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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072690 ID=TCONS_00072690|Name=TCONS_00072690|organism=Clytia hemisphaerica|type=transcript|length=2547bp
AACAAAGAGAATCTCCATTCTTGCTTAGAAAGAATCGTAGTATCATGGca
accaaaaagaaaaacgacTTTAACCACGTGTGGAACTTGTGTTTTGATAT
GAAAGTGTTACATGCTCATCCATTCCCACTAAAAAAATATCTTAAAGATA
TCAGTAATGGAGCAAAAAGAAACGATAAAAACAAGGCAATTCATATCTTC
AGTAACATACACCATATTTGCATTGGTTTTATTGCGTTTATTATTGTTGC
TGAATAACGACAGCTTGATTATAAACATCAGAGGTTTCGATGAACCCAAA
GAAATCCAAATCATACACATCGAGAAGCGTCTAAACGCAATAACCAAGAC
GTATacgaaagaaaaatatgatttgAACACTTTGCAATTTCAAATGCAAA
GTCTTTGCAACCAGGATACGTTGAATGATCCTTGCTTGAAAGTTTTACCC
TGGAAACTTCGTCATAAGCGGAGTGTTAACACTACAAGTGTAGATCAAAG
TATTGTCAAACTTCTTGTGCGTCCTTTAGGATATCCGAGCTTCGTTCAAA
TTATCTCCCTAAACACACTCGGTGAGACGCAAACAACTGGAGGTGATTAT
TGGGATGTCAAACTTTGCGGAGATAAAAACACAACtctaaatattgaaat
gatagACCATGACGACGGCTCTTACACAGGCTTTTTCTACCTACCAGAGG
ATCTGATGATATCAAGTAGtaaatttgaattgaaatatttgctgGAATAC
AGTCAATGTAACGGATTGAGAGACATGCCGGAAAATTGGTTCAAAACAGG
GACGAttcaaggaaaatttcaacGAGATGGTTCAATTGGAGACCATGATG
ATTTTCTCCATCAATTACAAACcacaaaactattgttccataTACCACGT
GATCAAAATGAATTCAACTCATTggtgcaaaattttgaaatttcccaaaA
GAGTCAAAAGCCTTTCAATAAATATTGTGGATTTTGGCATGATGGCTTGT
TCAGGGAATTTCATCAAAAAGATGTTGCTAATACAGAGCCTCGTTTGAAT
GTCCATGcacctccttttcaaacattaaaAATATTTGGAGATTCGATGGG
ACGACACTTCCACGAATCAATAGTTGCAAATCATTCTCTATGTAAAAACT
TGTTCAAGAAATGCGATTTATCTTACACGTGGGTTTACAAAATGTACAAT
CGAACCAAAGACTTCCATGATGGCGTTCATATTTACGACGATAAAGactt
taaccagactcattatCTGGAAGACATTCGTAGAGATTTATACTCCAAAA
ACATGAGACATGACAAAAGTGTTTATTTGGTCAACTTTGGCGTCCATACT
ATTATGACTTTACCACTAAACAAGCTACGTGAACTTTTACAAGCATTCTT
TGATCTGATCTCGAATATGAAAAAGAGGTTGGAACCGAGAGAAATACCCC
TCATTATCTGGAAATCAACAACTTATCCCATCTTAGAGAATTTCAAGCCG
AGTACAACAACTCAATTACGATTCTTAACAAAGCAGaGAGTGAGGTATTG
GAATTCGTACTCCCTCCAAATGATGAAAAGACGGCACATTCCGATCCTTG
ACGTCACTACCATGGCAACATCGTATCCATGGGGTCCATATGACATCATG
CATTATAACAACCTCGTTTTCAGACAAGCTGAAGATGATTTAGAAACTTT
TATAATTGAGAAGTTAAGTTCAAAGGACATGTTGAAAAGTAAATGGATGA
GTTTCGTTCATTAGTATACAGAGTGTTACAAACGTTGGGGAGTATGATCA
ATTCTTTCCCTCTGTAGCTTTTAGCAATTTCTTTAGACAAATcattactg
aggttaagcataccaggataatcacgacgacggacgaaaaatgtaatagg
ctagtgaaaatacgaagtttgattggtcgaaactcactagcctgttaaat
tttcgttcgtcgtcctGATTTTgtcgatttacttaacctcactactatct
aagaaataagcccaaagctgaagaaaatttgcaaacgggctttttgccaa
aaagagtttacagccggtagagtttgccttcgaaactctcccgccgattt
ttttctgtCTACCGCCATACCActatattttcccgcctttactatcactg
