TCONS_00072711 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072711
Unique NameTCONS_00072711
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1652

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072711 ID=TCONS_00072711|Name=TCONS_00072711|organism=Clytia hemisphaerica|type=transcript|length=1652bp
TAAAAAGCAAATATGAGCACAAGGAAAAGCACAAGAAAAAGCaccaaaaa
acaaaacacaggAAATGAAGAGAATGATGAAGTCGACGATGTGATTGAGA
AAAAACTATGGATTCACGAGAAATCGAAAGAATATTCGTCCTCGTTATCC
ATCCACGGTTTATCAAGAACCATCCACACAGATTCTCATCTTGAACGTAT
CTTCTGGATGATATCCTTGATGTTGGCTGTTGGTATCGCCTTCTTAATGG
TGCAAAGCCTATTAATCAAGTTCTGGAATCAAGACGTGTACATTAATACT
GAAAGTAGAGTTACCAGTAAGAATTATTTTCCGTCGGTCACTTTCTGTTT
GGAGGAGATAACGGTTAAAGATACTTATTGCGAGTATCCAGCCAATGATG
ATCTACATGGAGCACTTACGGGCCGTCCTGAAGAATGTACTACGGGTCGT
TGGTGGGGGCTTCCAAAGTTGAGGATTCCCAATAATGTGTTTGAGCTGAA
CGCACAAGGCATGATAAGTATTGTTACGTTACCTCTTCAGACTTTCTTTG
TGAATTGTCCGTGGAAAGGTGTATGTCTCAATAAAGATATGGTGCAAAAG
AATTTCAAGCCGTTGGTTGAAAATGAATTATGCTTAACATGGAATCCAGA
TGGCGAATTTTACAACCTGAAGAATCGCCTTGAATTGAATGTGAAGATTA
ATCATAACGATTACCGAGGGAAAGGAAAAGGATTTGTAGCTTATGTGCAC
CACCACACTGAATCACCGATCTCATCCGAACGGAAAATTCCTCTCTCAGA
TACGCTGAATACTGAAATCTCCTTTAAGAAGATCGTGAAGGTCAGAAAGA
AACGAGGCAATCCGCAATCATGCGAAGATAACTATTATAATAACAGTAAA
AATATATTCCCTGGTCGATACACTGTTGAAGCGTGCCTTGATTCTTACAC
TTGTATTCAATCACTGATGCTGTGCGGAGATTCAATGGACTTTTGTAAAG
ATTATCTACCGACGCAGCTCCTTGAGAAATATTGGATGAATACAACATAC
GAAGAGGTCTATAGCTGCATGAGGAAAAGCTACAATGAAGGCTTATTTTA
TGCTGACGGTGCAGTTTGTTTGCCGCCTTGTCAAGAGACGCAATATCAGG
TCTCATCGACAGTTAGTGCACCAGGAACAAGTCTGGTGACTTTGATGTAT
CCTGAACGAAATATTTACGAATACCAAGAAGAAAAGGAGGTTTACACATG
GGAGGATTTCATTGCAGGCATTGGTGGTATGGTTGGGTTGTTCTGTGGTT
TTTCTATTCTCTCTATTGCTGAACTGTTCGTATATATTGGTTTGAAATGT
GTTTTCAAATGCAGGGGTACTGCAAACCAAGGGACTGATGGTAATGTTGA
GGCTGGTGATACTATCAAAGGAAGACAATCAGCTATGAAGAATGAACTTG
GAAGTAATAAGGGACATACAAATCCTGTTTTCAGTTAATTGAACTGTAAT
TCAAAACCTACGTACACTTAATGTACTCACACGAAAGCACTAGTCGCCGT
ACATAAGTGAATACACCGGCAGATTTTTCTAAATAATTATGACTATCAAA
GCACCCATATACGCGCGTTCTTCcttaaatcttttaaaaatctttataat
tg
Run BLAST on NCBI

protein sequence of TCONS_00072711-protein

>TCONS_00072711-protein ID=TCONS_00072711-protein|Name=TCONS_00072711-protein|organism=Clytia hemisphaerica|type=polypeptide|length=491bp
MSTRKSTRKSTKKQNTGNEENDEVDDVIEKKLWIHEKSKEYSSSLSIHGL
