TCONS_00072707 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072707
Unique NameTCONS_00072707
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length832

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072707 ID=TCONS_00072707|Name=TCONS_00072707|organism=Clytia hemisphaerica|type=transcript|length=832bp
GCCATTTTGTCTTGCATACGGATGCAGTAATGCATCAGGTagaaatgtaa
aaaataaaggTTTCTTCAAGATTCCTGATCCAAAGAGATATCACGAACAA
TGTGCACGTTGGCTACATAACATGGGGAATTCAAAGTATAATGCTAAAAA
TTTCGAAGCTAAAGTACATCATGTTGTATGCAGTgaccattttcaccctg
attgTTTCAAGAGAGATCTAAAGAGAGAACTTTGCCCTGATTACAAGGAT
ACAAGAGCAAAAAGAGAACTCGTAGACGGAGCAATACCGACTATATTCAA
ACACCGCACTTACGATCAGATTAACATGGATGGTACAAAAATCATGTCAA
GACCGCCCAGTAAAAGAACTTTAAAAATGGAGAGAGCTAATGTTGTCAAG
AAGCTGCTTTTGCAAAATGAACCTCCTAAACCTGGCGGGGATACCCAACC
GATCGACGATACAGGTGTATCAACCACCATCAAAAATAGTATACCGATAA
AAAATGAACCAAGTACTGAACGAAAAACTGTAGAAAAGNGTGTATCAACC
ACCATCAAAAATAGTATCCCGATAAAAAATGAACCAAGTACTGAACGAAA
AACTGTAGAAAAGGAAGTCGTAACCACCCAAATTGCAACCCAAACATATG
TTTTGAAAAGGAAAGAGAAGGGAGAAAATTTAAACCAGAAAGCTTATGAA
CTTGCCGAAAGACTAGTTGGTTCCAAAAACATTTCTTTGGCTGATTATCG
ATTATCAGCTAATGCCCTTTTAAAACCAGTGTAGTGACCACCAATGGGTT
CTGGAAAGGTGTCTTTTATCTTCTTAACAGCG
Run BLAST on NCBI

protein sequence of TCONS_00072707-protein

>TCONS_00072707-protein ID=TCONS_00072707-protein|Name=TCONS_00072707-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
PFCLAYGCSNASGRNVKNKGFFKIPDPKRYHEQCARWLHNMGNSKYNAKN
FEAKVHHVVCSDHFHPDCFKRDLKRELCPDYKDTRAKRELVDGAIPTIFK
HRTYDQINMDGTKIMSRPPSKRTLKMERANVVKKLLLQNEPPKPGGDTQP
IDDTGVSTTIKNSIPIKNEPSTERKTVEKXVSTTIKNSIPIKNEPSTERK
TVEKEVVTTQIATQTYVLKRKEKGENLNQKAYELAERLVGSKNISLADYR
LSANALLKPV
Run BLAST on NCBI

transcript from alignment at scaffold_82:478424..479504+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072707 ID=TCONS_00072707|Name=TCONS_00072707|organism=Clytia hemisphaerica|type=transcript|length=1081bp|location=Sequence derived from alignment at scaffold_82:478424..479504+ (Clytia hemisphaerica)
GCCATTTTGTCTTGCATACGGATGCAGTAATGCATCAGGTagaaatgtaa aaaataaaggTTTCTTCAAGATTCCTGATCCAAAGAGATATCACGAACAA TGTGCACGTTGGCTACATAACATGGGGAATTCAAAGTATAATGCTAAAAA TTTCGAAGCTAAAGTACATCATGTTGTATGCAGTgaccattttcaccctg attgTTTCAAGAGAGATCTAAAGAGAGAACTTTGCCCTGATTACAAGGAT ACAAGAGCAAAAAGAGAACTCGTAGACGGAGCAATACCGACTATATTCAA ACACCGCACTTACGATCAGATTAACATGGATGGTACAAAAATCATGTCAA GACCGCCCAGTAAAAGAACTTTAAAAATGGAGAGAGCTAATGTAAGACAT TCATAAATCcctaaatttagtttttaaggAGGATAACAAAACTTCTAGCT AGTGATATTTGTTCACTAAATAGCACAAACTCTTTAACTTCGAATCCTCT TCGTGTCCAATAAACTATAATTTCAATTTAAGATATAGTCTTTTAAACGA TTTTTTAAGGTTGTCAAGAAGCTGCTTTTGCAAAATGAACCTCCTAAACC TGGCGGGGATACCCAACCGATCGACGATACAGATGAAACAAGTGGAACCA TTGTTAATGAAAACGATTCCTCTGAGATTTTGGATGAAAACACAGGAATA AATATCGATATACGTGTATCAACCACCATCAAAAATAGTATACCGATAAA AAATGAACCAAGTACTGAACGAAAAACTGTAGAAAAGNGTGTATCAACCA CCATCAAAAATAGTATCCCGATAAAAAATGAACCAAGTACTGAACGAAAA ACTGTAGAAAAGGAAGTCGTAACCACCCAAATTGCAACCCAAACATATGT TTTGAAAAGGAAAGAGAAGGGAGAAAATTTAAACCAGAAAGCTTATGAAC TTGCCGAAAGACTAGTTGGTTCCAAAAACATTTCTTTGGCTGATTATCGA TTATCAGCTAATGCCCTTTTAAAACCAGTGTAGTGACCACCAATGGGTTC TGGAAAGGTGTCTTTTATCTTCTTAACAGCG

