTGTTGGCCCAAAGAAGGTGTTGATTCTCATCAGCATATCTA
CGTAACATTTCAAAGTCACTTTGCGCCAGGAATTGATTATACAAAACTCC
TTCTGTGTAACGTAACCTATCTCTCTCCATCTCCCACAACTTTATTTGAT
CAGTTATGGTGGGAGGGATGATGGGTGTTCTACTTAACATTTGAGGACGA
GCTCTTGTCCTCAGAAAATCAATGATCTGTGAAGCTGATATACCGCATGC
TAAGGCCTGTTGCACGCTTTCACGACTCAACGTACCGACAGTGAAGTCTG
GAAAACGTGACTTGATGTCTGTGAACAAACTAAGCAATGACACTTGAAGA
GCAGATTCGGTGTACGCGTAAACACGATAATTTGTCTCTACTACTAAATA
AGATTGTCCTTGTGATATTGTGTTGGTACTGCCAGTCACAGCAGTGCCCA
GGTTAATGGCTAATCGAGTCGGGTAATACCTTTTTGATGTACGCTTCCGT
TGATGCGCTAATCCAACTTCACGAAGCAATTGTAAAAAATTGAACTGTTC
TGCTGTCAAATTTTTAACCGGGTAGTCTTTACCAAGTACAGAGAATCcag
tttgaaataaaaacgaTAAACATTGCACTAAAACGGCTTTGTCTTTAGAA
TTCAAATGCTGGACCATGAAATACCAGACTTGGGAGGAAGTATCGAGTAA
CAAAAACTGAAAGCCAGCGGAAGTAATCGAAGTgttattttcactttcat
ttaacGTTAACAAACCCGACGAAATCAAAACTTTTGCAACATCAGGACTC
ACTCCTACATTATTCATTCCTTGTTGTGAGCCAGTCATGTATTGTAATAT
GCACTCCCATCGCTCTTTGGCATAATTATCTAAATAAGTTACATCTCGAG
CATGTCTCTCTTCCACTGCTTTAAGCGGCTCTTCTTCAATTTTCCCTCCA
CCGCGAACACCTATTCGAAGGTTTTGctggaaaaatttgttcatttcaAA
ATGTACGGAAGGCGACGTAACCCTGTTCCAAATTTGTAATCCACATAATC
GATCGACGGCTACTTTGTGGTCATTACGATGCTCTTTCTTGCACCAAGAT
AAAATGACGTGCTCTGGGAAAGCTTGGTCTGTGAACAATGTtctcatgac
gtaatgttttccaATCTCAGGTAAACCACGGAAGACAGCTAGACAAGTGA
ATGGGTGGTCATAAAGACCATTGAGAACTTCAGATGACAATGTCAATAGG
TAGCCATACAAATCTTTACAGGCTAGTTTCTTTTTCCCAAACGACTCCAT
CATTATTGTATGATAATTGTATTTGCTTGCTAGAAAAATAACAATATCAC
AAAATGAGTATTTCGTCGctggaaattaaaattttgctgttttgagAAGA
TTACAATCTGGCTAGTCTTACCTCatctatttcttttcaaaatgctGTAA
AGTATTGCAataattgttttaaaatttcacccTTTT Run BLAST on NCBI protein sequence of TCONS_00072738-protein >TCONS_00072738-protein ID=TCONS_00072738-protein|Name=TCONS_00072738-protein|organism=Clytia hemisphaerica|type=polypeptide|length=457bp
MMESFGKKKLACKDLYGYLLTLSSEVLNGLYDHPFTCLAVFRGLPEIGKH
YVMRTLFTDQAFPEHVILSWCKKEHRNDHKVAVDRLCGLQIWNRVTSPSV
HFEMNKFFQQNLRIGVRGGGKIEEEPLKAVEERHARDVTYLDNYAKERWE
CILQYMTGSQQGMNNVGVSPDVAKVLISSGLLTLNESENNTSITSAGFQF
LLLDTSSQVWYFMVQHLNSKDKAVLVQCLSFLFQTGFSVLGKDYPVKNLT
AEQFNFLQLLREVGLAHQRKRTSKRYYPTRLAINLGTAVTGSTNTISQGQ
SYLVVETNYRVYAYTESALQVSLLSLFTDIKSRFPDFTVGTLSRESVQQA
LACGISASQIIDFLRTRARPQMLSRTPIIPPTITDQIKLWEMERDRLRYT
EGVLYNQFLAQSDFEMLRRYADENQHLLWANSQKRLMVVSKEGHDDVKRY
WKKNKPS Run BLAST on NCBI transcript from alignment at scaffold_82:9909..13144 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072738 ID=TCONS_00072738|Name=TCONS_00072738|organism=Clytia hemisphaerica|type=transcript|length=3236bp|location=Sequence derived from alignment at scaffold_82:9909..13144 (Clytia hemisphaerica)
AAAAgggtgaaattttaaaacaattatTGCAATACTTTACagcattttga
