TCONS_00072690 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072690
Unique NameTCONS_00072690
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2547

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072690 ID=TCONS_00072690|Name=TCONS_00072690|organism=Clytia hemisphaerica|type=transcript|length=2547bp
AACAAAGAGAATCTCCATTCTTGCTTAGAAAGAATCGTAGTATCATGGca
accaaaaagaaaaacgacTTTAACCACGTGTGGAACTTGTGTTTTGATAT
GAAAGTGTTACATGCTCATCCATTCCCACTAAAAAAATATCTTAAAGATA
TCAGTAATGGAGCAAAAAGAAACGATAAAAACAAGGCAATTCATATCTTC
AGTAACATACACCATATTTGCATTGGTTTTATTGCGTTTATTATTGTTGC
TGAATAACGACAGCTTGATTATAAACATCAGAGGTTTCGATGAACCCAAA
GAAATCCAAATCATACACATCGAGAAGCGTCTAAACGCAATAACCAAGAC
GTATacgaaagaaaaatatgatttgAACACTTTGCAATTTCAAATGCAAA
GTCTTTGCAACCAGGATACGTTGAATGATCCTTGCTTGAAAGTTTTACCC
TGGAAACTTCGTCATAAGCGGAGTGTTAACACTACAAGTGTAGATCAAAG
TATTGTCAAACTTCTTGTGCGTCCTTTAGGATATCCGAGCTTCGTTCAAA
TTATCTCCCTAAACACACTCGGTGAGACGCAAACAACTGGAGGTGATTAT
TGGGATGTCAAACTTTGCGGAGATAAAAACACAACtctaaatattgaaat
gatagACCATGACGACGGCTCTTACACAGGCTTTTTCTACCTACCAGAGG
ATCTGATGATATCAAGTAGtaaatttgaattgaaatatttgctgGAATAC
AGTCAATGTAACGGATTGAGAGACATGCCGGAAAATTGGTTCAAAACAGG
GACGAttcaaggaaaatttcaacGAGATGGTTCAATTGGAGACCATGATG
ATTTTCTCCATCAATTACAAACcacaaaactattgttccataTACCACGT
GATCAAAATGAATTCAACTCATTggtgcaaaattttgaaatttcccaaaA
GAGTCAAAAGCCTTTCAATAAATATTGTGGATTTTGGCATGATGGCTTGT
TCAGGGAATTTCATCAAAAAGATGTTGCTAATACAGAGCCTCGTTTGAAT
GTCCATGcacctccttttcaaacattaaaAATATTTGGAGATTCGATGGG
ACGACACTTCCACGAATCAATAGTTGCAAATCATTCTCTATGTAAAAACT
TGTTCAAGAAATGCGATTTATCTTACACGTGGGTTTACAAAATGTACAAT
CGAACCAAAGACTTCCATGATGGCGTTCATATTTACGACGATAAAGactt
taaccagactcattatCTGGAAGACATTCGTAGAGATTTATACTCCAAAA
ACATGAGACATGACAAAAGTGTTTATTTGGTCAACTTTGGCGTCCATACT
ATTATGACTTTACCACTAAACAAGCTACGTGAACTTTTACAAGCATTCTT
TGATCTGATCTCGAATATGAAAAAGAGGTTGGAACCGAGAGAAATACCCC
TCATTATCTGGAAATCAACAACTTATCCCATCTTAGAGAATTTCAAGCCG
AGTACAACAACTCAATTACGATTCTTAACAAAGCAGaGAGTGAGGTATTG
GAATTCGTACTCCCTCCAAATGATGAAAAGACGGCACATTCCGATCCTTG
ACGTCACTACCATGGCAACATCGTATCCATGGGGTCCATATGACATCATG
CATTATAACAACCTCGTTTTCAGACAAGCTGAAGATGATTTAGAAACTTT
TATAATTGAGAAGTTAAGTTCAAAGGACATGTTGAAAAGTAAATGGATGA
GTTTCGTTCATTAGTATACAGAGTGTTACAAACGTTGGGGAGTATGATCA
ATTCTTTCCCTCTGTAGCTTTTAGCAATTTCTTTAGACAAATcattactg
aggttaagcataccaggataatcacgacgacggacgaaaaatgtaatagg
ctagtgaaaatacgaagtttgattggtcgaaactcactagcctgttaaat
tttcgttcgtcgtcctGATTTTgtcgatttacttaacctcactactatct
aagaaataagcccaaagctgaagaaaatttgcaaacgggctttttgccaa
aaagagtttacagccggtagagtttgccttcgaaactctcccgccgattt
