TCONS_00072727-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00072727-protein
Unique NameTCONS_00072727-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length235

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00072727-protein ID=TCONS_00072727-protein|Name=TCONS_00072727-protein|organism=Clytia hemisphaerica|type=polypeptide|length=235bp
MELYLVAGIVLVTILIVLLLIRSSKSGDSVILLGLCDSGKTSLFGQLTTG
KELKTQTSIIENKGKISTTATKNGKPWKLIDIPGHERVRDKYFYNNKDNA
RGILFLIDSVNFPREIRDVAECMYDLLANRTMQRNKVSVMVACNKQDIPT
AKSHNVIKSQLEKELNKLRQTRSAALLGIDDYSSSRNAFIGKQGKDFEFS
HVNPIKVEFCECNLKNTQVEGEVKVDGVRTWLEKL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045139XLOC_045139Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00072727TCONS_00072727Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019009SRP_receptor_beta_su
IPR027417P-loop_NTPase
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 151..171
NoneNo IPR availableGENE3D3.40.50.300coord: 21..234
e-value: 2.3E-22
score: 79.0
IPR019009Signal recognition particle receptor, beta subunitPFAMPF09439SRPRBcoord: 28..202
e-value: 2.2E-56
score: 190.1
IPR019009Signal recognition particle receptor, beta subunitCDDcd04105SR_betacoord: 29..235
e-value: 2.13913E-69
score: 212.952
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 29..166

Blast
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BLAST of TCONS_00072727-protein vs. Swiss-Prot (Human)
Match: SRPRB (Signal recognition particle receptor subunit beta OS=Homo sapiens GN=SRPRB PE=1 SV=3)

HSP 1 Score: 177.563 bits (449), Expect = 3.087e-55
Identity = 101/218 (46.33%), Postives = 140/218 (64.22%), Query Frame = 0 
Query:   20 LIRSSKSGD-SVILLGLCDSGKTSLFGQLTTGKELKTQTSIIENKGKISTTATKNGKPWKLIDIPGHERVRDKYFYNNKDNARGILFLIDSVNFPREIRDVAECMYDLLANRTMQRNKVSVMVACNKQDIPTAKSHNVIKSQLEKELNKLRQTRSAALLGIDDYSSSRNAFIGKQGKDFEFSHVNPIKVEFCECNLKNTQVE-GEVKVDGVRTWLEKL 235
            LIRS +S   +V+L+GLCDSGKT LF +L TG    TQTSI ++   +       G    LID+PGHE +R ++    K +AR I+F++DS  F RE++DVAE +Y +L +    +N  S ++ACNKQDI  AKS  +I+ QLEKELN LR TRSAA   +D  SS+  A +GK+GK+FEFS + P+KVEF EC+ K  + + G   +  +  WL K+
Sbjct:   56 LIRSRRSSQRAVLLVGLCDSGKTLLFVRLLTGLYRDTQTSITDSCA-VYRVNNNRGNSLTLIDLPGHESLRLQFLERFKSSARAIVFVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDS-SSTAPAQLGKKGKEFEFSQL-PLKVEFLECSAKGGRGDVGSADIQDLEKWLAKI 270
The following BLAST results are available for this feature:
BLAST of TCONS_00072727-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SRPRB3.087e-5546.33Signal recognition particle receptor subunit beta ... [more]
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