TCONS_00072738-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00072738-protein
Unique Name	TCONS_00072738-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	457

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00072738-protein ID=TCONS_00072738-protein|Name=TCONS_00072738-protein|organism=Clytia hemisphaerica|type=polypeptide|length=457bp
MMESFGKKKLACKDLYGYLLTLSSEVLNGLYDHPFTCLAVFRGLPEIGKH
YVMRTLFTDQAFPEHVILSWCKKEHRNDHKVAVDRLCGLQIWNRVTSPSV
HFEMNKFFQQNLRIGVRGGGKIEEEPLKAVEERHARDVTYLDNYAKERWE
CILQYMTGSQQGMNNVGVSPDVAKVLISSGLLTLNESENNTSITSAGFQF
LLLDTSSQVWYFMVQHLNSKDKAVLVQCLSFLFQTGFSVLGKDYPVKNLT
AEQFNFLQLLREVGLAHQRKRTSKRYYPTRLAINLGTAVTGSTNTISQGQ
SYLVVETNYRVYAYTESALQVSLLSLFTDIKSRFPDFTVGTLSRESVQQA
LACGISASQIIDFLRTRARPQMLSRTPIIPPTITDQIKLWEMERDRLRYT
EGVLYNQFLAQSDFEMLRRYADENQHLLWANSQKRLMVVSKEGHDDVKRY
WKKNKPS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_045148	XLOC_045148	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00072738	TCONS_00072738	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR004598	TFIIH_p52/Tfb2

Vocabulary: **Cellular Component**
Term	Definition
GO:0000439	core TFIIH complex
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0006289	nucleotide-excision repair

Vocabulary: **Molecular Function**
Term	Definition
GO:0004003	ATP-dependent DNA helicase activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006289	nucleotide-excision repair
cellular_component	GO:0000439	core TFIIH complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0004003	ATP-dependent DNA helicase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004598	Transcription factor TFIIH subunit p52/Tfb2	PFAM	PF03849	Tfb2	coord: 18..370 e-value: 6.4E-112 score: 373.9
IPR004598	Transcription factor TFIIH subunit p52/Tfb2	TIGRFAM	TIGR00625	TIGR00625	coord: 17..455 e-value: 6.2E-148 score: 491.4

Blast

[Close]

BLAST of TCONS_00072738-protein vs. Swiss-Prot (Human)
Match: TF2H4 (General transcription factor IIH subunit 4 OS=Homo sapiens GN=GTF2H4 PE=1 SV=1)

HSP 1 Score: 474.937 bits (1221), Expect = 8.587e-166
Identity = 240/453 (52.98%), Postives = 314/453 (69.32%), Query Frame = 0

Query:   10 LACKDLYGYLLTLSSEVLNGLYDHPFTCLAVFRGLPEIGKHYVMRTLFTDQAFPEHVILSWCKKEHRNDHKVAVDRLCGLQIWNRVTSPS--VHFEMNKFFQQNLRIGVRGGGKI-EEEPLKAVEERHARDVTYLDNYAKERWECILQYMTGSQQGMNNVGVSPDVAKVLISSGLLTLNESENNTSITSAGFQFLLLDTSSQVWYFMVQHLNSKDK--AVLVQCLSFLFQTGFSVLGKDYPVKNLTAEQFNFLQLLREVGLAHQRKRTSKRYYPTRLAINLGTAVTGSTNTISQGQSYLVVETNYRVYAYTESALQVSLLSLFTDIKSRFPDFTVGTLSRESVQQALACGISASQIIDFLRTRARPQMLSRTPIIPPTITDQIKLWEMERDRLRYTEGVLYNQFLAQSDFEMLRRYADENQHLLWANSQKRLMVVSKEGHDDVKRYWKKNKPS 457
            L C++L  +L  LS  VL+ LY HP TCLAVFR LP + K++VMR LF +Q  P+  +  W KKE     + +   L GL+IW+    P       +N  F+QNLRI + GGGK   ++  +   ++HARDV  LD YA+ERWE +L +M GS     +  VS D+A++L  +GL+   E      ITSAGFQFLLLDT +Q+WYFM+Q+L +       LV+ LSFLFQ  FS LGKDY V+ ++    NFLQ LRE GL  QRKR S+RYYPTRLAINL + V+G+  T+ Q   ++VVETNYR+YAYTES LQ++L++LF+++  RFP+  V  ++RESVQQA+A GI+A QII FLRTRA P ML +TP++PPTITDQI+LWE+ERDRLR+TEGVLYNQFL+Q DFE+L  +A E   L++ NS KRLMVV+  GH DVKR+WK+ K S
Sbjct:   14 LQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGS----PSAAVSQDLAQLLSQAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYSVEGMSDSLLNFLQHLREFGLVFQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQ-PGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQKHS 461

The following BLAST results are available for this feature:

BLAST of TCONS_00072738-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00072738-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TF2H4	8.587e-166	52.98	General transcription factor IIH subunit 4 OS=Homo...	[more]

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TCONS_00072738-protein (polypeptide) - C. hemisphaerica