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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072732 ID=TCONS_00072732|Name=TCONS_00072732|organism=Clytia hemisphaerica|type=transcript|length=3544bpRun BLAST on NCBI protein sequence of TCONS_00072732-protein >TCONS_00072732-protein ID=TCONS_00072732-protein|Name=TCONS_00072732-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1086bp MQYPPSNIELPSISIADESDLYYDTDGNVERKKKKSSLANNKKILSLNNLRun BLAST on NCBI transcript from alignment at scaffold_82:371240..378865- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072732 ID=TCONS_00072732|Name=TCONS_00072732|organism=Clytia hemisphaerica|type=transcript|length=7626bp|location=Sequence derived from alignment at scaffold_82:371240..378865- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_82:371240..378865- >TCONS_00072732 ID=TCONS_00072732|Name=TCONS_00072732|organism=Clytia hemisphaerica|type=CDS|length=32610bp|location=Sequence derived from alignment at scaffold_82:371240..378865- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00072732 vs. Swiss-Prot (Human)
Match: CNGA3 (Cyclic nucleotide-gated cation channel alpha-3 OS=Homo sapiens GN=CNGA3 PE=1 SV=2) HSP 1 Score: 359.377 bits (921), Expect = 1.756e-108 Identity = 202/516 (39.15%), Postives = 314/516 (60.85%), Query Frame = 2
Query: 728 ILFEPYSTFIYIWSWIVILAIHYNTWVIILRIAFPAAQRNYTGLWFSLDYTADLIYIIDVLVSSRMSFLENGIYVESVKRVTVKYFKSTXXXXXXXXXXXXXXXXXXXQTN-PAFRIPRLIKFFKVFQGKKLVESMTNFPNLVR-GVFWLHIMFLLMHWNCCFFYIISEMEGFGSNKWVYPKLEGLHHILIHR-YIKCMYWSTLVLTTIGEDSTPETTVECAYMIVCYITGIFIFATIVGQAGNVIQNMNASRMEFERQRDNTMQYMKEHNVPTHLQKRVRLWYDYTYSRGRFNGGDDINEITMLPDKMKTELALHVHLETLRKVSFLQKCQPEFLHDLVLKMKLHIFTPGDFIIRKGEIAREMYVISDGMAEVVSESGRV-LKVLQAGDFFGEIGLLSLSAGQ--NRRTADVRSCGYIELFVLSKEDVMSSIRDYPEAQRILAKHGRKRLALGSIVAAGPRDETTSGSSQSDSEIELKITRPDSDEGSCRSLFENGDIENNNTSTVRKNSHTKID 2257
I+ +P S Y W + L + YN +++I R F Q Y LW LDY+AD++Y++DVLV +R FLE G+ V R+ Y +T F LD++SL+P DL YL TN P R RL+KF ++F+ E+ TN+PN+ R G L+I+ +++HWN C ++ IS+ GFG++ WVYP + H + R YI +YWSTL LTTIGE P E +++V ++ G+ IFATIVG G++I NMNASR EF+ + D+ QYM+ V L+ RV W+DY ++ + D+ + LPDK+K E+A++VHL+TL+KV Q C+ L +LVLK++ +F+PGD+I +KG+I +EMY+I++G VV++ G VL G +FGEI +L++ + NRRTA++RS GY +LF LSK+D+M ++ +YPEA++ L + GR+ L +++ DE + + ++E K+ + S + ++ F E N T K ++++
Sbjct: 159 IVVDPSSNLYYRWLTAIALPVFYNWYLLICRACFDELQSEYLMLWLVLDYSADVLYVLDVLVRARTGFLEQGLMVSDTNRLWQHYKTTTQFKLDVLSLVPTDLAYLKVGTNYPEVRFNRLLKFSRLFEFFDRTETRTNYPNMFRIGNLVLYIL-IIIHWNACIYFAISKFIGFGTDSWVYPNISIPEHGRLSRKYIYSLYWSTLTLTTIGETPPPVKDEEYLFVVVDFLVGVLIFATIVGNVGSMISNMNASRAEFQAKIDSIKQYMQFRKVTKDLETRVIRWFDYLWANKK--TVDEKEVLKSLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLRPTVFSPGDYICKKGDIGKEMYIINEGKLAVVADDGVTQFVVLSDGSYFGEISILNIKGSKSGNRRTANIRSIGYSDLFCLSKDDLMEALTEYPEAKKALEEKGRQILMKDNLI-----DEELARAGADPKDLEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLE 666 The following BLAST results are available for this feature:
BLAST of TCONS_00072732 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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