ttttctgtCTACCGCCATACCActatattttcccgcctttactatcactg
taatgGACGATAACATCATCTACAATTTCTTATGCATGATTATTGGAACC
CTGGGCAATTAAGTGAATGTTTTCGATAGCTCATAAAGTATTTCGCGGtc
aattaaaacaaaagaaaagcaGTTTCAAGGGATTATCAGTACTAATTTTT
ACGTTGGTTTTTCGGTAtttcttttatcaatttttctttataaccGTTTT
GGGTGTGACCTGGTCGGAAGGGGGCCTACTACAACATTAAAAAAGTAtct
gtttatttatttgtatactttttttctctgaatttgATGTAACTAGGTCA
ATATTTTCAGACAATTTTTAATAAGATACTAAGATTCGATTCTAGTTCAA
CCGCATCAAATTAATATTGATGTAATTGTCATTTTTCAGCATCAAAG
Run BLAST on NCBI

transcript from alignment at scaffold_82:247183..251505+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072690 ID=TCONS_00072690|Name=TCONS_00072690|organism=Clytia hemisphaerica|type=transcript|length=4323bp|location=Sequence derived from alignment at scaffold_82:247183..251505+ (Clytia hemisphaerica)
AACAAAGAGAATCTCCATTCTTGCTTAGAAAGAATCGTAGTATCATGGca accaaaaagaaaaacgacTTTAACCACGTGTGGAACTTGTGTTTTGATAT GAAAGTGTTACATGCTCATCCATTCCCACTAAAAAAATATGTAAGTTTGA TTTTATCTTTTACATCAAGGTAagtaattttggcgggaactttaCTTTGG CTATTTTCTTTTACCTTTTACCTTTTACCAACCTTATATTAACGATGTTA TATTTACTATAGGgatacaaactttcgcgagcagaaactttggCGATTTT AGCCGTTATTGCGAAagtaaatatctttgaaaattcttggaagggccatt cgcgaaagtttatcctcgcaaaaaattcttaacaaaatagaaaatctgtg aaacttcaaattttgaataaattgtAAGATTTATATGACACTTTTTAGCT TGTTAAACCTCAGAATTTCAATCCAATTCAAAGTCAGAATTTCAATCCAA TTcgagaagtatttgtccctctaagccattttttcatgtcatgtgaaaat tttcatttttatgtctttatttttaagtcgGGTGAAAGTTTATGTTgcaa atttcgcgaattttcgacctcgcgaaagtttgtacgcctaaagtaaggAA CGTCCAGCCACCAtgcaaatatttcatttttaagattaGGTGAAACAAAA ATAACATAACGATACACCTGCGTGTGTAATCCTAAACCACCCAACGAAGG ATAGGAGACTTTCTACAATTAGAATCACTCTGCGATTCGAAGGAATTAGA TTCTCTGTTTTTGAGTGTGAATTAGTATACAACAACGAATCTTGATATAA TCTTGTCATCTTCTGTATTCTTTCAACAATTTTAGCTTAAAGATATCAGT AATGGAGCAAAAAGAAACGATAAAAACAAGGCAATTCATATCTTCAGTAA CATACACCATATTTGCATTGGTTTTATTGCGTTTATTATTGTTGCTGAAT AACGACAGCTTGATTATAAACATCAGAGGTTTCGATGAACCCAAAGAAAT CCAAATCATACACATCGAGAAGCGTCTAAACGCAATAACCAAGACGTATa cgaaagaaaaatatgatttgAACACTTTGCAATTTCAAATGCAAAGTCTT TGCAACCAGGATACGTTGAATGATCCTTGCTTGAAAGTTTTACCCTGGAA ACTTCGTCATAAGCGGAGTGTTAACACTACAAGTGTAGATCAAAGTATTG TCAAACTTCTTGTGCGTCCTTTAGGATATCCGAGCTTCGTTCAAATTATC TCCCTAAACACACTCGGTGAGACGCAAACAACTGGAGGTGATTATTGGGA TGTCAAACTTTGCGGAGATAAAAACACAACtctaaatattgaaatgatag ACCATGACGACGGCTCTTACACAGGCTTTTTCTACCTACCAGAGGATCTG ATGATATCAAGTAGtaaatttgaattgaaatatttgctgGAATACAGTCA ATGTAACGGATTGAGAGACATGCCGGAAAATTGGTTCAAAACAGGTAATT TCTAATTCGTGAGGTACAATTTGTTCTTCCCTAATAATAAGATTTTTCAT GACAAAAGACCAGCACTcttgtttttgatgaaatttagtAGTACTGATAA CTTTCCTTAAAATAAAAACCTTGAATTTCACTTTGATTCATGGCACATTT