SRTIHTDSHLERIFWMISLMLAVGIAFLMVQSLLIKFWNQDVYINTESRV
TSKNYFPSVTFCLEEITVKDTYCEYPANDDLHGALTGRPEECTTGRWWGL
PKLRIPNNVFELNAQGMISIVTLPLQTFFVNCPWKGVCLNKDMVQKNFKP
LVENELCLTWNPDGEFYNLKNRLELNVKINHNDYRGKGKGFVAYVHHHTE
SPISSERKIPLSDTLNTEISFKKIVKVRKKRGNPQSCEDNYYNNSKNIFP
GRYTVEACLDSYTCIQSLMLCGDSMDFCKDYLPTQLLEKYWMNTTYEEVY
SCMRKSYNEGLFYADGAVCLPPCQETQYQVSSTVSAPGTSLVTLMYPERN
IYEYQEEKEVYTWEDFIAGIGGMVGLFCGFSILSIAELFVYIGLKCVFKC
RGTANQGTDGNVEAGDTIKGRQSAMKNELGSNKGHTNPVFS
Run BLAST on NCBI

transcript from alignment at scaffold_82:513727..516814+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072711 ID=TCONS_00072711|Name=TCONS_00072711|organism=Clytia hemisphaerica|type=transcript|length=3088bp|location=Sequence derived from alignment at scaffold_82:513727..516814+ (Clytia hemisphaerica)
TAAAAAGCAAATATGAGCACAAGGAAAAGCACAAGAAAAAGCaccaaaaa acaaaacacaggAAATGAAGAGAATGATGAAGTCGACGATGTGATTGGTG AGTGAAGTTTCAACTTAATATCATTATAAACACttagattttaaattttc tgacACGAGCTAGTTTTGTAGGACAATACATAATCCTACATAACTGAAAG CAAAAAAAACTGTCTGTAAACAGTTAAAATGTTATCACAGATTGGGAAAG CCGACACATTTTATCGAGGTGTTGTTGCCTGAGTTTGCTTGAAGAATTTC GGTAATCACCCTTTATTAGCCAATGTccgtgaattaaaaaaaacactgaG ATTGTTATTCATTTTATATTCCTTACTTTTTCCCAGAGAAAAAACTATGG ATTCACGAGAAATCGAAAGAATATTCGTCCTCGTTATCCATCCACGGTTT ATCAAGAACCATCCACACAGATTCTCATCTTGAACGTATCTTCTGGATGA TATCCTTGATGTTGGCTGTTGGTATCGCCTTCTTAATGGTGCAAAGCCTA TTAATCAAGTTCTGGAATCAAGACGTGTACATTAATACTGAAAGTAGAGT TACCAGTAAGAATTATTTTCCGTCGGTCACTTTCTGTTTGGAGGAGATAA CGGTTAAAGATACTTATTGCGAGTATCCAGCCAATGATGATCTACATGGA GCACTTACGGGCCGTCCTGAAGAATGTACTACGGGTCGTTGGTGGGGGCT TCCAAAGTTGAGGATTCCCAATAATGTGTTTGAGCTGAACGCACAAGGCA TGATAAGTATTGTTACGTTACCTCTTCAGACTTTCTTTGTGAATTGTCCG NGTTTCAAAAGTTCGGATAAATTTGATTAATTAGAATTCTATGTATAGAA GAAATAAATTTCGAAGATGGAAATGTTTCCTATTCAAGAAAGACCAGTAA GCTTCACAAGGAGGAGACATATTAGCAGGGGGTTGCAACACACCAAAATC AAACCTTTGCTTTGAATATTCAAACTGAAGGAGCTTGTAGAATACAGATT CACGCTACTACGACATCTAGCTGGTAAAACCTATGAACAGAACTACAGCT CGTTTCGATTATCTGAATCCCGCTATTTCATCATCAGTAATCGTCAGTAA AAAGCAAATATGAGCACAAGGAAAAGCACAAGAAAAAGCaccaaaaaaca aaacacaggAAATGAAGAGAATGATGAAGTCGACGATGTGATTGGTGAGT GAAGTTTCAACTTAATATCATTATAAACACttagattttaaattttctga cACGAGCTAGTTTTGTAGGACAATACATAATCCTACATAACTGAAAGCAA AAAAAACTGTCTGTAAACAGTTAAAATGTTATCACAGATTGGGAAAGCCG ACACATTTTATCGAGGTGTTGTTGCCTGAGTTTGCTTGAAGAATTTCGGT