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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072711 ID=TCONS_00072711|Name=TCONS_00072711|organism=Clytia hemisphaerica|type=transcript|length=1652bp
TAAAAAGCAAATATGAGCACAAGGAAAAGCACAAGAAAAAGCaccaaaaa
acaaaacacaggAAATGAAGAGAATGATGAAGTCGACGATGTGATTGAGA
AAAAACTATGGATTCACGAGAAATCGAAAGAATATTCGTCCTCGTTATCC
ATCCACGGTTTATCAAGAACCATCCACACAGATTCTCATCTTGAACGTAT
CTTCTGGATGATATCCTTGATGTTGGCTGTTGGTATCGCCTTCTTAATGG
TGCAAAGCCTATTAATCAAGTTCTGGAATCAAGACGTGTACATTAATACT
GAAAGTAGAGTTACCAGTAAGAATTATTTTCCGTCGGTCACTTTCTGTTT
GGAGGAGATAACGGTTAAAGATACTTATTGCGAGTATCCAGCCAATGATG
ATCTACATGGAGCACTTACGGGCCGTCCTGAAGAATGTACTACGGGTCGT
TGGTGGGGGCTTCCAAAGTTGAGGATTCCCAATAATGTGTTTGAGCTGAA
CGCACAAGGCATGATAAGTATTGTTACGTTACCTCTTCAGACTTTCTTTG
TGAATTGTCCGTGGAAAGGTGTATGTCTCAATAAAGATATGGTGCAAAAG
AATTTCAAGCCGTTGGTTGAAAATGAATTATGCTTAACATGGAATCCAGA
TGGCGAATTTTACAACCTGAAGAATCGCCTTGAATTGAATGTGAAGATTA
ATCATAACGATTACCGAGGGAAAGGAAAAGGATTTGTAGCTTATGTGCAC
CACCACACTGAATCACCGATCTCATCCGAACGGAAAATTCCTCTCTCAGA
TACGCTGAATACTGAAATCTCCTTTAAGAAGATCGTGAAGGTCAGAAAGA
AACGAGGCAATCCGCAATCATGCGAAGATAACTATTATAATAACAGTAAA
AATATATTCCCTGGTCGATACACTGTTGAAGCGTGCCTTGATTCTTACAC
TTGTATTCAATCACTGATGCTGTGCGGAGATTCAATGGACTTTTGTAAAG
ATTATCTACCGACGCAGCTCCTTGAGAAATATTGGATGAATACAACATAC
GAAGAGGTCTATAGCTGCATGAGGAAAAGCTACAATGAAGGCTTATTTTA
TGCTGACGGTGCAGTTTGTTTGCCGCCTTGTCAAGAGACGCAATATCAGG
TCTCATCGACAGTTAGTGCACCAGGAACAAGTCTGGTGACTTTGATGTAT
CCTGAACGAAATATTTACGAATACCAAGAAGAAAAGGAGGTTTACACATG
GGAGGATTTCATTGCAGGCATTGGTGGTATGGTTGGGTTGTTCTGTGGTT
TTTCTATTCTCTCTATTGCTGAACTGTTCGTATATATTGGTTTGAAATGT
GTTTTCAAATGCAGGGGTACTGCAAACCAAGGGACTGATGGTAATGTTGA
GGCTGGTGATACTATCAAAGGAAGACAATCAGCTATGAAGAATGAACTTG
GAAGTAATAAGGGACATACAAATCCTGTTTTCAGTTAATTGAACTGTAAT
TCAAAACCTACGTACACTTAATGTACTCACACGAAAGCACTAGTCGCCGT
ACATAAGTGAATACACCGGCAGATTTTTCTAAATAATTATGACTATCAAA
GCACCCATATACGCGCGTTCTTCcttaaatcttttaaaaatctttataat
tg Run BLAST on NCBI protein sequence of TCONS_00072711-protein >TCONS_00072711-protein ID=TCONS_00072711-protein|Name=TCONS_00072711-protein|organism=Clytia hemisphaerica|type=polypeptide|length=491bp
MSTRKSTRKSTKKQNTGNEENDEVDDVIEKKLWIHEKSKEYSSSLSIHGL
SRTIHTDSHLERIFWMISLMLAVGIAFLMVQSLLIKFWNQDVYINTESRV