aaagaaatagatGAGGTAAGACTAGCCAGATTGTAATCTTctcaaaacag
caaaattttaatttccagCGACGAAATACTCATTTTGTGATATTGTTATT
TTTCTAGCAAGCAAATACAATTATCATACAATAATGATGGAGTCGTTTGG
GAAAAAGAAACTAGCCTGTAAAGATTTGTATGGCTACCTATTGACATTGT
CATCTGAAGTTCTCAATGGTCTTTATGACCACCCATTCACTTGTCTAGCT
GTCTTCCGTGGTTTACCTGAGATtggaaaacattacgtcatgagaACATT
GTTCACAGACCAAGCTTTCCCAGAGCACGTCATTTTATCTTGGTGCAAGA
AAGAGCATCGTAATGACCACAAAGTAGCCGTCGATCGATTATGTGGATTA
CAAATTTGGAACAGGGTTACGTCGCCTTCCGTACATTTtgaaatgaacaa
atttttccagCAAAACCTTCGAATAGGTGTTCGCGGTGGAGGGAAAATTG
AAGAAGAGCCGCTTAAAGCAGTGGAAGAGAGACATGCTCGAGATGTAACT
TATTTAGATAATTATGCCAAAGAGCGATGGGAGTGCATATTACAATACAT
GACTGGCTCACAACAAGGAATGAATAATGTAGGAGTGAGTCCTGATGTTG
CAAAAGTTTTGATTTCGTCGGGTTTGTTAACgttaaatgaaagtgaaaat
aacACTTCGATTACTTCCGCTGGCTTTCAGTTTTTGTTACTCGATACTTC
CTCCCAAGTCTGGTATTTCATGGTCCAGCATTTGAATTCTAAAGACAAAG
CCGTTTTAGTGCAATGTTTAtcgtttttatttcaaactgGATTCTCTGTA
CTTGGTAAAGACTACCCGGTTAAAAATTTGACAGCAGAACAGTTCAATTT
TTTACAATTGCTTCGTGAAGTTGGATTAGCGCATCAACGGAAGCGTACAT
CAAAAAGGTATTACCCGACTCGATTAGCCATTAACCTGGGCACTGCTGTG
ACTGGCAGTACCAACACAATATCACAAGGACAATCTTATTTAGTAGTAGA
GACAAATTATCGTGTTTACGCGTACACCGAATCTGCTCTTCAAGTGTCAT
TGCTTAGTTTGTTCACAGACATCAAGTCACGTTTTCCAGACTTCACTGTC
GGTACGTTGAGTCGTGAAAGCGTGCAACAGGCCTTAGCATGCGGTATATC
AGCTTCACAGATCATTGATTTTCTGAGGACAAGAGCTCGTCCTCAAATGT
TAAGTAGAACACCCATCATCCCTCCCACCATAACTGATCAAATAAAGTTG
TGGGAGATGGAGAGAGATAGGTTACGTTACACAGAAGGAGTTTTGTATAA
TCAATTCCTGGCGCAAAGTGACTTTGAAATGTTACGTAGATATGCTGATG
AGAATCAACACCTTCTTTGGGCCAACAGTCAGAAACGTTTGATGGTCGTG
TCTAAAGAAGGACACGATGATGTGAAAAGGTActggaagaaaaataaacc
atcTTAATTGAGTTGTTGTTGGTTGATGATTAGATTTCTTATGTTGCTTT
TTTCTCGTTattgttttcatatttttctataGAATTagttgtttcttttt
ttctctattACAACCTACCGACCTAGTCATGTACCTTAATAAAAGCTAAT
CAAGGTTTTGAGAAAAACAAATCTCTCTTTCAATGAGAGCTGAGTTTTAA
AAATATCTCTGCccattaaaaaaattgtcaaaacagTCGGACCTTTGCAA
GATTAGGCGCGCTTCCCTGAAATAGTTTTGTTATGAGGGCAAATCAGACT
CGGAAAAACACTTCAAACTTTTATGGCTGTGACCCTTTTTAATTATCTTT
TTTCGCCAAATTTatacaaaaaagcaaaaacGTAATACCTTGCGTACGAT
AATATCCTCCATCACTGAAATTTTAATGACGTCAAAACAATTCCCACctc
aaaaaatttcctcaacAAAAACTTGCTAAGCGCacgtgattttaaggctt
ttttgcatcccttataacaaaagaaatcaaagggGTATAAGGATCCCACC
CAAAGATGCACtgctggttcttatataaagaGGGTTGGTAAACAAATGTC
TTTAAATCTTGATTATCTTGTTTTATCACATATATGATAAAACAActtct
tttttgaacatttaAGTTTGAGTTAACTAGTTTTGGTTCTAGGAACTATG
TGATGAAATGTTACCCTTAATGAAAATCAGGTTTTCTTTCGAATATTTGA
TAGTAAACAATCTAGACCTTATGTCTgtgttttcgaaaattgaaattttc
atactCATAACAGATGCAAAAGACGAACTTATAAATCCCTTTAATCTGTT
TTTTCTTGTGAATCTTAAAGAATGGTtccaaactaattttctttcatttg
cTAGGAGCTTTGATAAGAGAACCTATACTAAACTGATTTGTGGTTTACTT
TCAACGATGTCTGACATAACATTGAACCGTTCcataaaaaaccatacagg
