TCONS_00072727 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072727
Unique NameTCONS_00072727
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1638

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072727 ID=TCONS_00072727|Name=TCONS_00072727|organism=Clytia hemisphaerica|type=transcript|length=1638bp
atatttcttacatgtttcttcGGTCAGACGTAGTGTCGGTCATCAATAAA
TAATTATGGAGCTGTATTTAGTGGCAGGGATTGTTCTCGTGACAATATTA
ATAGTGTTGCTTTTGATTCGATCAAGTAAATCTGGTGATAGCGTCATTCT
TTTGGGCTTATGTGATTCTGGTAAAACTTCATTATTTGGACAGCTTACCA
CCGGAAAAGAATTGAAGACCCAAACTTCCATTAttgaaaacaaaggaaag
aTCAGTACAACTGCCACAAAGAACGGTAAACCGTGGAAATTGATTGACAT
TCCAGGCCATGAAAGAGTTCGAGATAAATATTTCTACAACAACAAAGACA
ATGCAAGAGGTATTCTTTTCCTGATTGACAGTGTCAATTTCCCTCGAGAA
ATTCGTGATGTGGCAGAATGCATGTATGACTTGTTAGCTAACCGCACAAT
GCAAAGAAACAAAGTCTCTGTCATGGTCGCCTGCAACAAACAAGATATTC
CCACCGCGAAATCACACAACGTTATCAAAAGCCAATTGGAAAAAGAATTa
aACAAACTTCGGCAAACTCGTTCGGCAGCTTTACTTGGAATTGACGATTA
TTCATCCAGTAGAAATGCTTTCATCGGTAAGCAAGGGAAAGACTTTGAAT
TCTCGCATGTCAATCCAATCAAAGTTGAGTTTTGCGAATGTAATTTGAAG
AACACACAAGTTGAGGGAGAAGTAAAAGTCGATGGCGTTCGTACTTGGCT
TGAAAAATTGTAGATATTATCAGTGGTTTTTAGGgtgttgttatttttat
ttattagtAATGATAGTAACATATTAGTCCCCGTGTCAATCAAAAATTCa
gctttttctaaatttctaaaaacgAGAATTTTCAGATTTACATTCCTAAA
CCAAAAGACAAACTATCTTATTCCCGTGGTTTTCTAGCCTTTTCAAAAAG
GATCATGCAAATTTGTATAATcaattttgttgtgttttttaaaatattag
tTTGTTTTAATGCAAAATGAATATAAATGTATTTTGAAATGCGAAATTTT
GCATTTATATGGATCAACTATTTACAAATGCGTTTACGATTAGAAAATAA
ATTGCTTTTCTTGTTTAcccaaaatatttaataaaaaatattttgagcga
AAATTTATGAATGTTCGATCTTCTTTACACAATATTAGGTAAATGATTTT
CTTGCCCGATTAAACTGGTTTTGGAGTCAGTTCTTTCTTTATGCTTCTGA
TTGACTTTGACAGGACTTCCAGCTTTATCGCTTTTGGTTTCGTCATCATC
ATAGCCTAAGTTGAAAAGGCTCTCACTAGCCTCTGATTCTGTTGCTAATA
AAGCATCCATGGACAGTTCAGGTGCTTGATCTATACCATCTGTTTCATGT
TCTTCAGGAACTGAGGCTAGTTCAGGTGATTTTTCTGTTACCGACTTTTT
CTGAGGTGAGGGGGGTGCACCTGTTAAACGTCTTGTTTTATCCATCACGC
TTTGACGAACATTTCCAAGCATGTTCATGCCTTGTTCCGCTTTTGACTTG
GCTTGATCAGCTAAATGATGTAACATGGAGGTGACGAGACCGAGAATAAT
GGTCAACGCTGACAAGCCGAGTAAGAAGTAAAGTAGCG
Run BLAST on NCBI

protein sequence of TCONS_00072727-protein

>TCONS_00072727-protein ID=TCONS_00072727-protein|Name=TCONS_00072727-protein|organism=Clytia hemisphaerica|type=polypeptide|length=235bp
MELYLVAGIVLVTILIVLLLIRSSKSGDSVILLGLCDSGKTSLFGQLTTG
KELKTQTSIIENKGKISTTATKNGKPWKLIDIPGHERVRDKYFYNNKDNA
RGILFLIDSVNFPREIRDVAECMYDLLANRTMQRNKVSVMVACNKQDIPT
AKSHNVIKSQLEKELNKLRQTRSAALLGIDDYSSSRNAFIGKQGKDFEFS
HVNPIKVEFCECNLKNTQVEGEVKVDGVRTWLEKL
Run BLAST on NCBI

transcript from alignment at scaffold_82:255391..263562-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072727 ID=TCONS_00072727|Name=TCONS_00072727|organism=Clytia hemisphaerica|type=transcript|length=8172bp|location=Sequence derived from alignment at scaffold_82:255391..263562- (Clytia hemisphaerica)
ATATTTCTTACATGTTTCTTCGGTCAGACGTAGTGTCGGTCATGTGAGTG
AAGTAATTTTTACTTTAATTCAAAGATTTTTCAGTTTGGTTCAATCTAAA
AGATCTTTCTTGCCTGTTTTTGCTGTTTTTATTTTGCATTGCGTATTTAA
AATCGCTCACAACATCTTGATTTTCTAGCTAGCTAATATCTCAGAATATC
TTTTTTGATATATTTTATTGAGATAACTCTAATCCTTGTCTTTGCAATTA