TSKNYFPSVTFCLEEITVKDTYCEYPANDDLHGALTGRPEECTTGRWWGL
PKLRIPNNVFELNAQGMISIVTLPLQTFFVNCPWKGVCLNKDMVQKNFKP
LVENELCLTWNPDGEFYNLKNRLELNVKINHNDYRGKGKGFVAYVHHHTE
SPISSERKIPLSDTLNTEISFKKIVKVRKKRGNPQSCEDNYYNNSKNIFP
GRYTVEACLDSYTCIQSLMLCGDSMDFCKDYLPTQLLEKYWMNTTYEEVY
SCMRKSYNEGLFYADGAVCLPPCQETQYQVSSTVSAPGTSLVTLMYPERN
IYEYQEEKEVYTWEDFIAGIGGMVGLFCGFSILSIAELFVYIGLKCVFKC
RGTANQGTDGNVEAGDTIKGRQSAMKNELGSNKGHTNPVFS Run BLAST on NCBI transcript from alignment at scaffold_82:513727..516814+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072711 ID=TCONS_00072711|Name=TCONS_00072711|organism=Clytia hemisphaerica|type=transcript|length=3088bp|location=Sequence derived from alignment at scaffold_82:513727..516814+ (Clytia hemisphaerica)
TAAAAAGCAAATATGAGCACAAGGAAAAGCACAAGAAAAAGCaccaaaaa
acaaaacacaggAAATGAAGAGAATGATGAAGTCGACGATGTGATTGGTG
AGTGAAGTTTCAACTTAATATCATTATAAACACttagattttaaattttc
tgacACGAGCTAGTTTTGTAGGACAATACATAATCCTACATAACTGAAAG
CAAAAAAAACTGTCTGTAAACAGTTAAAATGTTATCACAGATTGGGAAAG
CCGACACATTTTATCGAGGTGTTGTTGCCTGAGTTTGCTTGAAGAATTTC
GGTAATCACCCTTTATTAGCCAATGTccgtgaattaaaaaaaacactgaG
ATTGTTATTCATTTTATATTCCTTACTTTTTCCCAGAGAAAAAACTATGG
ATTCACGAGAAATCGAAAGAATATTCGTCCTCGTTATCCATCCACGGTTT
ATCAAGAACCATCCACACAGATTCTCATCTTGAACGTATCTTCTGGATGA
TATCCTTGATGTTGGCTGTTGGTATCGCCTTCTTAATGGTGCAAAGCCTA
TTAATCAAGTTCTGGAATCAAGACGTGTACATTAATACTGAAAGTAGAGT
TACCAGTAAGAATTATTTTCCGTCGGTCACTTTCTGTTTGGAGGAGATAA
CGGTTAAAGATACTTATTGCGAGTATCCAGCCAATGATGATCTACATGGA
GCACTTACGGGCCGTCCTGAAGAATGTACTACGGGTCGTTGGTGGGGGCT
TCCAAAGTTGAGGATTCCCAATAATGTGTTTGAGCTGAACGCACAAGGCA
TGATAAGTATTGTTACGTTACCTCTTCAGACTTTCTTTGTGAATTGTCCG
NGTTTCAAAAGTTCGGATAAATTTGATTAATTAGAATTCTATGTATAGAA
GAAATAAATTTCGAAGATGGAAATGTTTCCTATTCAAGAAAGACCAGTAA
GCTTCACAAGGAGGAGACATATTAGCAGGGGGTTGCAACACACCAAAATC
AAACCTTTGCTTTGAATATTCAAACTGAAGGAGCTTGTAGAATACAGATT
CACGCTACTACGACATCTAGCTGGTAAAACCTATGAACAGAACTACAGCT
CGTTTCGATTATCTGAATCCCGCTATTTCATCATCAGTAATCGTCAGTAA
AAAGCAAATATGAGCACAAGGAAAAGCACAAGAAAAAGCaccaaaaaaca
aaacacaggAAATGAAGAGAATGATGAAGTCGACGATGTGATTGGTGAGT
GAAGTTTCAACTTAATATCATTATAAACACttagattttaaattttctga
cACGAGCTAGTTTTGTAGGACAATACATAATCCTACATAACTGAAAGCAA
AAAAAACTGTCTGTAAACAGTTAAAATGTTATCACAGATTGGGAAAGCCG