gggtggacgaaccttttcaagtcaaaaagattttgttgaaaatgtgtgga
taacccctggaaaatggcaaactTTGCAAAGTACTTTTTTTCGTACCTTA
AAGCGagggacgaactaaaatcagtcttttaacccctggaaattttagaa
taactttttacccccttagaaaattgaaaaacttggaaattggaaatttt
tctcacATTATCCTCTGGAAATgctcgtccaccccctgtataaAATGGAA
TGACGTATTTTTAGAAGGAAAATACAATTATTCTTTTCTTATCAGAGTTG
CCTAGTTTTCGAAATTCTATGTTTTGAACTCGAGCCTATctgatttttct
ttcagaaaggTAAATTATGAAGACCTGTGTTTTTTTCTCTCTCCGAGGTT
TTGAAAGGATATCCGTTTGACCAGGAGATTTCTATTTCTATGAATGAAAA
TCCTCATTTAACATGTTTCGTTTCATTTTTATAACACTTGATTCTGTTTT
ATTATGCTTCGACatttttcgaattatttttttcacaCGAAACATGTTTT
ATATCTTGTTTTTATATCAAAGTATATATTTTGTAGATTTAAGCAGATTT
AAAGACGAGGAAATATCTAGACGTAACAAGAAAACCAACGTTTGATCTAT
CCATATTGTATATGACAATCcgtcttttttcaaaac Coding sequence (CDS) from alignment at scaffold_82:9909..13144 >TCONS_00072738 ID=TCONS_00072738|Name=TCONS_00072738|organism=Clytia hemisphaerica|type=CDS|length=1374bp|location=Sequence derived from alignment at scaffold_82:9909..13144 (Clytia hemisphaerica)
ATGATGGAGTCGTTTGGGAAAAAGAAACTAGCCTGTAAAGATTTGTATGG
CTACCTATTGACATTGTCATCTGAAGTTCTCAATGGTCTTTATGACCACC
CATTCACTTGTCTAGCTGTCTTCCGTGGTTTACCTGAGATtggaaaacat
tacgtcatgagaACATTGTTCACAGACCAAGCTTTCCCAGAGCACGTCAT
TTTATCTTGGTGCAAGAAAGAGCATCGTAATGACCACAAAGTAGCCGTCG
ATCGATTATGTGGATTACAAATTTGGAACAGGGTTACGTCGCCTTCCGTA
CATTTtgaaatgaacaaatttttccagCAAAACCTTCGAATAGGTGTTCG
CGGTGGAGGGAAAATTGAAGAAGAGCCGCTTAAAGCAGTGGAAGAGAGAC
ATGCTCGAGATGTAACTTATTTAGATAATTATGCCAAAGAGCGATGGGAG
TGCATATTACAATACATGACTGGCTCACAACAAGGAATGAATAATGTAGG
AGTGAGTCCTGATGTTGCAAAAGTTTTGATTTCGTCGGGTTTGTTAACgt
taaatgaaagtgaaaataacACTTCGATTACTTCCGCTGGCTTTCAGTTT
TTGTTACTCGATACTTCCTCCCAAGTCTGGTATTTCATGGTCCAGCATTT
GAATTCTAAAGACAAAGCCGTTTTAGTGCAATGTTTAtcgtttttatttc
aaactgGATTCTCTGTACTTGGTAAAGACTACCCGGTTAAAAATTTGACA
GCAGAACAGTTCAATTTTTTACAATTGCTTCGTGAAGTTGGATTAGCGCA
TCAACGGAAGCGTACATCAAAAAGGTATTACCCGACTCGATTAGCCATTA
ACCTGGGCACTGCTGTGACTGGCAGTACCAACACAATATCACAAGGACAA
TCTTATTTAGTAGTAGAGACAAATTATCGTGTTTACGCGTACACCGAATC
TGCTCTTCAAGTGTCATTGCTTAGTTTGTTCACAGACATCAAGTCACGTT
TTCCAGACTTCACTGTCGGTACGTTGAGTCGTGAAAGCGTGCAACAGGCC
TTAGCATGCGGTATATCAGCTTCACAGATCATTGATTTTCTGAGGACAAG
AGCTCGTCCTCAAATGTTAAGTAGAACACCCATCATCCCTCCCACCATAA
CTGATCAAATAAAGTTGTGGGAGATGGAGAGAGATAGGTTACGTTACACA
GAAGGAGTTTTGTATAATCAATTCCTGGCGCAAAGTGACTTTGAAATGTT
ACGTAGATATGCTGATGAGAATCAACACCTTCTTTGGGCCAACAGTCAGA
AACGTTTGATGGTCGTGTCTAAAGAAGGACACGATGATGTGAAAAGGTAc
tggaagaaaaataaaccatcTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00072738-exon-scaffold_82-1491911889:9909..13144 | TCONS_00072738-exon-scaffold_82-1491911889:9909..13144 | Clytia hemisphaerica | exon |