CATTCTTTAGATGACTGATGCTTTTTTTCAGAAACCTGAATTTCCTAGTG
TGACTAACTGGTGGGCAGACCAACTAAAGATGTTCATTTTGAGAGTGAGA
TAGAAATTTTGAACATGAAGGAAAATCCAACATGTGTTACCGTAAGTTGG
TCTAATGTCGACATCCGTCTTCTAATTTCGACATCCTACTTTATAGATAG
GAATAAAAAGAAGGTCGAAATCACTGATAGACTAAAGATTTTTCCTCTCA
TCGGGCGGCTAATCAAAGTCTATCAGCGATTCCGACCTTCCTCAGTTTCT
ATATTGTTCCTATCTCTAAAGAAGGGTTTCAAAATTAGAAGGCGGATGTC
GACATTAGACCAACTTACGGTAGGTTCCATGACCTGTCAAGATTTTTTAA
TATCTTTTTCTTTGGTAAAACAATCTCAAATAAAAAGGAAATTGACAAGG
AATAGATAAGCTTTTCATATAGTCAAACAGAATTATCATAGCTTTTTACC
AAAAAAATATATTACTGTTCAGTAAAGGTCCAATTTCAGCCAAATCCAAC
TTTTGTTCTTGCTGGTGCAGAGCTCTGACATTAGGCTGTCAGACCGAGAT
AAGACGCGGATACTTCAATAAAAAGTTATGCAAGAAAAACCACCATTTCC
ATCTAAAAAGGTCACTTTTTTTGCCAAAGAACTTTTGATAAAACTGTTCC
CCTAATTTCCCCCTTTCACTAGATCTTCCTCTATCTTATGTGCTTCAGAA
AAACCAAAAACATTGCCCTAAAAGCTTAGCCTCGCGTTTATAAATTGAAA
ATCGGGGAAATTCTTTTAGCAAAGTATTCTATTATCATTATCCCTTTATT
TTAAGTTCTGGAACTTTTAAAGAAAAATGGAAAAATAGAAAAGTTGTATT
TATACTCATAGTGTGCAGAGAGGTCCAGCCCCCAGCATTTTTCAGGGGGG
GCTAAGGAAAATAGCCCTCAGCTAAATTCTAGAATTTAAATTCTAAATTC
TAAATTCCTCCACCTTCACAAAGCAAAATATCAAAGAAATTTTGCATGCA
AATTTTCGATAAATTTATTGCGCCGCAGGGAAAATGTTTTTTCAAGAGGG
ATAAAACCTTCCCAACAGCATAGATTTTTAACATAATTTAAAATATCTTC
AACCTATCAGCTCTGCCACCAGTTCTACTACACAGCACTCAGCCCCCCCT
AGCAAGCTAGCCTCCAGTAATTTTTGAAAAATACAGCCCCCAATCAAACA
AAAATGGTTTAGCCCCCCCCTAAGCTCAGGGGGGATTCATTCTATGATAC
TGCTTTATTCATATTTTGAATTTAAAGCTCTCCCTATGTGACTTTTTTTT
GCAAACTTCAAAAACCTGATTTTTTTCCGTTTTTTGCGGGACTCTAACTT
AAGTGCTTGCATGCAGCAATAGGTACAAAGTCCAAATATGCGTTATTCGT
AGATTTTGTTTGAAATTCGGTACCTCTAGTGGGGATAATGACTTAGGGTT
TAGATCTTTTGATAATCAGGATGCCATGTTGAATAATTAAAAACTTCAAA
CAATGACACAGTTAATGCATTATTTTTGTAGACTTGTGGAATGCATACTA
TTTTCATATAATTAGGTATTGGGCTCGCCACGCCTGTGAATCCTTTATAG
CTCCCTACTAACTTGGGCAATGTATCTTTCCATTAAGTCATTGGCGCATG
ATCATCTGCAAAGCTATCTTTTTCATAGTACTGAATCATTCGTTTGTTGA
AGATCACCACCGAAACTACAGACTACCTGCAAGAAAAATAGTTGGGTTAA
TTTATTGAGGTTTCTTCCTCTCAAGTTTGGCTGTGCTGGTCCAAACAGGG
GCACCTCGTGAAGGATGTGTATTTGAAATTGCTTAAAATTCTAACAAGAT
TCTTAATATTTCTTGCAGCAATAAATAATTATGGAGCTGTATTTAGTGGC
AGGGATTGTTCTCGTGACAATATGTAAGTTATCTATATCTTATTAACTTA
ACCTTGCCTCACTCATTTTTAAATGTTTATTATCAAGCTTTTTGGGATTT
GTATTATCGTTATCTGCCAGGCTACGTGATTTTTATCTATTTTTTTTGGC
CTCATCACAAAGTTTTGTATTTACCACTGATCAGTTAAAATAGCAATTAA
AGTTGAACAATTTTTCCAAAGACTGTAATTCTGTTTTGATTTTCAAAAAG
CCATGTGAATCAATTTATCATAATTTTTAATTGCTGCTTATAACATAGCA
AAGAATTGACTGATAAAAGCTATGATGATTTTAAAAGGACGTAGAAATTT
GGTTCTCAAAGCTTAACAAGCAGAATTCTAAAAATTTTTAGAACTATTGT
GACTAAGTTGTAACCAACTAAAATTTACGGAGTTAGAATTTGTAGATAAT
CTTTTAACCTGATGCAATTTCTTCTTTTAGTAATAGTGTTGCTTTTGATT
CGATCAAGTAAATCTGGTGATAGCGTCATTCTTTTGGGCTTATGTGATTC
TGGTAAAACTTCATTATTTGGACAGGTAAGTTTGTTGATATTCTTTTAGT
TTCATAATAATTTAAGAAACATTAGCATATAACAGGTAGCTCTGAAATCT
AAGAAATATTGATAATGTGATCTAAGTCTGCTTGCAATAAGTGTTCACTC
TTATGGGTCTTTTCGTGGAAACAATGTCATTTTACAACTCGCTGATTTTT
CAGCTTACCACCGGAAAAGAATTGAAGACCCAAACTTCCATTATTGAAAA
CAAAGGAAAGATCAGTACAACTGCCACAAAGGTACTCTAACCCCCTCGTA
TATTTTTTAAAAAGCTTTTTTCTTGTGTGTAATAGGTGCTTAGCTATGAC
ATATTTGGTGGCGTATATAACAAGATATCGAGCATTTTAAGGTGTCTATG