ACACATTTTATCGAGGTGTTGTTGCCTGAGTTTGCTTGAAGAATTTCGGT
AATCACCCTTTATTAGCCAATGTccgtgaattaaaaaaaacactgaGATT
GTTATTCATTTTATATTCCTTACTTTTTCCCAGAGAAAAAACTATGGATT
CACGAGAAATCGAAAGAATATTCGTCCTCGTTATCCATCCACGGTTTATC
AAGAACCATCCACACAGATTCTCATCTTGAACGTATCTTCTGGATGATAT
CCTTGATGTTGGCTGTTGGTATCGCCTTCTTAATGGTGCAAAGCCTATTA
ATCAAGTTCTGGAATCAAGACGTGTACATTAATACTGAAAGTAGAGTTAC
CAGTAAGAATTATTTTCCGTCGGTCACTTTCTGTTTGGAGGAGATAACGG
TTAAAGATACTTATTGCGAGTATCCAGCCAATGATGATCTACATGGAGCA
CTTACGGGCCGTCCTGAAGAATGTACTACGGGTCGTTGGTGGGGGCTTCC
AAAGTTGAGGATTCCCAATAATGTGTTTGAGCTGAACGCACAAGGCATGA
TAAGTATTGTTACGTTACCTCTTCAGACTTTCTTTGTGAATTGTCCGTGG
AAAGGTGTATGTCTCAATAAAGATATGGTGCAAAAGAATTTCAAGCCGTT
GGTTGAAAATGAATTATGCTTAACATGGAATCCAGATGGCGAATTTTACA
ACCTGAAGAATCGCCTTGAATTGAATGTGAAGATTAATCATAACGATTAC
CGAGGGAAAGGAAAAGGATTTGTAGCTTATGTGCACCACCACACTGAATC
ACCGATCTCATCCGAACGGAAAATTCCTCTCTCAGATACGCTGAATACTG
AAATCTCCTTTAAGAAGATCGTGAAGGTCAGAAAGAAACGAGGCAATCCG
CAATCATGCGAAGATAACTATTATAATAACAGTAAAAATATATTCCCTGG
TCGATACACTGTTGAAGCGTGCCTTGATTCTTACACTTGTATTCAATCAC
TGATGCTGTGCGGAGATTCAATGGACTTTTGTAAAGATTATCTACCGACG
CAGCTCCTTGAGAAATATTGGATGAATACAACATACGAAGAGGTCTATAG
CTGCATGAGGAAAAGCTACAATGAAGGCTTATTTTATGCTGACGGTGCAG
TTTGTTTGCCGCCTTGTCAAGAGACGCAATATCAGGTCTCATCGACAGTT
AGTGCACCAGGAACAAGTCTGGTGACTTTGATGTATCCTGAACGAAATAT
TTACGAATACCAAGAAGAAAAGGAGGTTTACACATGGGAGGATTTCATTG
CAGGCATTGGTGGTATGGTTGGGTTGTTCTGTGGTTTTTCTATTCTCTCT
ATTGCTGAACTGTTCGTATATATTGGTTTGAAATGTGTTTTCAAATGCAG
GGGTACTGCAAACCAAGGGACTGATGGTAATGTTGAGGCTGGTGATACTA
TCAAAGGAAGACAATCAGCTATGAAGAATGAACTTGGAAGTAATAAGGGA
CATACAAATCCTGTTTTCAGTTAATTGAACTGTAATTCAAAACCTACGTA
CACTTAATGTACTCACACGAAAGCACTAGTCGCCGTACATAAGTGAATAC
ACCGGCAGATTTTTCTAAATAATTATGACTATCAAAGCACCCATATACGC
GCGTTCTTCcttaaatcttttaaaaatctttataattg Coding sequence (CDS) from alignment at scaffold_82:513727..516814+ >TCONS_00072711 ID=TCONS_00072711|Name=TCONS_00072711|organism=Clytia hemisphaerica|type=CDS|length=2952bp|location=Sequence derived from alignment at scaffold_82:513727..516814+ (Clytia hemisphaerica)
ATGAGCACAAGGAAAAGCACAAGAAAAAGCaccaaaaaacaaaacacagg
AAATGAAGAGAATGATGAAGTCGACGATGTGATTGAGAAAAAACTATGGA
TTCACGAGAAATCGAAAGAATATTCGTCCTCGTTATCCATCCACGGTTTA
TCAAGAACCATCCACACAGATTCTCATCTTGAACGTATCTTCTGGATGAT