AATCACCCTTTATTAGCCAATGTccgtgaattaaaaaaaacactgaGATT GTTATTCATTTTATATTCCTTACTTTTTCCCAGAGAAAAAACTATGGATT CACGAGAAATCGAAAGAATATTCGTCCTCGTTATCCATCCACGGTTTATC AAGAACCATCCACACAGATTCTCATCTTGAACGTATCTTCTGGATGATAT CCTTGATGTTGGCTGTTGGTATCGCCTTCTTAATGGTGCAAAGCCTATTA ATCAAGTTCTGGAATCAAGACGTGTACATTAATACTGAAAGTAGAGTTAC CAGTAAGAATTATTTTCCGTCGGTCACTTTCTGTTTGGAGGAGATAACGG TTAAAGATACTTATTGCGAGTATCCAGCCAATGATGATCTACATGGAGCA CTTACGGGCCGTCCTGAAGAATGTACTACGGGTCGTTGGTGGGGGCTTCC AAAGTTGAGGATTCCCAATAATGTGTTTGAGCTGAACGCACAAGGCATGA TAAGTATTGTTACGTTACCTCTTCAGACTTTCTTTGTGAATTGTCCGTGG AAAGGTGTATGTCTCAATAAAGATATGGTGCAAAAGAATTTCAAGCCGTT GGTTGAAAATGAATTATGCTTAACATGGAATCCAGATGGCGAATTTTACA ACCTGAAGAATCGCCTTGAATTGAATGTGAAGATTAATCATAACGATTAC CGAGGGAAAGGAAAAGGATTTGTAGCTTATGTGCACCACCACACTGAATC ACCGATCTCATCCGAACGGAAAATTCCTCTCTCAGATACGCTGAATACTG AAATCTCCTTTAAGAAGATCGTGAAGGTCAGAAAGAAACGAGGCAATCCG CAATCATGCGAAGATAACTATTATAATAACAGTAAAAATATATTCCCTGG TCGATACACTGTTGAAGCGTGCCTTGATTCTTACACTTGTATTCAATCAC TGATGCTGTGCGGAGATTCAATGGACTTTTGTAAAGATTATCTACCGACG CAGCTCCTTGAGAAATATTGGATGAATACAACATACGAAGAGGTCTATAG CTGCATGAGGAAAAGCTACAATGAAGGCTTATTTTATGCTGACGGTGCAG TTTGTTTGCCGCCTTGTCAAGAGACGCAATATCAGGTCTCATCGACAGTT AGTGCACCAGGAACAAGTCTGGTGACTTTGATGTATCCTGAACGAAATAT TTACGAATACCAAGAAGAAAAGGAGGTTTACACATGGGAGGATTTCATTG CAGGCATTGGTGGTATGGTTGGGTTGTTCTGTGGTTTTTCTATTCTCTCT ATTGCTGAACTGTTCGTATATATTGGTTTGAAATGTGTTTTCAAATGCAG GGGTACTGCAAACCAAGGGACTGATGGTAATGTTGAGGCTGGTGATACTA TCAAAGGAAGACAATCAGCTATGAAGAATGAACTTGGAAGTAATAAGGGA CATACAAATCCTGTTTTCAGTTAATTGAACTGTAATTCAAAACCTACGTA CACTTAATGTACTCACACGAAAGCACTAGTCGCCGTACATAAGTGAATAC ACCGGCAGATTTTTCTAAATAATTATGACTATCAAAGCACCCATATACGC GCGTTCTTCcttaaatcttttaaaaatctttataattg

Coding sequence (CDS) from alignment at scaffold_82:513727..516814+

>TCONS_00072711 ID=TCONS_00072711|Name=TCONS_00072711|organism=Clytia hemisphaerica|type=CDS|length=2952bp|location=Sequence derived from alignment at scaffold_82:513727..516814+ (Clytia hemisphaerica)
ATGAGCACAAGGAAAAGCACAAGAAAAAGCaccaaaaaacaaaacacagg
AAATGAAGAGAATGATGAAGTCGACGATGTGATTGAGAAAAAACTATGGA
TTCACGAGAAATCGAAAGAATATTCGTCCTCGTTATCCATCCACGGTTTA
TCAAGAACCATCCACACAGATTCTCATCTTGAACGTATCTTCTGGATGAT
ATCCTTGATGTTGGCTGTTGGTATCGCCTTCTTAATGGTGCAAAGCCTAT
TAATCAAGTTCTGGAATCAAGACGTGTACATTAATACTGAAAGTAGAGTT