AAATTCCATATTGATGTAAGATTCAAAATCAATTCTTATCAATCTACTAT
TTCGTGTACTCATGATATGCACCACTGCAATGACTCCACTAAATTATGCA
ACTTTTCTGTTGTTTTTTGTTCCACCCAACACGTCACTTTTTCTATTGTT
TAAGTGACGCATTGGGCTGAAAAGCTTAAAAGTTTTCAGAAGACTCTCCA
GTGGTGCATATCATGAATATATCGAGAAAAAAGGAACTAATTTACAATTG
TTGGTGCAGTCTTCAGACAATGTAGATCTTTGTTGTATTTATTTCACTGT
ACAAAAAGCTATTTTTTACCTCTTCTTTTCTTCTGATAGAACGGTAAACC
GTGGAAATTGATTGACATTCCAGGCCATGAAAGAGTTCGAGATAAATATT
TCTACAACAACAAAGACAATGCAAGGTAAATTCACAGTAGTTTGATAACA
AAGTAGTTATCCTTGCTGCTATCTCTATGTTTTTAATTTTGTTACGATTA
CTGACACTCTTGTATCCCCTTCCTTAGCATTGAAAATAGCGAATTTATGT
AAAATAAAGACTTTCGCATAAGGGTATTAACTCAGGCACGGGAATTTTGT
TTAATGTAGTTTTTAAGAATATGGAAATAACTTAAGTTATTTGAAACAAG
TGCGTTTTATTTTTAGAGGTATTCTTTTCCTGATTGACAGTGTCAATTTC
CCTCGAGAAATTCGTGATGTGGCAGAGTAAGTCTTGTTTTATAAAAATTT
ATTAAGATTAAGTCTGTTTGCTGTGAAACACGTTTCCCTTAGCTTCGCCA
TTCAAAGTGCTTGAACAGGAGAATATTTCATATGGATCTTCCAAACTGTA
ATTTCAACTCCGTCCAGTAATAAAAAGCCGTTCAACTGAAAATCTTCAAT
CCTGGTTTATTTTACACTTCTTTGATCAGACAATATTAGGTCCCTAAATG
GAGATGCTAGCGTAACAGAAGTGTCATCGTTGACTCACTGTTCTTTTCAA
TTTCACAGATGCATGTATGACTTGTTAGCTAACCGCACAATGCAAAGAAA
CAAAGTCTCTGTCATGGTCGCCTGCAACAAACAAGGTATTGCATTCAAAT
CCTCTGATGATTATATTTTCCAATATGTTGAAATTATTGAAATTAATAAT
TAGTATTATGTATTAGTGATATAATTAGAAGTGTCTGACTTCTAACGATA
TACCAATTCAAATTACAGATATTCCCACCGCGAAATCACACAACGTTATC
AAAAGCCAATTGGAAAAAGAATTGTAAGTTTTATCTTATCTTAGCTTCTA
AAGTTTTCTATCTCTGCTTACCAAGCTAACAATCAAAAGTATGCCACAAA
GTTTACAACTTTATTTTCGTAAAGATAAATCTCTCATTAATCTTGAAAAA
ACGAAATCTATGTATTTCCTTAAAGTTCTTGCATCGGAGGTAACCTCTAT
AAGGTAAGTCTCTATAAGGTAGCCCGTTTCAGTCGAAAAACACCGTTTTT
TTCACTCAAACAGGCAACCCTCTAAGACTTGTAACTTTAAATTCATGTGA
AAAACCATGGTTTATCTGAAATGAGTTTCTAGCACTAAAGGATAAAAAGT
GCATTTTTCATCTTCTTTTTCTAAAATTTTTTAGAATAACTTATTCCAAA
AAATTATAGTGCTATGAGCACAGATCTGTAAAGCCCGAAACTTTAAGCTT
TCTCCAGCAAAAAAAAGTGAAGCGAAAATTGAACTTTTTAAATTTCGTGC
CGATGGATAGGATCTAGCATTTTAAAATTGTTTTTGGAGCGCGAGATAAA
AAAAGTAGTGATTTCTTTGGTAGGGAAACCTACCAAAACTTGCTTCACTT
TTCGATAAAAGGCCGCGGATCTAGGCTATGAGTTATCTTTTCAACGGCGT
ATGATTTGTTGTATTTGAGACATTCGTTGAAAAAATGCAAGAAAACAAGC
ACTACTTACTTACTTAAAAGTGAATGGACTTTTAAAATCTATAAAATCGG
GTGATGAAAGTCGATCTTAACATTCCCCTCTCATTATTTTCAATTTCAGA
AACAAACTTCGGCAAACTCGTTCGGCAGCTTTACTTGGAATTGACGATTA
TTCATCCAGTAGAAATGCTTTCATCGGTAAGCAAGGGAAAGACTTTGAAT
TCTCGCATGTCAATCCAATCAAAGTTGAGTTTTGCGNTTTTTACCTCTTC
TTTTCTTCTGATAGAACGGTAAACCGTGGAAATTGATTGACATTCCAGGC
CATGAAAGAGTTCGAGATAAATATTTCTACAACAACAAAGACAATGCAAG
GTAAATTCACAGTAGTTTGATAACAAAGTAGTTATCCTTGCTGCTATCTC
TATGTTTTTAATTTTGTTACGATTACTGACACTCTTGTATCCCCTTCCTT
AGCATTGAAAATAGCGAATTTATGTAAAATAAAGACTTTCGCATAAGGGT
ATTAACTCAGGCACGGGAATTTTGTTTAATGTAGTTTTTAAGAATATGGA
AATAACTTAAGTTATTTGAAACAAGTGCGTTTTATTTTTAGAGGTATTCT
TTTCCTGATTGACAGTGTCAATTTCCCTCGAGAAATTCGTGATGTGGCAG
AGTAAGTCTTGTTTTATAAAAATTTATTAAGATTAAGTCTGTTTGCTGTG
AAACACGTTTCCCTTAGCTTCGCCATTCAAAGTGCTTGAACAGGAGAATA
TTTTATATGGATCTTCCAAACTGTAATTTCAACTCCGTCCAGTAATAAAA
AGCCGTTCAACTGAAAATCTTCAACCCTGGTTTATTTTACACTTCTTTGA
TCAGACAATATTAGGTCCCTAAATGGAGATGCTAGCGTAACAGAAGTGTC
ATCGTTGACTCACTGTTCTTTTCAATTTCACAGATGCATGTATGACTTGT
TAGCTAACCGCACAATGCAAAGAAACAAAGTCTCTGTCATGGTCGCCTGC
