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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072687 ID=TCONS_00072687|Name=TCONS_00072687|organism=Clytia hemisphaerica|type=transcript|length=4010bp
ttaatcattgttcattattgttCTGTGGTATAATTGTaatcaatcaaata
aaatttgtacaaaatcataaataatacGTAATTCAATAATTCTGTATAAA
AATATAACAACAACCTTCAAATTCAttataaagatataaaaaaaattcat
gcaTTACCAACCCTGGTATTACAAAACAATATACtattaaaaaagttaca
ataaaaatataaaaaaataatgcaatgattaaaaaaaagtcaaggCAAGG
GATTCTACACATAATCAAGaaaaaaacttccagaaacttctccattccat
ttcctgcatgttgaccaatcgggcaaaattctacaagcggaatagaatct
actgtcaaaagctgagtaaaatgcccgcggcgcctgctataaaaaagaaa
aagtttttaggctagcaactgccgtcccggaaaaaaaaaccgaacattta
cagaagagactaactacggcgatgcttgcgcgacaaaacacacaaaaaca
acaaaatttcgagattccagtccaatatctatgcgtgaagctatgactGC
TTCCTCACTCACTTCGTTCGTTGCGGGGGCAATCATCAATTTTAGTTTTC
TTGTTTACCTCATTAAAACTGTCAGCGCTATCAATGCCTCcatgcttgat
gctcagcaattaagagaacgATCGCGAGTAAGTTGAGCAATCCTGTGAGA
AAGAATGACGCTGTtccctaccttcaggtagatagctaGGAGCTTTAGGG
TTGCCTCTGACTGCCGTCAAACTTAGTTACTAATTCTTTACTTTTGGTAG
ATTGATTAGGGACAGGTTCTCATTTCACTGATTTAGATTGCCAACTACGT
GTATTAGTTTTCTGTTTTGAATTGTGTATTCAGCTTTTTCGGTTTGTGGC
TTTTACTTTGAACTTAGAATCCTCTTTTTCAGAAGGTTTGCTTTCTGTTT
CAGACTCTCCTGCTTCACTAACAACTCTCTCAAtatcgagtttatgtatt
tccTTTTTTGAGGGCGGTGGACGATGGCGGGCATGGTTGCAAAGTTGATA
TTCGGTGAAAAACAAATTGAGATAGTGTTTTACCGTCGTCGTCCTTTTTT
CGAGAAATACATAAACAAAAAACTTCTGCATCCTTTTCTAGGTCACACAT
ATCCTGTAACAACACTTCCAGCTCGGCTGGAACAGGATCATTCATACCAC
TCCCTCTAATTTGACCATTCTGATCTTTCTTAAATTCGGTCATTAGCTCT
GATAAACGTTCACGTATATTTCGTTTCTTTAAGGGCCTGCCAGTTATTGT
GGTCATTTTCACGGataatttttcataaatatcACCCCTGGCAGGTGTCC
CTTTTGTTGTACTAAACAACTCCTCCGTCATAGCTTCCCGACATAGTTTT
ATATCCTCTTCTCTTGTAAATTTGGACAGTCTGGGAGTCGATGAAGAAGA
TTTTTTAgatattgatgatgatgatgatgatgcaGGAACAGTAGTAGAAC
GACACACAGGAACAGTAGTTACGTTTGATGAAATGGATGGGATTAAAACA
TTAACAGCAGGACGACAAACAGGAACATTAACACCCACATGGGAACTAAC
GACAACAGGAACAGCGGGATGCATTTGTGATGGTCGCAACAGGAGGACGA
GACATGGATGCAACACCAGGGATAGTAAAACGACTAACAGGAACATTAAC
AGAAGGACGGCAAACAGGAACAGCAGGACGATTTGTAATGGTCGCAACAG
GAGGACGAAAAGGAGGACGAGAAACAACAGGAACTGAAACCACAGGACAT
TTAAACAAAGTTTTTGGTTGTTGACTAGCAACGAtaacttttttcttctt
ggGTGTAGCGGTTATTACGGTTATTGCTGTCGATGGATTGACGTTCTCCT
TTTGTGAGTTTGGTGTGGTTGTtctgaaatagaaaaaataatgaactAAT
CAATGGAGGGTAAATAAcatccaaatcaaaacaaaacatgtaCGTTTTGA
TATTGCATAAAGATAAAAATCCAATCAATGGTTGCATCCAGTCAACTGAC