taatgGACGATAACATCATCTACAATTTCTTATGCATGATTATTGGAACC
CTGGGCAATTAAGTGAATGTTTTCGATAGCTCATAAAGTATTTCGCGGtc
aattaaaacaaaagaaaagcaGTTTCAAGGGATTATCAGTACTAATTTTT
ACGTTGGTTTTTCGGTAtttcttttatcaatttttctttataaccGTTTT
GGGTGTGACCTGGTCGGAAGGGGGCCTACTACAACATTAAAAAAGTAtct
gtttatttatttgtatactttttttctctgaatttgATGTAACTAGGTCA
ATATTTTCAGACAATTTTTAATAAGATACTAAGATTCGATTCTAGTTCAA
CCGCATCAAATTAATATTGATGTAATTGTCATTTTTCAGCATCAAAG Run BLAST on NCBI transcript from alignment at scaffold_82:247183..251505+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072690 ID=TCONS_00072690|Name=TCONS_00072690|organism=Clytia hemisphaerica|type=transcript|length=4323bp|location=Sequence derived from alignment at scaffold_82:247183..251505+ (Clytia hemisphaerica)
AACAAAGAGAATCTCCATTCTTGCTTAGAAAGAATCGTAGTATCATGGca
accaaaaagaaaaacgacTTTAACCACGTGTGGAACTTGTGTTTTGATAT
GAAAGTGTTACATGCTCATCCATTCCCACTAAAAAAATATGTAAGTTTGA
TTTTATCTTTTACATCAAGGTAagtaattttggcgggaactttaCTTTGG
CTATTTTCTTTTACCTTTTACCTTTTACCAACCTTATATTAACGATGTTA
TATTTACTATAGGgatacaaactttcgcgagcagaaactttggCGATTTT
AGCCGTTATTGCGAAagtaaatatctttgaaaattcttggaagggccatt
cgcgaaagtttatcctcgcaaaaaattcttaacaaaatagaaaatctgtg
aaacttcaaattttgaataaattgtAAGATTTATATGACACTTTTTAGCT
TGTTAAACCTCAGAATTTCAATCCAATTCAAAGTCAGAATTTCAATCCAA
TTcgagaagtatttgtccctctaagccattttttcatgtcatgtgaaaat
tttcatttttatgtctttatttttaagtcgGGTGAAAGTTTATGTTgcaa
atttcgcgaattttcgacctcgcgaaagtttgtacgcctaaagtaaggAA
CGTCCAGCCACCAtgcaaatatttcatttttaagattaGGTGAAACAAAA
ATAACATAACGATACACCTGCGTGTGTAATCCTAAACCACCCAACGAAGG
ATAGGAGACTTTCTACAATTAGAATCACTCTGCGATTCGAAGGAATTAGA
TTCTCTGTTTTTGAGTGTGAATTAGTATACAACAACGAATCTTGATATAA
TCTTGTCATCTTCTGTATTCTTTCAACAATTTTAGCTTAAAGATATCAGT
AATGGAGCAAAAAGAAACGATAAAAACAAGGCAATTCATATCTTCAGTAA
CATACACCATATTTGCATTGGTTTTATTGCGTTTATTATTGTTGCTGAAT
AACGACAGCTTGATTATAAACATCAGAGGTTTCGATGAACCCAAAGAAAT
CCAAATCATACACATCGAGAAGCGTCTAAACGCAATAACCAAGACGTATa
cgaaagaaaaatatgatttgAACACTTTGCAATTTCAAATGCAAAGTCTT
TGCAACCAGGATACGTTGAATGATCCTTGCTTGAAAGTTTTACCCTGGAA
ACTTCGTCATAAGCGGAGTGTTAACACTACAAGTGTAGATCAAAGTATTG
TCAAACTTCTTGTGCGTCCTTTAGGATATCCGAGCTTCGTTCAAATTATC
TCCCTAAACACACTCGGTGAGACGCAAACAACTGGAGGTGATTATTGGGA
TGTCAAACTTTGCGGAGATAAAAACACAACtctaaatattgaaatgatag
ACCATGACGACGGCTCTTACACAGGCTTTTTCTACCTACCAGAGGATCTG
ATGATATCAAGTAGtaaatttgaattgaaatatttgctgGAATACAGTCA
ATGTAACGGATTGAGAGACATGCCGGAAAATTGGTTCAAAACAGGTAATT
TCTAATTCGTGAGGTACAATTTGTTCTTCCCTAATAATAAGATTTTTCAT
GACAAAAGACCAGCACTcttgtttttgatgaaatttagtAGTACTGATAA