ATCCTTGATGTTGGCTGTTGGTATCGCCTTCTTAATGGTGCAAAGCCTAT
TAATCAAGTTCTGGAATCAAGACGTGTACATTAATACTGAAAGTAGAGTT
ACCAGTAAGAATTATTTTCCGTCGGTCACTTTCTGTTTGGAGGAGATAAC
GGTTAAAGATACTTATTGCGAGTATCCAGCCAATGATGATCTACATGGAG
CACTTACGGGCCGTCCTGAAGAATGTACTACGGGTCGTTGGTGGGGGCTT
CCAAAGTTGAGGATTCCCAATAATGTGTTTGAGCTGAACGCACAAGGCAT
GATAAGTATTGTTACGTTACCTCTTCAGACTTTCTTTGTGAATTGTCCGT
GGAAAGGTGTATGTCTCAATAAAGATATGGTGCAAAAGAATTTCAAGCCG
TTGGTTGAAAATGAATTATGCTTAACATGGAATCCAGATGGCGAATTTTA
CAACCTGAAGAATCGCCTTGAATTGAATGTGAAGATTAATCATAACGATT
ACCGAGGGAAAGGAAAAGGATTTGTAGCTTATGTGCACCACCACACTGAA
TCACCGATCTCATCCGAACGGAAAATTCCTCTCTCAGATACGCTGAATAC
TGAAATCTCCTTTAAGAAGATCGTGAAGGTCAGAAAGAAACGAGGCAATC
CGCAATCATGCGAAGATAACTATTATAATAACAGTAAAAATATATTCCCT
GGTCGATACACTGTTGAAGCGTGCCTTGATTCTTACACTTGTATTCAATC
ACTGATGCTGTGCGGAGATTCAATGGACTTTTGTAAAGATTATCTACCGA
CGCAGCTCCTTGAGAAATATTGGATGAATACAACATACGAAGAGGTCTAT
AGCTGCATGAGGAAAAGCTACAATGAAGGCTTATTTTATGCTGACGGTGC
AGTTTGTTTGCCGCCTTGTCAAGAGACGCAATATCAGGTCTCATCGACAG
TTAGTGCACCAGGAACAAGTCTGGTGACTTTGATGTATCCTGAACGAAAT
ATTTACGAATACCAAGAAGAAAAGGAGGTTTACACATGGGAGGATTTCAT
TGCAGGCATTGGTGGTATGGTTGGGTTGTTCTGTGGTTTTTCTATTCTCT
CTATTGCTGAACTGTTCGTATATATTGGTTTGAAATGTGTTTTCAAATGC
AGGGGTACTGCAAACCAAGGGACTGATGGTAATGTTGAGGCTGGTGATAC
TATCAAAGGAAGACAATCAGCTATGAAGAATGAACTTGGAAGTAATAAGG
GACATACAAATCCTGTTTTCAGTTAAATGAGCACAAGGAAAAGCACAAGA
AAAAGCaccaaaaaacaaaacacaggAAATGAAGAGAATGATGAAGTCGA
CGATGTGATTGAGAAAAAACTATGGATTCACGAGAAATCGAAAGAATATT
CGTCCTCGTTATCCATCCACGGTTTATCAAGAACCATCCACACAGATTCT
CATCTTGAACGTATCTTCTGGATGATATCCTTGATGTTGGCTGTTGGTAT
CGCCTTCTTAATGGTGCAAAGCCTATTAATCAAGTTCTGGAATCAAGACG
TGTACATTAATACTGAAAGTAGAGTTACCAGTAAGAATTATTTTCCGTCG
GTCACTTTCTGTTTGGAGGAGATAACGGTTAAAGATACTTATTGCGAGTA
TCCAGCCAATGATGATCTACATGGAGCACTTACGGGCCGTCCTGAAGAAT
GTACTACGGGTCGTTGGTGGGGGCTTCCAAAGTTGAGGATTCCCAATAAT
GTGTTTGAGCTGAACGCACAAGGCATGATAAGTATTGTTACGTTACCTCT
TCAGACTTTCTTTGTGAATTGTCCGTGGAAAGGTGTATGTCTCAATAAAG
ATATGGTGCAAAAGAATTTCAAGCCGTTGGTTGAAAATGAATTATGCTTA
ACATGGAATCCAGATGGCGAATTTTACAACCTGAAGAATCGCCTTGAATT
GAATGTGAAGATTAATCATAACGATTACCGAGGGAAAGGAAAAGGATTTG
TAGCTTATGTGCACCACCACACTGAATCACCGATCTCATCCGAACGGAAA
ATTCCTCTCTCAGATACGCTGAATACTGAAATCTCCTTTAAGAAGATCGT
