TCONS_00072732-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00072732-protein
Unique NameTCONS_00072732-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1086

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00072732-protein ID=TCONS_00072732-protein|Name=TCONS_00072732-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1086bp
MQYPPSNIELPSISIADESDLYYDTDGNVERKKKKSSLANNKKILSLNNL
AHCHTLKVPNLSDCSDQSGSLPSSLNKVMSYKIPWYRRLYDNRTSSSSFD
CIGREFRSESHRRWSVATQKIKSILAVNDALNGSKTRARDRERSMSIEQK
SHFLDKFSTTRDRRFSGASFDLRRRPDGNHLTDGASNISSVELKELLNDI
KDSKTNVSNCIDDFHEQRRCRFLHILFEPYSTFIYIWSWIVILAIHYNTW
VIILRIAFPAAQRNYTGLWFSLDYTADLIYIIDVLVSSRMSFLENGIYVE
SVKRVTVKYFKSTLFILDLVSLLPLDLLYLFFQTNPAFRIPRLIKFFKVF
QGKKLVESMTNFPNLVRGVFWLHIMFLLMHWNCCFFYIISEMEGFGSNKW
VYPKLEGLHHILIHRYIKCMYWSTLVLTTIGEDSTPETTVECAYMIVCYI
TGIFIFATIVGQAGNVIQNMNASRMEFERQRDNTMQYMKEHNVPTHLQKR
VRLWYDYTYSRGRFNGGDDINEITMLPDKMKTELALHVHLETLRKVSFLQ
KCQPEFLHDLVLKMKLHIFTPGDFIIRKGEIAREMYVISDGMAEVVSESG
RVLKVLQAGDFFGEIGLLSLSAGQNRRTADVRSCGYIELFVLSKEDVMSS
IRDYPEAQRILAKHGRKRLALGSIVAAGPRDETTSGSSQSDSEIELKITR
PDSDEGSCRSLFENGDIENNNTSTVRKNSHTKIDIKDDNVFTDRKDDVTE
TGSVNKYLTSPRNSIFLDTPNHKSRSMVHLKQRASVVTHGHGNVVGPATS
IKSLDKRTLENSLSQSFSRRSSPHRSASRISQVSKTPSPTTNFTSDSGEE
NSDHENHRDESLAKRWLKPRTKKHMQRSNSDMQRRPKRTSNRSKRCVFSD
GESKNYHHWSEIMKRGSSVSTCSYHSAGAANHTTTTTTKHQRHSVATTPT
AKHRDTTTDEDLFLRSMKKLYLETTKHFKKRTHTQVKRLKRKMSDMEQSY
LESYLAKEKEWSNRDEQLRKELFRLEEQMYDMKGKMKEKDEEINKLLGAS
DTSNTNSLVKSNHLEAMVVEEKNRIFTRNHHRAINI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045142XLOC_045142Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00072732TCONS_00072732Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000595cNMP-bd_dom
IPR005821Ion_trans_dom
IPR014710RmlC-like_jellyroll
IPR018488cNMP-bd_CS
IPR018490cNMP-bd-like
Vocabulary: Molecular Function
TermDefinition
GO:0005216ion channel activity
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO:0006811ion transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
molecular_function GO:0005216 ion channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1008..1028
NoneNo IPR availableCOILSCoilCoilcoord: 979..999
NoneNo IPR availableGENE3D1.10.287.630coord: 475..528
e-value: 6.4E-13
score: 48.4
NoneNo IPR availableGENE3D1.10.287.70coord: 380..474
e-value: 2.2E-17
score: 62.1
NoneNo IPR availableGENE3D1.20.120.350coord: 235..379
e-value: 4.8E-6
score: 25.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 678..707
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 932..953
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 811..899
NoneNo IPR availableCDDcd00038CAP_EDcoord: 548..662
e-value: 1.55942E-24
score: 99.7077
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 229..471
IPR000595Cyclic nucleotide-binding domainSMARTSM00100cnmp_10coord: 548..666
e-value: 1.0E-24
score: 98.1
IPR000595Cyclic nucleotide-binding domainPFAMPF00027cNMP_bindingcoord: 569..650
e-value: 2.2E-16
score: 59.5
IPR000595Cyclic nucleotide-binding domainPROSITEPS50042CNMP_BINDING_3coord: 548..668
score: 22.398
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 235..473
e-value: 8.8E-21
score: 74.1
IPR014710RmlC-like jelly roll foldGENE3D2.60.120.10coord: 529..671
e-value: 6.5E-31
score: 106.4
IPR018488Cyclic nucleotide-binding, conserved sitePROSITEPS00889CNMP_BINDING_2coord: 612..633
IPR018488Cyclic nucleotide-binding, conserved sitePROSITEPS00888CNMP_BINDING_1coord: 575..591
IPR018490Cyclic nucleotide-binding-likeSUPERFAMILY51206cAMP-binding domain-likecoord: 472..669