CTTTCCTTAAAATAAAAACCTTGAATTTCACTTTGATTCATGGCACATTT
NGAACTTTCCTTAAATTAAAAACCTTGAATTTCACTTTGATTCATGGCAC
ATTTggcaaatatttttcattttaatctCTCATTTTCAAAAGGGACGAtt
caaggaaaatttcaacGAGATGGTTCAATTGGAGACCATGATGATTTTCT
CCATCAATTACAAACcacaaaactattgttccataTACCACGTGATCAAA
ATGAATTCAACTCATTggtgcaaaattttgaaatttcccaaaAGAGTCAA
AAGCCTTTCAATAAATATTGTGGATTTTGGCATGATGGCTTGTTCAGGGA
ATTTCATCAAAAAGATGTTGCTAATACAGAGCCTCGTTTGAATGTCCATG
cacctccttttcaaacattaaaAATATTTGGAGATTCGATGGGACGACAC
TTCCACGAATCAATAGTTGCAAATCATTCTCTATGTAAAAACTTGTTCAA
GAAATGCGATTTATCTTACACGTGGGTTTACAAAATGTACAATCGAACCA
AAGACTTCCATGATGGCGTTCATATTTACGACGATAAAGactttaaccag
actcattatCTGGAAGACATTCGTAGAGATTTATACTCCAAAAACATGAG
ACATGACAAAAGTGTTTATTTGGTCAACTTTGGCGTCCATACTATTATGA
CTTTACCACTAAACAAGCTACGTGAACTTTTACAAGCATTCTTTGATCTG
ATCTCGAATATGAAAAAGAGGTTGGAACCGAGAGAAATACCCCTCATTAT
CTGGAAATCAACAACTTATCCCATCTTAGAGAATTTCAAGCCGAGTACAA
CAACTCAATTACGATTCTTAACAAAGCAGGTTAGTGGATAAGTTCAGGTT
AtacagaaaattaaaaaagctcCATTCCCCAAAATTCCCAcgttttaagg
gctctggtcatagtgaaaaatcaatttgaagataaaaccttatgttttcg
cttctttgacatgtttaagaacaaactgcttttgaaaaaatgaatttaag
taatcacatcatgagtaattaaggaataagtgtgacatggaccttaataa
aacgtcataacgacgccATTCATATACTTTCCACACAAAAGCCTAATCTC
TTTGGGGAAATCagtttattgtttcaaactttttttaagttaatgaccaa
taatttctttatttaggatttttcgaaaaaatttctatttggctacatcc
caagttatagctgttttcgtatggaaatttagtggagaaaattgccaaaa
ataaggttttttggagattttaaagaaaaagatacTGTTATACATTagtc
tttttaaaatgcagtaATTgacatttaagttggtgtaaaatcgaaaaatt
gggtattaccagagcccttaatttcGAAATAGACCATTACTTGTTCGTTA
ATTTTGCATTGGTCTCCTAAACTGGTTTCTAGTTCTCAGACAGAGGCTTG
GATGCCTTAACCCTATGGGCACGCAACGTCTTATGGACATTCAATGGATG
GCTTTAAGACCtttggacgtcctagaaacgtacattagacatccaaaaga
cgtttgtgcCCATTGGGAACATTATATCATCTTatgttgttttcattttt
atttcatttcagaGAGTGAGGTATTGGAATTCGTACTCCCTCCAAATGAT
GAAAAGACGGCACATTCCGATCCTTGACGTCACTACCATGGCAACATCGT
ATCCATGGGGTCCATATGACATCATGCATTATAACAACCTCGTTTTCAGA
CAAGCTGAAGATGATTTAGAAACTTTTATAATTGAGAAGTTAAGTTCAAA
GGACATGTTGAAAAGTAAATGGATGAGTTTCGTTCATTAGTATACAGAGT
GTTACAAACGTTGGGGAGTATGATCAATTCTTTCCCTCTGTAGCTTTTAG
CAATTTCTTTAGACAAATcattactgaggttaagcataccaggataatca
cgacgacggacgaaaaatgtaataggctagtgaaaatacgaagtttgatt
ggtcgaaactcactagcctgttaaattttcgttcgtcgtcctGATTTTgt
cgatttacttaacctcactactatctaagaaataagcccaaagctgaaga
aaatttgcaaacgggctttttgccaaaaagagtttacagccggtagagtt
tgccttcgaaactctcccgccgatttttttctgtCTACCGCCATACCAct
atattttcccgcctttactatcactgtaatgGACGATAACATCATCTACA
ATTTCTTATGCATGATTATTGGAACCCTGGGCAATTAAGTGAATGTTTTC