NGAACTTTCCTTAAATTAAAAACCTTGAATTTCACTTTGATTCATGGCAC ATTTggcaaatatttttcattttaatctCTCATTTTCAAAAGGGACGAtt caaggaaaatttcaacGAGATGGTTCAATTGGAGACCATGATGATTTTCT CCATCAATTACAAACcacaaaactattgttccataTACCACGTGATCAAA ATGAATTCAACTCATTggtgcaaaattttgaaatttcccaaaAGAGTCAA AAGCCTTTCAATAAATATTGTGGATTTTGGCATGATGGCTTGTTCAGGGA ATTTCATCAAAAAGATGTTGCTAATACAGAGCCTCGTTTGAATGTCCATG cacctccttttcaaacattaaaAATATTTGGAGATTCGATGGGACGACAC TTCCACGAATCAATAGTTGCAAATCATTCTCTATGTAAAAACTTGTTCAA GAAATGCGATTTATCTTACACGTGGGTTTACAAAATGTACAATCGAACCA AAGACTTCCATGATGGCGTTCATATTTACGACGATAAAGactttaaccag actcattatCTGGAAGACATTCGTAGAGATTTATACTCCAAAAACATGAG ACATGACAAAAGTGTTTATTTGGTCAACTTTGGCGTCCATACTATTATGA CTTTACCACTAAACAAGCTACGTGAACTTTTACAAGCATTCTTTGATCTG ATCTCGAATATGAAAAAGAGGTTGGAACCGAGAGAAATACCCCTCATTAT CTGGAAATCAACAACTTATCCCATCTTAGAGAATTTCAAGCCGAGTACAA CAACTCAATTACGATTCTTAACAAAGCAGGTTAGTGGATAAGTTCAGGTT AtacagaaaattaaaaaagctcCATTCCCCAAAATTCCCAcgttttaagg gctctggtcatagtgaaaaatcaatttgaagataaaaccttatgttttcg cttctttgacatgtttaagaacaaactgcttttgaaaaaatgaatttaag taatcacatcatgagtaattaaggaataagtgtgacatggaccttaataa aacgtcataacgacgccATTCATATACTTTCCACACAAAAGCCTAATCTC TTTGGGGAAATCagtttattgtttcaaactttttttaagttaatgaccaa taatttctttatttaggatttttcgaaaaaatttctatttggctacatcc caagttatagctgttttcgtatggaaatttagtggagaaaattgccaaaa ataaggttttttggagattttaaagaaaaagatacTGTTATACATTagtc tttttaaaatgcagtaATTgacatttaagttggtgtaaaatcgaaaaatt gggtattaccagagcccttaatttcGAAATAGACCATTACTTGTTCGTTA ATTTTGCATTGGTCTCCTAAACTGGTTTCTAGTTCTCAGACAGAGGCTTG GATGCCTTAACCCTATGGGCACGCAACGTCTTATGGACATTCAATGGATG GCTTTAAGACCtttggacgtcctagaaacgtacattagacatccaaaaga cgtttgtgcCCATTGGGAACATTATATCATCTTatgttgttttcattttt atttcatttcagaGAGTGAGGTATTGGAATTCGTACTCCCTCCAAATGAT GAAAAGACGGCACATTCCGATCCTTGACGTCACTACCATGGCAACATCGT ATCCATGGGGTCCATATGACATCATGCATTATAACAACCTCGTTTTCAGA CAAGCTGAAGATGATTTAGAAACTTTTATAATTGAGAAGTTAAGTTCAAA GGACATGTTGAAAAGTAAATGGATGAGTTTCGTTCATTAGTATACAGAGT GTTACAAACGTTGGGGAGTATGATCAATTCTTTCCCTCTGTAGCTTTTAG CAATTTCTTTAGACAAATcattactgaggttaagcataccaggataatca cgacgacggacgaaaaatgtaataggctagtgaaaatacgaagtttgatt ggtcgaaactcactagcctgttaaattttcgttcgtcgtcctGATTTTgt cgatttacttaacctcactactatctaagaaataagcccaaagctgaaga aaatttgcaaacgggctttttgccaaaaagagtttacagccggtagagtt tgccttcgaaactctcccgccgatttttttctgtCTACCGCCATACCAct atattttcccgcctttactatcactgtaatgGACGATAACATCATCTACA ATTTCTTATGCATGATTATTGGAACCCTGGGCAATTAAGTGAATGTTTTC GATAGCTCATAAAGTATTTCGCGGtcaattaaaacaaaagaaaagcaGTT TCAAGGGATTATCAGTACTAATTTTTACGTTGGTTTTTCGGTAtttcttt