AACAAACAAGGTAACAAATTTATATCCTCTGATGATTATATTTTCCAATA
TTTTGGCAATTATTGAAATTAATAATTAGTATTATGTATTAGTGATATAA
TTAGAAGTGTCTGACGTTTACCCCGTTGCTTTCATTTGTAGTCTTTTAAC
GATATACCAATTCAAATTACAGATATTCCCACCGCGAAATCACACAACGT
TATCAAAAGCCAATTGGAAAAAGAATTGTAAGTTTTATCTTATTTTACCT
TCTAAAGTTTTCTATTCTGCTTTAGCTAACGATCAAAAGTTTGTCACAAA
GTTTACAACTTTATTTTCGTAAAGATAAATCTCTCATTAATCTTGAAAAA
ACGAAATCTATGTATTCCCTTAAAGTTCTTGCATCGGAGGTAACCTCTAT
AAGGTAGCCCGTTTCAGTCGAAAAACACCGTTTTTTTCACTCAAACAGGC
AACCCTCTAAGACTTGTAACTTTAAATTCATGTGAAAACCATGGTTTATC
TGAAATGAGTTTCTAGCACTAAAGGATAAAAAGTGCATTTTTCATCTTCT
TTTTCTAAAATTTTTTAGAATAACTTATTCCAAAAAATTATAGTGCTATG
AGCACAGATCTGTAAAGCCCGAAACTTTAAGCTTTCTCCAGCAAAAAAAA
GTGAAGCGAAAATTGAACTTTTTAAATTTCGTGCCGATGGATAGGATCTA
GCATTTTAAAATTGTTTTTGGAGCGCGAGATAAAAAAAGTAGTGATTTCT
TTGGTAGGGAAACCTACCAAAACTTGCTTCACTTTTCGATAAAAGGCCGC
GGATCTAGGCTATGAGTTATCTTTTCAACGGCGTATGATTTGTTGTATTT
GAGACATTCGTTGAAAAAATGCAAGAAAACAAGCACTACTTACTTACTTA
AAAGTGAATGGACTTTTAAAATCTATAAAATCGGGTGATGAAAGTCGATC
TTAACATTCCCCTCTCATTATTTTCAATTTCAGAAACAAACTTCGGCAAA
CTCGTTCGGCAGCTTTACTTGGAATTGACGATTATTCATCCAGTAGAAAT
GCTTTCATCGGTAAGCAAGGGAAAGACTTTGAATTCTCGCATGTCAATCC
AATCAAAGTTGAGTTTTGCGAATGTAATTTGAAGAACACACAAGTTGAGG
GAGAAGTAAAAGTCGATGGCGTTCGTACTTGGCTTGAAAAATTGTAGATA
TTATCAGTGGTTTTTAGGGTGTTGTTATTTTTATTTATTAGTAATGATAG
TAACATATTAGTCCCCGTGTCAATCAAAAATTCAGCTTTTTCTAAATTTC
TAAAAACGAGAATTTTCAGATTTACATTCCTAAACCAAAAGACAAACTAT
CTTATTCCCGTGGTTTTCTAGCCTTTTCAAAAAGGATCATGCAAATTTGT
ATAATCAATTTTGTTGTGTTTTTTAAAATATTAGTTTGTTTTAATGCAAA
ATGAATATAAATGTATTTTGAAATGCGAAATTTTGCATTTATATGGATCA
ACTATTTACAAATGCGTTTACGATTAGAAAATAAATTGCTTTTCTTGTTT
ACCCAAAATATTTAATAAAAAATATTTTGAGCGAAAATTTATGAATGTTC
GATCTTCTTTACACAATATTAGGTAAATGATTTTCTTGCCCGATTAAACT
GGTTTTGGAGTCAGTTCTTTCTTTATGCTTCTGATTGACTTTGACAGGAC
TTCCAGCTTTATCGCTTTTGGTTTCGTCATCATCATAGCCTAAGTTGAAA
AGGCTCTCACTAGCCTCTGATTCTGTTGCTAATAAAGCATCCATGGACAG
TTCAGGTGCTTGATCTATACCATCTGTTTCATGTTCTTCAGGAACTGAGG
CTAGTTCAGGTGATTTTTCTGTTACCGACTTTTTCTGAGGTGAGGGGGGT
GCACCTGTTAAACGTCTTGTTTTATCCATCACGCTTTGACGAACATTTCC
AAGCATGTTCATGCCTTGTTCCGCTTTTGACTTGGCTTGATCAGCTAAAT
GATGTAACATGGAGGTGACGAGACCGAGAATAATGGTCAACGCTGACAAG
CCGAGTAAGAAGTAAAGTAGCG

Coding sequence (CDS) from alignment at scaffold_82:255391..263562-

>TCONS_00072727 ID=TCONS_00072727|Name=TCONS_00072727|organism=Clytia hemisphaerica|type=CDS|length=6372bp|location=Sequence derived from alignment at scaffold_82:255391..263562- (Clytia hemisphaerica)
AAACAAACTTCGGCAAACTCGTTCGGCAGCTTTACTTGGAATTGACGATT
ATTCATCCAGTAGAAATGCTTTCATCGGTAAGCAAGGGAAAGACTTTGAA
TTCTCGCATGTCAATCCAATCAAAGTTGAGTTTTGCGAATGTAATTTGAA
GAACACACAAGTTGAGGGAGAAGTAAAAGTCGATGGCGTTCGTACTTGGC
TTGAAAAATTGTAGATATTCCCACCGCGAAATCACACAACGTTATCAAAA
GCCAATTGGAAAAAGAATTATGCATGTATGACTTGTTAGCTAACCGCACA
ATGCAAAGAAACAAAGTCTCTGTCATGGTCGCCTGCAACAAACAAGAGGT
ATTCTTTTCCTGATTGACAGTGTCAATTTCCCTCGAGAAATTCGTGATGT
GGCAGAGCCATGAAAGAGTTCGAGATAAATATTTCTACAACAACAAAGAC
AATGCAAGAACGGTAAACCGTGGAAATTGATTGACATTCCAGCTTACCAC
CGGAAAAGAATTGAAGACCCAAACTTCCATTATTGAAAACAAAGGAAAGA
TCAGTACAACTGCCACAAAGTAATAGTGTTGCTTTTGATTCGATCAAGTA