ACCAGTAAGAATTATTTTCCGTCGGTCACTTTCTGTTTGGAGGAGATAAC
GGTTAAAGATACTTATTGCGAGTATCCAGCCAATGATGATCTACATGGAG
CACTTACGGGCCGTCCTGAAGAATGTACTACGGGTCGTTGGTGGGGGCTT
CCAAAGTTGAGGATTCCCAATAATGTGTTTGAGCTGAACGCACAAGGCAT
GATAAGTATTGTTACGTTACCTCTTCAGACTTTCTTTGTGAATTGTCCGT
GGAAAGGTGTATGTCTCAATAAAGATATGGTGCAAAAGAATTTCAAGCCG
TTGGTTGAAAATGAATTATGCTTAACATGGAATCCAGATGGCGAATTTTA
CAACCTGAAGAATCGCCTTGAATTGAATGTGAAGATTAATCATAACGATT
ACCGAGGGAAAGGAAAAGGATTTGTAGCTTATGTGCACCACCACACTGAA
TCACCGATCTCATCCGAACGGAAAATTCCTCTCTCAGATACGCTGAATAC
TGAAATCTCCTTTAAGAAGATCGTGAAGGTCAGAAAGAAACGAGGCAATC
CGCAATCATGCGAAGATAACTATTATAATAACAGTAAAAATATATTCCCT
GGTCGATACACTGTTGAAGCGTGCCTTGATTCTTACACTTGTATTCAATC
ACTGATGCTGTGCGGAGATTCAATGGACTTTTGTAAAGATTATCTACCGA
CGCAGCTCCTTGAGAAATATTGGATGAATACAACATACGAAGAGGTCTAT
AGCTGCATGAGGAAAAGCTACAATGAAGGCTTATTTTATGCTGACGGTGC
AGTTTGTTTGCCGCCTTGTCAAGAGACGCAATATCAGGTCTCATCGACAG
TTAGTGCACCAGGAACAAGTCTGGTGACTTTGATGTATCCTGAACGAAAT
ATTTACGAATACCAAGAAGAAAAGGAGGTTTACACATGGGAGGATTTCAT
TGCAGGCATTGGTGGTATGGTTGGGTTGTTCTGTGGTTTTTCTATTCTCT
CTATTGCTGAACTGTTCGTATATATTGGTTTGAAATGTGTTTTCAAATGC
AGGGGTACTGCAAACCAAGGGACTGATGGTAATGTTGAGGCTGGTGATAC
TATCAAAGGAAGACAATCAGCTATGAAGAATGAACTTGGAAGTAATAAGG
GACATACAAATCCTGTTTTCAGTTAAATGAGCACAAGGAAAAGCACAAGA
AAAAGCaccaaaaaacaaaacacaggAAATGAAGAGAATGATGAAGTCGA
CGATGTGATTGAGAAAAAACTATGGATTCACGAGAAATCGAAAGAATATT
CGTCCTCGTTATCCATCCACGGTTTATCAAGAACCATCCACACAGATTCT
CATCTTGAACGTATCTTCTGGATGATATCCTTGATGTTGGCTGTTGGTAT
CGCCTTCTTAATGGTGCAAAGCCTATTAATCAAGTTCTGGAATCAAGACG
TGTACATTAATACTGAAAGTAGAGTTACCAGTAAGAATTATTTTCCGTCG
GTCACTTTCTGTTTGGAGGAGATAACGGTTAAAGATACTTATTGCGAGTA
TCCAGCCAATGATGATCTACATGGAGCACTTACGGGCCGTCCTGAAGAAT
GTACTACGGGTCGTTGGTGGGGGCTTCCAAAGTTGAGGATTCCCAATAAT
GTGTTTGAGCTGAACGCACAAGGCATGATAAGTATTGTTACGTTACCTCT
TCAGACTTTCTTTGTGAATTGTCCGTGGAAAGGTGTATGTCTCAATAAAG
ATATGGTGCAAAAGAATTTCAAGCCGTTGGTTGAAAATGAATTATGCTTA
ACATGGAATCCAGATGGCGAATTTTACAACCTGAAGAATCGCCTTGAATT
GAATGTGAAGATTAATCATAACGATTACCGAGGGAAAGGAAAAGGATTTG
TAGCTTATGTGCACCACCACACTGAATCACCGATCTCATCCGAACGGAAA
ATTCCTCTCTCAGATACGCTGAATACTGAAATCTCCTTTAAGAAGATCGT
GAAGGTCAGAAAGAAACGAGGCAATCCGCAATCATGCGAAGATAACTATT
ATAATAACAGTAAAAATATATTCCCTGGTCGATACACTGTTGAAGCGTGC
CTTGATTCTTACACTTGTATTCAATCACTGATGCTGTGCGGAGATTCAAT
GGACTTTTGTAAAGATTATCTACCGACGCAGCTCCTTGAGAAATATTGGA