TGTTGAaataaaatatagaaaatatcCATATACTTACATTTTAAAGAGCT
GAGGTGCATGATTTTCCATGGTTAATTAATAAAGTTAAATACCAAATCTA
Caagttaaagtttttttcacaaagagaattaatgttttgtttttcttaac
ACCCAAACCGGTTACGGACAATACTTCCCCGGTAAAAAAAAGTTACTTCC
ACCTTAGATCATAACTGACTAAGGAGGACGGTATATCAggacttttaccg
tcctcgattttgcaggtcagaactgcgggtctGCTTCAGCCTGGGCAAAA
TACAGAAATCCGCACAGGCTACCCCGATCCGCCGTCTTCCATCACCGAAA
AgaacaaatacataaactcgctaatatcaATCAGCTGTCGTTTTTGAGTT
GTTGGTAGTTTGGGTGTTTTTTGTCGAGAAGAAGTACTGGGCTCCAAGTT
TTGTTTGTCTTTTTTTGCAGGGCTGGGATTTTCTCAGATGAGTTGATATA
GGAGGTGGTTGTAACATAGTGAAAGAAAGTGGTCTCAATTTCTTCCTCTC
TTGCTCGAGAGATCTTTCAAGACTGTCAATCTCGTCTGAAATCTGACCAA
GCTCAGCGAAGCCGATTATGGTACCAGTTGTCCTGCTGAAAACAAGGCCA
GACTTGATCTTCATCTCATCGAACATAATTGAACAAACTCTCTCGTGAGC
AGGATCTTCATAAAGTTTTAGTTCTATGGAACTTCATAATAATGTCAGGA
TTAAAAGAGGCACCACTTAATGCGAAGCTGGTATATTGTTGCAGTGTTGA
TCTATGTGGTAGTTGAAGAAACCCTGTCGATCTAAGTTGCTCGTATCCAC
TGTTCTGAGGGCTGGTACTTTATCTGGTGAAAGGATCTTGTCAAACACAA
TGACCTGCCATCTGTAATCCTCACTTAAAAGGTCTTTTGTGACGTATCAA
TTATTGGAGCATGTGTGCTATCCTTGGTTCGGATGAAGGTAAAGAAAggc
tttcaaattttcttcatgtataaagccattttgtttcgcaCTCTCTACAA
TCTTTATCGGTAATGGTGGCAATTTTTCATTTGACACTTTATAACTATGA
ATGCTTAATCTATTTAAACAAACAGCACAATCTGACTCAGTGGAATGCGT
TTCAAATTCTGCAATTGTCAGAGGTTTTGGGTTTGAGACTCGGTTCAACT
GACGAGCCCATTTTGCACATAATTTCTTAGGGTGGATAGATAACCAGGCa
tttgaaatatcatatttaaaCAACTTTCTAATTTCCTCTTTGCATTCAAG
TGCATATCCTGGCATGGGTGCAATGACTTCACCACGACAAAGACGACATA
TACTAGAAAGTTTTTTAATGTGGTCATCGGCCATTTTAAACAATTAACTA
GATATTTAgggatcaaaaaaaatttaattacgGTCTTTTAGTGTGATGTG
ATATCGAAAGAAACAAGTGCCTTGAAGTGCCTCGATAAGCTACTgacatg
attttttttgtattcGATCGAGAAAAGGTCAAGAAATACTGGGATGAAGT
TTCAAATAATAAATCATAGAAATGGCTCCAGAAATTCAACTTCTCTTCTG
TTAAGTTCTACAGGTCCTGAGCTTTTTTTGTGCTGGTGTTTTATGGAGAG
AATGTAAAATACCAATTCCTATGTCGCCTTATGGCCAAGTACAATCTCAA
AGCACTGATCGTCTGGACTGTTTGACCTCGTGAAAGGGTGACTTATATTG
TCTTCTTACAATGTTTTTAACGAATAACAAGATTTTTTAGTTTAGTCCTG
GATTTGTTTCGAGATTTTTAAAATTAACCAGGAACTATGAACtattaaac
aaaatttttctaaatattatcTGATGATGTTACAGACTTAATTTGCGAGG
GCGAATAAAACGATAATATCTAGTCGGATAATACTtgatatttttgtcta
ttttttgttG Run BLAST on NCBI transcript from alignment at scaffold_82:240200..245360+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072687 ID=TCONS_00072687|Name=TCONS_00072687|organism=Clytia hemisphaerica|type=transcript|length=5161bp|location=Sequence derived from alignment at scaffold_82:240200..245360+ (Clytia hemisphaerica)