AATCTGGTGATAGCGTCATTCTTTTGGGCTTATGTGATTCTGGTAAAACT
TCATTATTTGGACAGATGGAGCTGTATTTAGTGGCAGGGATTGTTCTCGT
GACAATATAAACAAACTTCGGCAAACTCGTTCGGCAGCTTTACTTGGAAT
TGACGATTATTCATCCAGTAGAAATGCTTTCATCGGTAAGCAAGGGAAAG
ACTTTGAATTCTCGCATGTCAATCCAATCAAAGTTGAGTTTTGCGAATGT
AATTTGAAGAACACACAAGTTGAGGGAGAAGTAAAAGTCGATGGCGTTCG
TACTTGGCTTGAAAAATTGTAGATATTCCCACCGCGAAATCACACAACGT
TATCAAAAGCCAATTGGAAAAAGAATTATGCATGTATGACTTGTTAGCTA
ACCGCACAATGCAAAGAAACAAAGTCTCTGTCATGGTCGCCTGCAACAAA
CAAGAGGTATTCTTTTCCTGATTGACAGTGTCAATTTCCCTCGAGAAATT
CGTGATGTGGCAGAGCCATGAAAGAGTTCGAGATAAATATTTCTACAACA
ACAAAGACAATGCAAGAACGGTAAACCGTGGAAATTGATTGACATTCCAG
CTTACCACCGGAAAAGAATTGAAGACCCAAACTTCCATTATTGAAAACAA
AGGAAAGATCAGTACAACTGCCACAAAGTAATAGTGTTGCTTTTGATTCG
ATCAAGTAAATCTGGTGATAGCGTCATTCTTTTGGGCTTATGTGATTCTG
GTAAAACTTCATTATTTGGACAGATGGAGCTGTATTTAGTGGCAGGGATT
GTTCTCGTGACAATATAAACAAACTTCGGCAAACTCGTTCGGCAGCTTTA
CTTGGAATTGACGATTATTCATCCAGTAGAAATGCTTTCATCGGTAAGCA
AGGGAAAGACTTTGAATTCTCGCATGTCAATCCAATCAAAGTTGAGTTTT
GCGAATGTAATTTGAAGAACACACAAGTTGAGGGAGAAGTAAAAGTCGAT
GGCGTTCGTACTTGGCTTGAAAAATTGTAGATATTCCCACCGCGAAATCA
CACAACGTTATCAAAAGCCAATTGGAAAAAGAATTATGCATGTATGACTT
GTTAGCTAACCGCACAATGCAAAGAAACAAAGTCTCTGTCATGGTCGCCT
GCAACAAACAAGAGGTATTCTTTTCCTGATTGACAGTGTCAATTTCCCTC
GAGAAATTCGTGATGTGGCAGAGCCATGAAAGAGTTCGAGATAAATATTT
CTACAACAACAAAGACAATGCAAGAACGGTAAACCGTGGAAATTGATTGA
CATTCCAGCTTACCACCGGAAAAGAATTGAAGACCCAAACTTCCATTATT
GAAAACAAAGGAAAGATCAGTACAACTGCCACAAAGTAATAGTGTTGCTT
TTGATTCGATCAAGTAAATCTGGTGATAGCGTCATTCTTTTGGGCTTATG
TGATTCTGGTAAAACTTCATTATTTGGACAGATGGAGCTGTATTTAGTGG
CAGGGATTGTTCTCGTGACAATATAAACAAACTTCGGCAAACTCGTTCGG
CAGCTTTACTTGGAATTGACGATTATTCATCCAGTAGAAATGCTTTCATC
GGTAAGCAAGGGAAAGACTTTGAATTCTCGCATGTCAATCCAATCAAAGT
TGAGTTTTGCGAATGTAATTTGAAGAACACACAAGTTGAGGGAGAAGTAA
AAGTCGATGGCGTTCGTACTTGGCTTGAAAAATTGTAGATATTCCCACCG
CGAAATCACACAACGTTATCAAAAGCCAATTGGAAAAAGAATTATGCATG
TATGACTTGTTAGCTAACCGCACAATGCAAAGAAACAAAGTCTCTGTCAT
GGTCGCCTGCAACAAACAAGAGGTATTCTTTTCCTGATTGACAGTGTCAA
TTTCCCTCGAGAAATTCGTGATGTGGCAGAGCCATGAAAGAGTTCGAGAT
AAATATTTCTACAACAACAAAGACAATGCAAGAACGGTAAACCGTGGAAA
TTGATTGACATTCCAGCTTACCACCGGAAAAGAATTGAAGACCCAAACTT
CCATTATTGAAAACAAAGGAAAGATCAGTACAACTGCCACAAAGTAATAG
TGTTGCTTTTGATTCGATCAAGTAAATCTGGTGATAGCGTCATTCTTTTG
GGCTTATGTGATTCTGGTAAAACTTCATTATTTGGACAGATGGAGCTGTA
TTTAGTGGCAGGGATTGTTCTCGTGACAATATAAACAAACTTCGGCAAAC
TCGTTCGGCAGCTTTACTTGGAATTGACGATTATTCATCCAGTAGAAATG
CTTTCATCGGTAAGCAAGGGAAAGACTTTGAATTCTCGCATGTCAATCCA
ATCAAAGTTGAGTTTTGCGAATGTAATTTGAAGAACACACAAGTTGAGGG
AGAAGTAAAAGTCGATGGCGTTCGTACTTGGCTTGAAAAATTGTAGATAT
TCCCACCGCGAAATCACACAACGTTATCAAAAGCCAATTGGAAAAAGAAT
TATGCATGTATGACTTGTTAGCTAACCGCACAATGCAAAGAAACAAAGTC
TCTGTCATGGTCGCCTGCAACAAACAAGAGGTATTCTTTTCCTGATTGAC
AGTGTCAATTTCCCTCGAGAAATTCGTGATGTGGCAGAGCCATGAAAGAG
TTCGAGATAAATATTTCTACAACAACAAAGACAATGCAAGAACGGTAAAC
CGTGGAAATTGATTGACATTCCAGCTTACCACCGGAAAAGAATTGAAGAC
CCAAACTTCCATTATTGAAAACAAAGGAAAGATCAGTACAACTGCCACAA
AGTAATAGTGTTGCTTTTGATTCGATCAAGTAAATCTGGTGATAGCGTCA
TTCTTTTGGGCTTATGTGATTCTGGTAAAACTTCATTATTTGGACAGATG
GAGCTGTATTTAGTGGCAGGGATTGTTCTCGTGACAATATAAACAAACTT