TGAATACAACATACGAAGAGGTCTATAGCTGCATGAGGAAAAGCTACAAT
GAAGGCTTATTTTATGCTGACGGTGCAGTTTGTTTGCCGCCTTGTCAAGA
GACGCAATATCAGGTCTCATCGACAGTTAGTGCACCAGGAACAAGTCTGG
TGACTTTGATGTATCCTGAACGAAATATTTACGAATACCAAGAAGAAAAG
GAGGTTTACACATGGGAGGATTTCATTGCAGGCATTGGTGGTATGGTTGG
GTTGTTCTGTGGTTTTTCTATTCTCTCTATTGCTGAACTGTTCGTATATA
TTGGTTTGAAATGTGTTTTCAAATGCAGGGGTACTGCAAACCAAGGGACT
GATGGTAATGTTGAGGCTGGTGATACTATCAAAGGAAGACAATCAGCTAT
GAAGAATGAACTTGGAAGTAATAAGGGACATACAAATCCTGTTTTCAGTT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045132XLOC_045132Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072711-proteinTCONS_00072711-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072711-exon-scaffold_82-1491911889:513727..513823TCONS_00072711-exon-scaffold_82-1491911889:513727..513823Clytia hemisphaericaexon
TCONS_00072711-exon-scaffold_82-1510915933:513727..513823TCONS_00072711-exon-scaffold_82-1510915933:513727..513823Clytia hemisphaericaexon
TCONS_00072711-exon-scaffold_82-1575043694:513727..513823TCONS_00072711-exon-scaffold_82-1575043694:513727..513823Clytia hemisphaericaexon
TCONS_00072711-exon-scaffold_82-1491911889:515260..516814TCONS_00072711-exon-scaffold_82-1491911889:515260..516814Clytia hemisphaericaexon
TCONS_00072711-exon-scaffold_82-1510915933:515260..516814TCONS_00072711-exon-scaffold_82-1510915933:515260..516814Clytia hemisphaericaexon
TCONS_00072711-exon-scaffold_82-1575043694:515260..516814TCONS_00072711-exon-scaffold_82-1575043694:515260..516814Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_82supercontigscaffold_82:513727..516814 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0245861 0.0239753 0.0556753 0.0272348 0 0 0 0 0 0 0 0 1.37352 1.24811 0 0 0 0 4.50839 5.20998 0.0475425 0.0347843 0.014095 0.0384431 0.0923895 0.0235587 0 0 0 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001873ENaC
Vocabulary: Biological Process
TermDefinition
GO:0006814sodium ion transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005272sodium channel activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006814 sodium ion transport
cellular_component GO:0016020 membrane
molecular_function GO:0005272 sodium channel activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072711 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top