GATAGCTCATAAAGTATTTCGCGGtcaattaaaacaaaagaaaagcaGTT
TCAAGGGATTATCAGTACTAATTTTTACGTTGGTTTTTCGGTAtttcttt
tatcaatttttctttataaccGTTTTGGGTGTGACCTGGTCGGAAGGGGG
CCTACTACAACATTAAAAAAGTAtctgtttatttatttgtatactttttt
tctctgaatttgATGTAACTAGGTCAATATTTTCAGACAATTTTTAATAA
GATACTAAGATTCGATTCTAGTTCAACCGCATCAAATTAATATTGATGTA
ATTGTCATTTTTCAGCATCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072690-exon-scaffold_82-1491911889:247183..247322 | TCONS_00072690-exon-scaffold_82-1491911889:247183..247322 | Clytia hemisphaerica | exon |
| TCONS_00072690-exon-scaffold_82-1510915933:247183..247322 | TCONS_00072690-exon-scaffold_82-1510915933:247183..247322 | Clytia hemisphaerica | exon |
| TCONS_00072690-exon-scaffold_82-1575043694:247183..247322 | TCONS_00072690-exon-scaffold_82-1575043694:247183..247322 | Clytia hemisphaerica | exon |
| TCONS_00072690-exon-scaffold_82-1491911889:248068..248726 | TCONS_00072690-exon-scaffold_82-1491911889:248068..248726 | Clytia hemisphaerica | exon |
| TCONS_00072690-exon-scaffold_82-1510915933:248068..248726 | TCONS_00072690-exon-scaffold_82-1510915933:248068..248726 | Clytia hemisphaerica | exon |
| TCONS_00072690-exon-scaffold_82-1575043694:248068..248726 | TCONS_00072690-exon-scaffold_82-1575043694:248068..248726 | Clytia hemisphaerica | exon |
| TCONS_00072690-exon-scaffold_82-1491911889:248975..249711 | TCONS_00072690-exon-scaffold_82-1491911889:248975..249711 | Clytia hemisphaerica | exon |
| TCONS_00072690-exon-scaffold_82-1510915933:248975..249711 | TCONS_00072690-exon-scaffold_82-1510915933:248975..249711 | Clytia hemisphaerica | exon |
| TCONS_00072690-exon-scaffold_82-1575043694:248975..249711 | TCONS_00072690-exon-scaffold_82-1575043694:248975..249711 | Clytia hemisphaerica | exon |
| TCONS_00072690-exon-scaffold_82-1491911889:250495..251505 | TCONS_00072690-exon-scaffold_82-1491911889:250495..251505 | Clytia hemisphaerica | exon |
| TCONS_00072690-exon-scaffold_82-1510915933:250495..251505 | TCONS_00072690-exon-scaffold_82-1510915933:250495..251505 | Clytia hemisphaerica | exon |
| TCONS_00072690-exon-scaffold_82-1575043694:250495..251505 | TCONS_00072690-exon-scaffold_82-1575043694:250495..251505 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_82 | supercontig | scaffold_82:247183..251505 + |
Blast
The following BLAST results are available for this feature:
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