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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072707 ID=TCONS_00072707|Name=TCONS_00072707|organism=Clytia hemisphaerica|type=transcript|length=832bp
GCCATTTTGTCTTGCATACGGATGCAGTAATGCATCAGGTagaaatgtaa
aaaataaaggTTTCTTCAAGATTCCTGATCCAAAGAGATATCACGAACAA
TGTGCACGTTGGCTACATAACATGGGGAATTCAAAGTATAATGCTAAAAA
TTTCGAAGCTAAAGTACATCATGTTGTATGCAGTgaccattttcaccctg
attgTTTCAAGAGAGATCTAAAGAGAGAACTTTGCCCTGATTACAAGGAT
ACAAGAGCAAAAAGAGAACTCGTAGACGGAGCAATACCGACTATATTCAA
ACACCGCACTTACGATCAGATTAACATGGATGGTACAAAAATCATGTCAA
GACCGCCCAGTAAAAGAACTTTAAAAATGGAGAGAGCTAATGTTGTCAAG
AAGCTGCTTTTGCAAAATGAACCTCCTAAACCTGGCGGGGATACCCAACC
GATCGACGATACAGGTGTATCAACCACCATCAAAAATAGTATACCGATAA
AAAATGAACCAAGTACTGAACGAAAAACTGTAGAAAAGNGTGTATCAACC
ACCATCAAAAATAGTATCCCGATAAAAAATGAACCAAGTACTGAACGAAA
AACTGTAGAAAAGGAAGTCGTAACCACCCAAATTGCAACCCAAACATATG
TTTTGAAAAGGAAAGAGAAGGGAGAAAATTTAAACCAGAAAGCTTATGAA
CTTGCCGAAAGACTAGTTGGTTCCAAAAACATTTCTTTGGCTGATTATCG
ATTATCAGCTAATGCCCTTTTAAAACCAGTGTAGTGACCACCAATGGGTT
CTGGAAAGGTGTCTTTTATCTTCTTAACAGCG Run BLAST on NCBI protein sequence of TCONS_00072707-protein >TCONS_00072707-protein ID=TCONS_00072707-protein|Name=TCONS_00072707-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
PFCLAYGCSNASGRNVKNKGFFKIPDPKRYHEQCARWLHNMGNSKYNAKN
FEAKVHHVVCSDHFHPDCFKRDLKRELCPDYKDTRAKRELVDGAIPTIFK
HRTYDQINMDGTKIMSRPPSKRTLKMERANVVKKLLLQNEPPKPGGDTQP
IDDTGVSTTIKNSIPIKNEPSTERKTVEKXVSTTIKNSIPIKNEPSTERK
TVEKEVVTTQIATQTYVLKRKEKGENLNQKAYELAERLVGSKNISLADYR
LSANALLKPV Run BLAST on NCBI transcript from alignment at scaffold_82:478424..479504+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072707 ID=TCONS_00072707|Name=TCONS_00072707|organism=Clytia hemisphaerica|type=transcript|length=1081bp|location=Sequence derived from alignment at scaffold_82:478424..479504+ (Clytia hemisphaerica)
GCCATTTTGTCTTGCATACGGATGCAGTAATGCATCAGGTagaaatgtaa
aaaataaaggTTTCTTCAAGATTCCTGATCCAAAGAGATATCACGAACAA
TGTGCACGTTGGCTACATAACATGGGGAATTCAAAGTATAATGCTAAAAA
TTTCGAAGCTAAAGTACATCATGTTGTATGCAGTgaccattttcaccctg
attgTTTCAAGAGAGATCTAAAGAGAGAACTTTGCCCTGATTACAAGGAT
ACAAGAGCAAAAAGAGAACTCGTAGACGGAGCAATACCGACTATATTCAA
ACACCGCACTTACGATCAGATTAACATGGATGGTACAAAAATCATGTCAA
GACCGCCCAGTAAAAGAACTTTAAAAATGGAGAGAGCTAATGTAAGACAT
TCATAAATCcctaaatttagtttttaaggAGGATAACAAAACTTCTAGCT
AGTGATATTTGTTCACTAAATAGCACAAACTCTTTAACTTCGAATCCTCT
TCGTGTCCAATAAACTATAATTTCAATTTAAGATATAGTCTTTTAAACGA