tatcaatttttctttataaccGTTTTGGGTGTGACCTGGTCGGAAGGGGG CCTACTACAACATTAAAAAAGTAtctgtttatttatttgtatactttttt tctctgaatttgATGTAACTAGGTCAATATTTTCAGACAATTTTTAATAA GATACTAAGATTCGATTCTAGTTCAACCGCATCAAATTAATATTGATGTA ATTGTCATTTTTCAGCATCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045119XLOC_045119Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072690-exon-scaffold_82-1491911889:247183..247322TCONS_00072690-exon-scaffold_82-1491911889:247183..247322Clytia hemisphaericaexon
TCONS_00072690-exon-scaffold_82-1510915933:247183..247322TCONS_00072690-exon-scaffold_82-1510915933:247183..247322Clytia hemisphaericaexon
TCONS_00072690-exon-scaffold_82-1575043694:247183..247322TCONS_00072690-exon-scaffold_82-1575043694:247183..247322Clytia hemisphaericaexon
TCONS_00072690-exon-scaffold_82-1491911889:248068..248726TCONS_00072690-exon-scaffold_82-1491911889:248068..248726Clytia hemisphaericaexon
TCONS_00072690-exon-scaffold_82-1510915933:248068..248726TCONS_00072690-exon-scaffold_82-1510915933:248068..248726Clytia hemisphaericaexon
TCONS_00072690-exon-scaffold_82-1575043694:248068..248726TCONS_00072690-exon-scaffold_82-1575043694:248068..248726Clytia hemisphaericaexon
TCONS_00072690-exon-scaffold_82-1491911889:248975..249711TCONS_00072690-exon-scaffold_82-1491911889:248975..249711Clytia hemisphaericaexon
TCONS_00072690-exon-scaffold_82-1510915933:248975..249711TCONS_00072690-exon-scaffold_82-1510915933:248975..249711Clytia hemisphaericaexon
TCONS_00072690-exon-scaffold_82-1575043694:248975..249711TCONS_00072690-exon-scaffold_82-1575043694:248975..249711Clytia hemisphaericaexon
TCONS_00072690-exon-scaffold_82-1491911889:250495..251505TCONS_00072690-exon-scaffold_82-1491911889:250495..251505Clytia hemisphaericaexon
TCONS_00072690-exon-scaffold_82-1510915933:250495..251505TCONS_00072690-exon-scaffold_82-1510915933:250495..251505Clytia hemisphaericaexon
TCONS_00072690-exon-scaffold_82-1575043694:250495..251505TCONS_00072690-exon-scaffold_82-1575043694:250495..251505Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_82supercontigscaffold_82:247183..251505 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.16793e-08 0.000517194 0 0.588919 10.0463 11.2276 19.065 15.276 3.48263 5.17249 5.06164 3.27129 0.894506 0.611304 0 2.4331e-09 1.39586 1.08498 0.890694 3.47906e-08 0.477139 0 2.16533e-05 0.00377547 0.811864 1.16893 0.00529571 0.605765 3.09749e-08 0.00222069
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072690 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top