GAAGGTCAGAAAGAAACGAGGCAATCCGCAATCATGCGAAGATAACTATT
ATAATAACAGTAAAAATATATTCCCTGGTCGATACACTGTTGAAGCGTGC
CTTGATTCTTACACTTGTATTCAATCACTGATGCTGTGCGGAGATTCAAT
GGACTTTTGTAAAGATTATCTACCGACGCAGCTCCTTGAGAAATATTGGA
TGAATACAACATACGAAGAGGTCTATAGCTGCATGAGGAAAAGCTACAAT
GAAGGCTTATTTTATGCTGACGGTGCAGTTTGTTTGCCGCCTTGTCAAGA
GACGCAATATCAGGTCTCATCGACAGTTAGTGCACCAGGAACAAGTCTGG
TGACTTTGATGTATCCTGAACGAAATATTTACGAATACCAAGAAGAAAAG
GAGGTTTACACATGGGAGGATTTCATTGCAGGCATTGGTGGTATGGTTGG
GTTGTTCTGTGGTTTTTCTATTCTCTCTATTGCTGAACTGTTCGTATATA
TTGGTTTGAAATGTGTTTTCAAATGCAGGGGTACTGCAAACCAAGGGACT
GATGGTAATGTTGAGGCTGGTGATACTATCAAAGGAAGACAATCAGCTAT
GAAGAATGAACTTGGAAGTAATAAGGGACATACAAATCCTGTTTTCAGTT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072711-exon-scaffold_82-1491911889:513727..513823 | TCONS_00072711-exon-scaffold_82-1491911889:513727..513823 | Clytia hemisphaerica | exon |
| TCONS_00072711-exon-scaffold_82-1510915933:513727..513823 | TCONS_00072711-exon-scaffold_82-1510915933:513727..513823 | Clytia hemisphaerica | exon |
| TCONS_00072711-exon-scaffold_82-1575043694:513727..513823 | TCONS_00072711-exon-scaffold_82-1575043694:513727..513823 | Clytia hemisphaerica | exon |
| TCONS_00072711-exon-scaffold_82-1491911889:515260..516814 | TCONS_00072711-exon-scaffold_82-1491911889:515260..516814 | Clytia hemisphaerica | exon |
| TCONS_00072711-exon-scaffold_82-1510915933:515260..516814 | TCONS_00072711-exon-scaffold_82-1510915933:515260..516814 | Clytia hemisphaerica | exon |
| TCONS_00072711-exon-scaffold_82-1575043694:515260..516814 | TCONS_00072711-exon-scaffold_82-1575043694:515260..516814 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_82 | supercontig | scaffold_82:513727..516814 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001873 | ENaC |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006814 | sodium ion transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005272 | sodium channel activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006814 |
sodium ion transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005272 |
sodium channel activity |
Blast
The following BLAST results are available for this feature:
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