TTTTTTAAGGTTGTCAAGAAGCTGCTTTTGCAAAATGAACCTCCTAAACC
TGGCGGGGATACCCAACCGATCGACGATACAGATGAAACAAGTGGAACCA
TTGTTAATGAAAACGATTCCTCTGAGATTTTGGATGAAAACACAGGAATA
AATATCGATATACGTGTATCAACCACCATCAAAAATAGTATACCGATAAA
AAATGAACCAAGTACTGAACGAAAAACTGTAGAAAAGNGTGTATCAACCA
CCATCAAAAATAGTATCCCGATAAAAAATGAACCAAGTACTGAACGAAAA
ACTGTAGAAAAGGAAGTCGTAACCACCCAAATTGCAACCCAAACATATGT
TTTGAAAAGGAAAGAGAAGGGAGAAAATTTAAACCAGAAAGCTTATGAAC
TTGCCGAAAGACTAGTTGGTTCCAAAAACATTTCTTTGGCTGATTATCGA
TTATCAGCTAATGCCCTTTTAAAACCAGTGTAGTGACCACCAATGGGTTC
TGGAAAGGTGTCTTTTATCTTCTTAACAGCG Coding sequence (CDS) from alignment at scaffold_82:478424..479504+ >TCONS_00072707 ID=TCONS_00072707|Name=TCONS_00072707|organism=Clytia hemisphaerica|type=CDS|length=2349bp|location=Sequence derived from alignment at scaffold_82:478424..479504+ (Clytia hemisphaerica)
CCATTTTGTCTTGCATACGGATGCAGTAATGCATCAGGTagaaatgtaaa
aaataaaggTTTCTTCAAGATTCCTGATCCAAAGAGATATCACGAACAAT
GTGCACGTTGGCTACATAACATGGGGAATTCAAAGTATAATGCTAAAAAT
TTCGAAGCTAAAGTACATCATGTTGTATGCAGTgaccattttcaccctga
ttgTTTCAAGAGAGATCTAAAGAGAGAACTTTGCCCTGATTACAAGGATA
CAAGAGCAAAAAGAGAACTCGTAGACGGAGCAATACCGACTATATTCAAA
CACCGCACTTACGATCAGATTAACATGGATGGTACAAAAATCATGTCAAG
ACCGCCCAGTAAAAGAACTTTAAAAATGGAGAGAGCTAATGTTGTCAAGA
AGCTGCTTTTGCAAAATGAACCTCCTAAACCTGGCGGGGATACCCAACCG
ATCGACGATACAGGTGTATCAACCACCATCAAAAATAGTATACCGATAAA
AAATGAACCAAGTACTGAACGAAAAACTGTAGAAAAGNGTGTATCAACCA
CCATCAAAAATAGTATCCCGATAAAAAATGAACCAAGTACTGAACGAAAA
ACTGTAGAAAAGGAAGTCGTAACCACCCAAATTGCAACCCAAACATATGT
TTTGAAAAGGAAAGAGAAGGGAGAAAATTTAAACCAGAAAGCTTATGAAC
TTGCCGAAAGACTAGTTGGTTCCAAAAACATTTCTTTGGCTGATTATCGA
TTATCAGCTAATGCCCTTTTAAAACCAGTGTAGCCATTTTGTCTTGCATA
CGGATGCAGTAATGCATCAGGTagaaatgtaaaaaataaaggTTTCTTCA
AGATTCCTGATCCAAAGAGATATCACGAACAATGTGCACGTTGGCTACAT
AACATGGGGAATTCAAAGTATAATGCTAAAAATTTCGAAGCTAAAGTACA
TCATGTTGTATGCAGTgaccattttcaccctgattgTTTCAAGAGAGATC
TAAAGAGAGAACTTTGCCCTGATTACAAGGATACAAGAGCAAAAAGAGAA
CTCGTAGACGGAGCAATACCGACTATATTCAAACACCGCACTTACGATCA
GATTAACATGGATGGTACAAAAATCATGTCAAGACCGCCCAGTAAAAGAA
CTTTAAAAATGGAGAGAGCTAATGTTGTCAAGAAGCTGCTTTTGCAAAAT
GAACCTCCTAAACCTGGCGGGGATACCCAACCGATCGACGATACAGGTGT
ATCAACCACCATCAAAAATAGTATACCGATAAAAAATGAACCAAGTACTG
AACGAAAAACTGTAGAAAAGNGTGTATCAACCACCATCAAAAATAGTATC
CCGATAAAAAATGAACCAAGTACTGAACGAAAAACTGTAGAAAAGGAAGT
CGTAACCACCCAAATTGCAACCCAAACATATGTTTTGAAAAGGAAAGAGA
AGGGAGAAAATTTAAACCAGAAAGCTTATGAACTTGCCGAAAGACTAGTT
GGTTCCAAAAACATTTCTTTGGCTGATTATCGATTATCAGCTAATGCCCT
TTTAAAACCAGTGTAGCCATTTTGTCTTGCATACGGATGCAGTAATGCAT