Coding sequence (CDS) from alignment at scaffold_82:478424..479504+

>TCONS_00072707 ID=TCONS_00072707|Name=TCONS_00072707|organism=Clytia hemisphaerica|type=CDS|length=2349bp|location=Sequence derived from alignment at scaffold_82:478424..479504+ (Clytia hemisphaerica)
CCATTTTGTCTTGCATACGGATGCAGTAATGCATCAGGTagaaatgtaaa
aaataaaggTTTCTTCAAGATTCCTGATCCAAAGAGATATCACGAACAAT
GTGCACGTTGGCTACATAACATGGGGAATTCAAAGTATAATGCTAAAAAT
TTCGAAGCTAAAGTACATCATGTTGTATGCAGTgaccattttcaccctga
ttgTTTCAAGAGAGATCTAAAGAGAGAACTTTGCCCTGATTACAAGGATA
CAAGAGCAAAAAGAGAACTCGTAGACGGAGCAATACCGACTATATTCAAA
CACCGCACTTACGATCAGATTAACATGGATGGTACAAAAATCATGTCAAG
ACCGCCCAGTAAAAGAACTTTAAAAATGGAGAGAGCTAATGTTGTCAAGA
AGCTGCTTTTGCAAAATGAACCTCCTAAACCTGGCGGGGATACCCAACCG
ATCGACGATACAGGTGTATCAACCACCATCAAAAATAGTATACCGATAAA
AAATGAACCAAGTACTGAACGAAAAACTGTAGAAAAGNGTGTATCAACCA
CCATCAAAAATAGTATCCCGATAAAAAATGAACCAAGTACTGAACGAAAA
ACTGTAGAAAAGGAAGTCGTAACCACCCAAATTGCAACCCAAACATATGT
TTTGAAAAGGAAAGAGAAGGGAGAAAATTTAAACCAGAAAGCTTATGAAC
TTGCCGAAAGACTAGTTGGTTCCAAAAACATTTCTTTGGCTGATTATCGA
TTATCAGCTAATGCCCTTTTAAAACCAGTGTAGCCATTTTGTCTTGCATA
CGGATGCAGTAATGCATCAGGTagaaatgtaaaaaataaaggTTTCTTCA
AGATTCCTGATCCAAAGAGATATCACGAACAATGTGCACGTTGGCTACAT
AACATGGGGAATTCAAAGTATAATGCTAAAAATTTCGAAGCTAAAGTACA
TCATGTTGTATGCAGTgaccattttcaccctgattgTTTCAAGAGAGATC
TAAAGAGAGAACTTTGCCCTGATTACAAGGATACAAGAGCAAAAAGAGAA
CTCGTAGACGGAGCAATACCGACTATATTCAAACACCGCACTTACGATCA
GATTAACATGGATGGTACAAAAATCATGTCAAGACCGCCCAGTAAAAGAA
CTTTAAAAATGGAGAGAGCTAATGTTGTCAAGAAGCTGCTTTTGCAAAAT
GAACCTCCTAAACCTGGCGGGGATACCCAACCGATCGACGATACAGGTGT
ATCAACCACCATCAAAAATAGTATACCGATAAAAAATGAACCAAGTACTG
AACGAAAAACTGTAGAAAAGNGTGTATCAACCACCATCAAAAATAGTATC
CCGATAAAAAATGAACCAAGTACTGAACGAAAAACTGTAGAAAAGGAAGT
CGTAACCACCCAAATTGCAACCCAAACATATGTTTTGAAAAGGAAAGAGA
AGGGAGAAAATTTAAACCAGAAAGCTTATGAACTTGCCGAAAGACTAGTT
GGTTCCAAAAACATTTCTTTGGCTGATTATCGATTATCAGCTAATGCCCT
TTTAAAACCAGTGTAGCCATTTTGTCTTGCATACGGATGCAGTAATGCAT
CAGGTagaaatgtaaaaaataaaggTTTCTTCAAGATTCCTGATCCAAAG
AGATATCACGAACAATGTGCACGTTGGCTACATAACATGGGGAATTCAAA
GTATAATGCTAAAAATTTCGAAGCTAAAGTACATCATGTTGTATGCAGTg
accattttcaccctgattgTTTCAAGAGAGATCTAAAGAGAGAACTTTGC
CCTGATTACAAGGATACAAGAGCAAAAAGAGAACTCGTAGACGGAGCAAT
ACCGACTATATTCAAACACCGCACTTACGATCAGATTAACATGGATGGTA
CAAAAATCATGTCAAGACCGCCCAGTAAAAGAACTTTAAAAATGGAGAGA
GCTAATGTTGTCAAGAAGCTGCTTTTGCAAAATGAACCTCCTAAACCTGG
CGGGGATACCCAACCGATCGACGATACAGGTGTATCAACCACCATCAAAA