CGGCAAACTCGTTCGGCAGCTTTACTTGGAATTGACGATTATTCATCCAG
TAGAAATGCTTTCATCGGTAAGCAAGGGAAAGACTTTGAATTCTCGCATG
TCAATCCAATCAAAGTTGAGTTTTGCGAATGTAATTTGAAGAACACACAA
GTTGAGGGAGAAGTAAAAGTCGATGGCGTTCGTACTTGGCTTGAAAAATT
GTAGATATTCCCACCGCGAAATCACACAACGTTATCAAAAGCCAATTGGA
AAAAGAATTATGCATGTATGACTTGTTAGCTAACCGCACAATGCAAAGAA
ACAAAGTCTCTGTCATGGTCGCCTGCAACAAACAAGAGGTATTCTTTTCC
TGATTGACAGTGTCAATTTCCCTCGAGAAATTCGTGATGTGGCAGAGCCA
TGAAAGAGTTCGAGATAAATATTTCTACAACAACAAAGACAATGCAAGAA
CGGTAAACCGTGGAAATTGATTGACATTCCAGCTTACCACCGGAAAAGAA
TTGAAGACCCAAACTTCCATTATTGAAAACAAAGGAAAGATCAGTACAAC
TGCCACAAAGTAATAGTGTTGCTTTTGATTCGATCAAGTAAATCTGGTGA
TAGCGTCATTCTTTTGGGCTTATGTGATTCTGGTAAAACTTCATTATTTG
GACAGATGGAGCTGTATTTAGTGGCAGGGATTGTTCTCGTGACAATATAA
ACAAACTTCGGCAAACTCGTTCGGCAGCTTTACTTGGAATTGACGATTAT
TCATCCAGTAGAAATGCTTTCATCGGTAAGCAAGGGAAAGACTTTGAATT
CTCGCATGTCAATCCAATCAAAGTTGAGTTTTGCGAATGTAATTTGAAGA
ACACACAAGTTGAGGGAGAAGTAAAAGTCGATGGCGTTCGTACTTGGCTT
GAAAAATTGTAGATATTCCCACCGCGAAATCACACAACGTTATCAAAAGC
CAATTGGAAAAAGAATTATGCATGTATGACTTGTTAGCTAACCGCACAAT
GCAAAGAAACAAAGTCTCTGTCATGGTCGCCTGCAACAAACAAGAGGTAT
TCTTTTCCTGATTGACAGTGTCAATTTCCCTCGAGAAATTCGTGATGTGG
CAGAGCCATGAAAGAGTTCGAGATAAATATTTCTACAACAACAAAGACAA
TGCAAGAACGGTAAACCGTGGAAATTGATTGACATTCCAGCTTACCACCG
GAAAAGAATTGAAGACCCAAACTTCCATTATTGAAAACAAAGGAAAGATC
AGTACAACTGCCACAAAGTAATAGTGTTGCTTTTGATTCGATCAAGTAAA
TCTGGTGATAGCGTCATTCTTTTGGGCTTATGTGATTCTGGTAAAACTTC
ATTATTTGGACAGATGGAGCTGTATTTAGTGGCAGGGATTGTTCTCGTGA
CAATATAAACAAACTTCGGCAAACTCGTTCGGCAGCTTTACTTGGAATTG
ACGATTATTCATCCAGTAGAAATGCTTTCATCGGTAAGCAAGGGAAAGAC
TTTGAATTCTCGCATGTCAATCCAATCAAAGTTGAGTTTTGCGAATGTAA
TTTGAAGAACACACAAGTTGAGGGAGAAGTAAAAGTCGATGGCGTTCGTA
CTTGGCTTGAAAAATTGTAGATATTCCCACCGCGAAATCACACAACGTTA
TCAAAAGCCAATTGGAAAAAGAATTATGCATGTATGACTTGTTAGCTAAC
CGCACAATGCAAAGAAACAAAGTCTCTGTCATGGTCGCCTGCAACAAACA
AGAGGTATTCTTTTCCTGATTGACAGTGTCAATTTCCCTCGAGAAATTCG
TGATGTGGCAGAGCCATGAAAGAGTTCGAGATAAATATTTCTACAACAAC
AAAGACAATGCAAGAACGGTAAACCGTGGAAATTGATTGACATTCCAGCT
TACCACCGGAAAAGAATTGAAGACCCAAACTTCCATTATTGAAAACAAAG
GAAAGATCAGTACAACTGCCACAAAGTAATAGTGTTGCTTTTGATTCGAT
CAAGTAAATCTGGTGATAGCGTCATTCTTTTGGGCTTATGTGATTCTGGT
AAAACTTCATTATTTGGACAGATGGAGCTGTATTTAGTGGCAGGGATTGT
TCTCGTGACAATATAAACAAACTTCGGCAAACTCGTTCGGCAGCTTTACT
TGGAATTGACGATTATTCATCCAGTAGAAATGCTTTCATCGGTAAGCAAG
GGAAAGACTTTGAATTCTCGCATGTCAATCCAATCAAAGTTGAGTTTTGC
GAATGTAATTTGAAGAACACACAAGTTGAGGGAGAAGTAAAAGTCGATGG
CGTTCGTACTTGGCTTGAAAAATTGTAGATATTCCCACCGCGAAATCACA
CAACGTTATCAAAAGCCAATTGGAAAAAGAATTATGCATGTATGACTTGT
TAGCTAACCGCACAATGCAAAGAAACAAAGTCTCTGTCATGGTCGCCTGC
AACAAACAAGAGGTATTCTTTTCCTGATTGACAGTGTCAATTTCCCTCGA
GAAATTCGTGATGTGGCAGAGCCATGAAAGAGTTCGAGATAAATATTTCT
ACAACAACAAAGACAATGCAAGAACGGTAAACCGTGGAAATTGATTGACA
TTCCAGCTTACCACCGGAAAAGAATTGAAGACCCAAACTTCCATTATTGA
AAACAAAGGAAAGATCAGTACAACTGCCACAAAGTAATAGTGTTGCTTTT
GATTCGATCAAGTAAATCTGGTGATAGCGTCATTCTTTTGGGCTTATGTG
ATTCTGGTAAAACTTCATTATTTGGACAGATGGAGCTGTATTTAGTGGCA
GGGATTGTTCTCGTGACAATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045139XLOC_045139Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072727-exon-scaffold_82-1575043694:263520..263562TCONS_00072727-exon-scaffold_82-1575043694:263520..263562Clytia hemisphaericaexon
TCONS_00072727-exon-scaffold_82-1575043694:261340..261394TCONS_00072727-exon-scaffold_82-1575043694:261340..261394Clytia hemisphaericaexon
TCONS_00072727-exon-scaffold_82-1575043694:260788..260882TCONS_00072727-exon-scaffold_82-1575043694:260788..260882Clytia hemisphaericaexon
TCONS_00072727-exon-scaffold_82-1575043694:260532..260609TCONS_00072727-exon-scaffold_82-1575043694:260532..260609Clytia hemisphaericaexon
TCONS_00072727-exon-scaffold_82-1575043694:260040..260073TCONS_00072727-exon-scaffold_82-1575043694:260040..260073Clytia hemisphaericaexon
TCONS_00072727-exon-scaffold_82-1575043694:258113..258164TCONS_00072727-exon-scaffold_82-1575043694:258113..258164Clytia hemisphaericaexon
TCONS_00072727-exon-scaffold_82-1575043694:257812..257871TCONS_00072727-exon-scaffold_82-1575043694:257812..257871Clytia hemisphaericaexon
TCONS_00072727-exon-scaffold_82-1575043694:257453..257529TCONS_00072727-exon-scaffold_82-1575043694:257453..257529Clytia hemisphaericaexon
TCONS_00072727-exon-scaffold_82-1575043694:257236..257290TCONS_00072727-exon-scaffold_82-1575043694:257236..257290Clytia hemisphaericaexon
TCONS_00072727-exon-scaffold_82-1575043694:255391..256479TCONS_00072727-exon-scaffold_82-1575043694:255391..256479Clytia hemisphaericaexon
TCONS_00072727-exon-scaffold_82-1510915933:263520..263562TCONS_00072727-exon-scaffold_82-1510915933:263520..263562Clytia hemisphaericaexon
TCONS_00072727-exon-scaffold_82-1510915933:261340..261394TCONS_00072727-exon-scaffold_82-1510915933:261340..261394Clytia hemisphaericaexon
TCONS_00072727-exon-scaffold_82-1510915933:260788..260882TCONS_00072727-exon-scaffold_82-1510915933:260788..260882Clytia hemisphaericaexon
TCONS_00072727-exon-scaffold_82-1510915933:260532..260609TCONS_00072727-exon-scaffold_82-1510915933:260532..260609Clytia hemisphaericaexon
TCONS_00072727-exon-scaffold_82-1510915933:260040..260073TCONS_00072727-exon-scaffold_82-1510915933:260040..260073Clytia hemisphaericaexon
TCONS_00072727-exon-scaffold_82-1510915933:258113..258164TCONS_00072727-exon-scaffold_82-1510915933:258113..258164Clytia hemisphaericaexon
TCONS_00072727-exon-scaffold_82-1510915933:257812..257871TCONS_00072727-exon-scaffold_82-1510915933:257812..257871Clytia hemisphaericaexon
TCONS_00072727-exon-scaffold_82-1510915933:257453..257529TCONS_00072727-exon-scaffold_82-1510915933:257453..257529Clytia hemisphaericaexon
TCONS_00072727-exon-scaffold_82-1510915933:257236..257290TCONS_00072727-exon-scaffold_82-1510915933:257236..257290Clytia hemisphaericaexon
TCONS_00072727-exon-scaffold_82-1510915933:255391..256479TCONS_00072727-exon-scaffold_82-1510915933:255391..256479Clytia hemisphaericaexon
TCONS_00072727-exon-scaffold_82-1491911889:263520..263562TCONS_00072727-exon-scaffold_82-1491911889:263520..263562Clytia hemisphaericaexon
TCONS_00072727-exon-scaffold_82-1491911889:261340..261394TCONS_00072727-exon-scaffold_82-1491911889:261340..261394Clytia hemisphaericaexon