CAGGTagaaatgtaaaaaataaaggTTTCTTCAAGATTCCTGATCCAAAG
AGATATCACGAACAATGTGCACGTTGGCTACATAACATGGGGAATTCAAA
GTATAATGCTAAAAATTTCGAAGCTAAAGTACATCATGTTGTATGCAGTg
accattttcaccctgattgTTTCAAGAGAGATCTAAAGAGAGAACTTTGC
CCTGATTACAAGGATACAAGAGCAAAAAGAGAACTCGTAGACGGAGCAAT
ACCGACTATATTCAAACACCGCACTTACGATCAGATTAACATGGATGGTA
CAAAAATCATGTCAAGACCGCCCAGTAAAAGAACTTTAAAAATGGAGAGA
GCTAATGTTGTCAAGAAGCTGCTTTTGCAAAATGAACCTCCTAAACCTGG
CGGGGATACCCAACCGATCGACGATACAGGTGTATCAACCACCATCAAAA
ATAGTATACCGATAAAAAATGAACCAAGTACTGAACGAAAAACTGTAGAA
AAGNGTGTATCAACCACCATCAAAAATAGTATCCCGATAAAAAATGAACC
AAGTACTGAACGAAAAACTGTAGAAAAGGAAGTCGTAACCACCCAAATTG
CAACCCAAACATATGTTTTGAAAAGGAAAGAGAAGGGAGAAAATTTAAAC
CAGAAAGCTTATGAACTTGCCGAAAGACTAGTTGGTTCCAAAAACATTTC
TTTGGCTGATTATCGATTATCAGCTAATGCCCTTTTAAAACCAGTGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072707-exon-scaffold_82-1491911889:478424..478814 | TCONS_00072707-exon-scaffold_82-1491911889:478424..478814 | Clytia hemisphaerica | exon |
| TCONS_00072707-exon-scaffold_82-1510915933:478424..478814 | TCONS_00072707-exon-scaffold_82-1510915933:478424..478814 | Clytia hemisphaerica | exon |
| TCONS_00072707-exon-scaffold_82-1575043694:478424..478814 | TCONS_00072707-exon-scaffold_82-1575043694:478424..478814 | Clytia hemisphaerica | exon |
| TCONS_00072707-exon-scaffold_82-1491911889:478983..479055 | TCONS_00072707-exon-scaffold_82-1491911889:478983..479055 | Clytia hemisphaerica | exon |
| TCONS_00072707-exon-scaffold_82-1510915933:478983..479055 | TCONS_00072707-exon-scaffold_82-1510915933:478983..479055 | Clytia hemisphaerica | exon |
| TCONS_00072707-exon-scaffold_82-1575043694:478983..479055 | TCONS_00072707-exon-scaffold_82-1575043694:478983..479055 | Clytia hemisphaerica | exon |
| TCONS_00072707-exon-scaffold_82-1491911889:479137..479504 | TCONS_00072707-exon-scaffold_82-1491911889:479137..479504 | Clytia hemisphaerica | exon |
| TCONS_00072707-exon-scaffold_82-1510915933:479137..479504 | TCONS_00072707-exon-scaffold_82-1510915933:479137..479504 | Clytia hemisphaerica | exon |
| TCONS_00072707-exon-scaffold_82-1575043694:479137..479504 | TCONS_00072707-exon-scaffold_82-1575043694:479137..479504 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_82 | supercontig | scaffold_82:478424..479504 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006612 | Znf_C2CH |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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