ATAGTATACCGATAAAAAATGAACCAAGTACTGAACGAAAAACTGTAGAA
AAGNGTGTATCAACCACCATCAAAAATAGTATCCCGATAAAAAATGAACC
AAGTACTGAACGAAAAACTGTAGAAAAGGAAGTCGTAACCACCCAAATTG
CAACCCAAACATATGTTTTGAAAAGGAAAGAGAAGGGAGAAAATTTAAAC
CAGAAAGCTTATGAACTTGCCGAAAGACTAGTTGGTTCCAAAAACATTTC
TTTGGCTGATTATCGATTATCAGCTAATGCCCTTTTAAAACCAGTGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045130XLOC_045130Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072707-proteinTCONS_00072707-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072707-exon-scaffold_82-1491911889:478424..478814TCONS_00072707-exon-scaffold_82-1491911889:478424..478814Clytia hemisphaericaexon
TCONS_00072707-exon-scaffold_82-1510915933:478424..478814TCONS_00072707-exon-scaffold_82-1510915933:478424..478814Clytia hemisphaericaexon
TCONS_00072707-exon-scaffold_82-1575043694:478424..478814TCONS_00072707-exon-scaffold_82-1575043694:478424..478814Clytia hemisphaericaexon
TCONS_00072707-exon-scaffold_82-1491911889:478983..479055TCONS_00072707-exon-scaffold_82-1491911889:478983..479055Clytia hemisphaericaexon
TCONS_00072707-exon-scaffold_82-1510915933:478983..479055TCONS_00072707-exon-scaffold_82-1510915933:478983..479055Clytia hemisphaericaexon
TCONS_00072707-exon-scaffold_82-1575043694:478983..479055TCONS_00072707-exon-scaffold_82-1575043694:478983..479055Clytia hemisphaericaexon
TCONS_00072707-exon-scaffold_82-1491911889:479137..479504TCONS_00072707-exon-scaffold_82-1491911889:479137..479504Clytia hemisphaericaexon
TCONS_00072707-exon-scaffold_82-1510915933:479137..479504TCONS_00072707-exon-scaffold_82-1510915933:479137..479504Clytia hemisphaericaexon
TCONS_00072707-exon-scaffold_82-1575043694:479137..479504TCONS_00072707-exon-scaffold_82-1575043694:479137..479504Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_82supercontigscaffold_82:478424..479504 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.113893 0.333192 0.580301 0.82006 1.22873 1.45644 7.32139 7.60815 6.43037 5.94407 8.07724 6.03025 12.271 12.7042 6.33789 6.2463 3.76197 8.41286 26.8778 24.6416 5.3958 4.7535 2.41587 2.13702 6.97008 5.67496 6.48106 6.91677 0.632063 0.901561
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006612Znf_C2CH
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072707 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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