Blast
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BLAST of TCONS_00072732-protein vs. Swiss-Prot (Human)
Match: CNGA3 (Cyclic nucleotide-gated cation channel alpha-3 OS=Homo sapiens GN=CNGA3 PE=1 SV=2)

HSP 1 Score: 384.03 bits (985), Expect = 9.323e-120
Identity = 203/516 (39.34%), Postives = 314/516 (60.85%), Query Frame = 0 
Query:  225 ILFEPYSTFIYIWSWIVILAIHYNTWVIILRIAFPAAQRNYTGLWFSLDYTADLIYIIDVLVSSRMSFLENGIYVESVKRVTVKYFKSTLFILDLVSLLPLDLLYLFFQTN-PAFRIPRLIKFFKVFQGKKLVESMTNFPNLVR-GVFWLHIMFLLMHWNCCFFYIISEMEGFGSNKWVYPKLEGLHHILIHR-YIKCMYWSTLVLTTIGEDSTPETTVECAYMIVCYITGIFIFATIVGQAGNVIQNMNASRMEFERQRDNTMQYMKEHNVPTHLQKRVRLWYDYTYSRGRFNGGDDINEITMLPDKMKTELALHVHLETLRKVSFLQKCQPEFLHDLVLKMKLHIFTPGDFIIRKGEIAREMYVISDGMAEVVSESGRV-LKVLQAGDFFGEIGLLSL--SAGQNRRTADVRSCGYIELFVLSKEDVMSSIRDYPEAQRILAKHGRKRLALGSIVAAGPRDETTSGSSQSDSEIELKITRPDSDEGSCRSLFENGDIENNNTSTVRKNSHTKID 734
            I+ +P S   Y W   + L + YN +++I R  F   Q  Y  LW  LDY+AD++Y++DVLV +R  FLE G+ V    R+   Y  +T F LD++SL+P DL YL   TN P  R  RL+KF ++F+     E+ TN+PN+ R G   L+I+ +++HWN C ++ IS+  GFG++ WVYP +    H  + R YI  +YWSTL LTTIGE   P    E  +++V ++ G+ IFATIVG  G++I NMNASR EF+ + D+  QYM+   V   L+ RV  W+DY ++  +    D+   +  LPDK+K E+A++VHL+TL+KV   Q C+   L +LVLK++  +F+PGD+I +KG+I +EMY+I++G   VV++ G     VL  G +FGEI +L++  S   NRRTA++RS GY +LF LSK+D+M ++ +YPEA++ L + GR+ L   +++     DE  + +     ++E K+ +  S   + ++ F     E N T    K   ++++
Sbjct:  159 IVVDPSSNLYYRWLTAIALPVFYNWYLLICRACFDELQSEYLMLWLVLDYSADVLYVLDVLVRARTGFLEQGLMVSDTNRLWQHYKTTTQFKLDVLSLVPTDLAYLKVGTNYPEVRFNRLLKFSRLFEFFDRTETRTNYPNMFRIGNLVLYIL-IIIHWNACIYFAISKFIGFGTDSWVYPNISIPEHGRLSRKYIYSLYWSTLTLTTIGETPPPVKDEEYLFVVVDFLVGVLIFATIVGNVGSMISNMNASRAEFQAKIDSIKQYMQFRKVTKDLETRVIRWFDYLWANKK--TVDEKEVLKSLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLRPTVFSPGDYICKKGDIGKEMYIINEGKLAVVADDGVTQFVVLSDGSYFGEISILNIKGSKSGNRRTANIRSIGYSDLFCLSKDDLMEALTEYPEAKKALEEKGRQILMKDNLI-----DEELARAGADPKDLEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLE 666
The following BLAST results are available for this feature:
BLAST of TCONS_00072732-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CNGA39.323e-12039.34Cyclic nucleotide-gated cation channel alpha-3 OS=... [more]
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