| TCONS_00072738-exon-scaffold_82-1510915933:9909..13144 | TCONS_00072738-exon-scaffold_82-1510915933:9909..13144 | Clytia hemisphaerica | exon |
| TCONS_00072738-exon-scaffold_82-1575043694:9909..13144 | TCONS_00072738-exon-scaffold_82-1575043694:9909..13144 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_82 | supercontig | scaffold_82:9909..13144 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004598 | TFIIH_p52/Tfb2 |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0000439 | core TFIIH complex |
| GO:0005634 | nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006289 | nucleotide-excision repair |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004003 | ATP-dependent DNA helicase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006289 |
nucleotide-excision repair |
| cellular_component |
GO:0000439 |
core TFIIH complex |
| cellular_component |
GO:0005634 |
nucleus |
| molecular_function |
GO:0004003 |
ATP-dependent DNA helicase activity |
Blast
BLAST of TCONS_00072738 vs. Swiss-Prot (Human)
Match: TF2H4 (General transcription factor IIH subunit 4 OS=Homo sapiens GN=GTF2H4 PE=1 SV=1) HSP 1 Score: 454.907 bits (1169), Expect = 3.467e-148 Identity = 240/453 (52.98%), Postives = 314/453 (69.32%), Query Frame = -1
Query: 1683 LACKDLYGYLLTLSSEVLNGLYDHPFTCLAVFRGLPEIGKHYVMRTLFTDQAFPEHVILSWCKKEHRNDHKVAVDRLCGLQIWNRVTSPS--VHFEMNKFFQQNLRIGVRGGGKI-EEEPLKAVEERHARDVTYLDNYAKERWECILQYMTGSQQGMNNVGVSPDVAKVLISSGLLTLNESENNTSITSAGFQFLLLDTSSQVWYFMVQHLNSKDK--AVLVQCLSFLFQTGFSVLGKDYPVKNLTAEQFNFLQLLREVGLAHQRKRTSKRYYPTRLAINLGTAVTGSTNTISQGQSYLVVETNYRVYAYTESALQVSLLSLFTDIKSRFPDFTVGTLSRESVQQALACGISASQIIDFLRTRARPQMLSRXXXXXXXXTDQIKLWEMERDRLRYTEGVLYNQFLAQSDFEMLRRYADENQHLLWANSQKRLMVVSKEGHDDVKRYWKKNKPS 3026
L C++L +L LS VL+ LY HP TCLAVFR LP + K++VMR LF +Q P+ + W KKE + + L GL+IW+ P +N F+QNLRI + GGGK ++ + ++HARDV LD YA+ERWE +L +M GS + VS D+A++L +GL+ E ITSAGFQFLLLDT +Q+WYFM+Q+L + LV+ LSFLFQ FS LGKDY V+ ++ NFLQ LRE GL QRKR S+RYYPTRLAINL + V+G+ T+ Q ++VVETNYR+YAYTES LQ++L++LF+++ RFP+ V ++RESVQQA+A GI+A QII FLRTRA P ML +TP++PPTITDQI+LWE+ERDRLR+TEGVLYNQFL+Q DFE+L +A E L++ NS KRLMVV+ GH DVKR+WK+ K S
Sbjct: 14 LQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGS----PSAAVSQDLAQLLSQAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYSVEGMSDSLLNFLQHLREFGLVFQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQ-PGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQKHS 461
The following BLAST results are available for this feature:
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