TCONS_00072727-exon-scaffold_82-1491911889:260788..260882TCONS_00072727-exon-scaffold_82-1491911889:260788..260882Clytia hemisphaericaexon
TCONS_00072727-exon-scaffold_82-1491911889:260532..260609TCONS_00072727-exon-scaffold_82-1491911889:260532..260609Clytia hemisphaericaexon
TCONS_00072727-exon-scaffold_82-1491911889:260040..260073TCONS_00072727-exon-scaffold_82-1491911889:260040..260073Clytia hemisphaericaexon
TCONS_00072727-exon-scaffold_82-1491911889:258113..258164TCONS_00072727-exon-scaffold_82-1491911889:258113..258164Clytia hemisphaericaexon
TCONS_00072727-exon-scaffold_82-1491911889:257812..257871TCONS_00072727-exon-scaffold_82-1491911889:257812..257871Clytia hemisphaericaexon
TCONS_00072727-exon-scaffold_82-1491911889:257453..257529TCONS_00072727-exon-scaffold_82-1491911889:257453..257529Clytia hemisphaericaexon
TCONS_00072727-exon-scaffold_82-1491911889:257236..257290TCONS_00072727-exon-scaffold_82-1491911889:257236..257290Clytia hemisphaericaexon
TCONS_00072727-exon-scaffold_82-1491911889:255391..256479TCONS_00072727-exon-scaffold_82-1491911889:255391..256479Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072727-proteinTCONS_00072727-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_82supercontigscaffold_82:255391..263562 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.9841	11.9273	6.9497	8.13462	9.23735	7.21642	34.1006	34.0322	4.70496	5.2114	2.04512	3.09627	4.96743	4.45446	2.25332	2.89101	2.36948	2.03768	0.611387	2.08012	4.30637	1.67426	4.64689	5.14648	13.8766	15.2345	3.07121	1.89534	3.40909	2.85008
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019009SRP_receptor_beta_su
IPR027417P-loop_NTPase
Blast
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BLAST of TCONS_00072727 vs. Swiss-Prot (Human)
Match: SRPRB (Signal recognition particle receptor subunit beta OS=Homo sapiens GN=SRPRB PE=1 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 1.404e-49
Identity = 99/215 (46.05%), Postives = 137/215 (63.72%), Query Frame = 2 
Query:  119 RSSKSGD-SVILLGLCDSGKTSLFGQLTTGKELKTQTSIIENKGKISTTATKNGKPWKLIDIPGHERVRDKYFYNNKDNARGILFLIDSVNFPREIRDVAECMYDLLANRTMQRNKVSVMVACNKQDIPTAKSHNVIKSQLEKELNKLRQTRSAALLGIDDYSSSRNAFIGKQGKDFEFSHVNPIKVEFCECNLKNTQVE-GEVKVDGVRTWLEK 757
            RS +S   +V+L+GLCDSGKT LF +L TG    TQTSI ++   +       G    LID+PGHE +R ++    K +AR I+F++DS  F RE++DVAE +Y +L +    +N  S ++ACNKQDI  AKS  +I+ QLEKELN LR TRSAA   +D  SS+  A +GK+GK+FEFS + P+KVEF EC+ K  + + G   +  +  WL K
Sbjct:   58 RSRRSSQRAVLLVGLCDSGKTLLFVRLLTGLYRDTQTSITDSCA-VYRVNNNRGNSLTLIDLPGHESLRLQFLERFKSSARAIVFVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDS-SSTAPAQLGKKGKEFEFSQL-PLKVEFLECSAKGGRGDVGSADIQDLEKWLAK 269
The following BLAST results are available for this feature:
BLAST of TCONS_00072727 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SRPRB1.404e-4946.05Signal recognition particle receptor subunit beta ... [more]
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