ttaatcattgttcattattgttCTGTGGTATAATTGTaatcaatcaaata
aaatttgtacaaaatcataaataatacGTAATTCAATAATTCTGTATAAA
AATATAACAACAACCTTCAAATTCAttataaagatataaaaaaaattcat
gcaTTACCAACCCTGGTATTACAAAACAATATACtattaaaaaagttaca
ataaaaatataaaaaaataatgcaatgattaaaaaaaagtcaaggCAAGG
GATTCTACACATAATCAAGaaaaaaacttccagaaacttctccattccat
ttcctgcatgttgaccaatcgggcaaaattctacaagcggaatagaatct
actgtcaaaagctgagtaaaatgcccgcggcgcctgctataaaaaagaaa
aagtttttaggctagcaactgccgtcccggaaaaaaaaaccgaacattta
cagaagagactaactacggcgatgcttgcgcgacaaaacacacaaaaaca
acaaaatttcgagattccagtccaatatctatgcgtgaagctatgactGC
TTCCTCACTCACTTCGTTCGTTGCGGGGGCAATCATCAATTTTAGTTTTC
TTGTTTACCTCATTAAAACTGTCAGCGCTATCAATGCCTCcatgcttgat
gctcagcaattaagagaacgATCGCGAGTAAGTTGAGCAATCCTGTGAGA
AAGAATGACGCTGTtccctaccttcaggtagatagctaGGAGCTTTAGGG
TTGCCTCTGACTGCCGTCAAACTTAGTTACTAATTCTTTACTTTTGGTAG
ATTGATTAGGGACAGGTTCTCATTTCACTGATTTAGATTGCCAACTACGT
GTATTAGTTTTCTGTTTTGAATTGTGTATTCAGCTTTTTCGGTTTGTGGC
TTTTACTTTGAACTTAGAATCCTCTTTTTCAGAAGGTTTGCTTTCTGTTT
CAGACTCTCCTGCTTCACTAACAACTCTCTCAAtatcgagtttatgtatt
tccTTTTTTGAGGGCGGTGGACGATGGCGGGCATGGTTGCAAAGTTGATA
TTCGGTGAAAAACAAATTGAGATAGTGTTTTACCGTCGTCGTCCTTTTTT
CGAGAAATACATAAACAAAAAACTTCTGCATCCTTTTCTAGGTCACACAT
ATCCTGTAACAACACTTCCAGCTCGGCTGGAACAGGATCATTCATACCAC
TCCCTCTAATTTGACCATTCTGATCTTTCTTAAATTCGGTCATTAGCTCT
GATAAACGTTCACGTATATTTCGTTTCTTTAAGGGCCTGCCAGTTATTGT
GGTCATTTTCACGGataatttttcataaatatcACCCCTGGCAGGTGTCC
CTTTTGTTGTACTAAACAACTCCTCCGTCATAGCTTCCCGACATAGTTTT
ATATCCTCTTCTCTTGTAAATTTGGACAGTCTGGGAGTCGATGAAGAAGA
TTTTTTAgatattgatgatgatgatgatgatgcaGGAACAGTAGTAGAAC
GACACACAGGAACAGTAGTTACGTTTGATGAAATGGATGGGATTAAAACA
TTAACAGCAGGACGACAAACAGGAACATTAACACCCACATGGGAACTAAC
GACAACAGGAACAGCGGGATGCATTTGTGATGGTCGCAACAGGAGGACGA
GACATGGATGCAACACCAGGGATAGTAAAACGACTAACAGGAACATTAAC
AGAAGGACGGCAAACAGGAACAGCAGGACGATTTGTAATGGTCGCAACAG
GAGGACGAAAAGGAGGACGAGAAACAACAGGAACTGAAACCACAGGACAT
TTAAACAAAGTTTTTGGTTGTTGACTAGCAACGAtaacttttttcttctt
ggGTGTAGCGGTTATTACGGTTATTGCTGTCGATGGATTGACGTTCTCCT
TTTGTGAGTTTGGTGTGGTTGTtctgaaatagaaaaaataatgaactAAT
CAATGGAGGGTAAATAAcatccaaatcaaaacaaaacatgtaCGTTTTGA
TATTGCATAAAGATAAAAATCCAATCAATGGTTGCATCCAGTCAACTGAC
TGTTGAaataaaatatagaaaatatcCATATACTTACATTTTAAAGAGCT
GAGGTGCATGATTTTCCATGGTTAATTAATAAAGTTAAATACCAAATCTA
Caagttaaagtttttttcacaaagagaattaatgttttgtttttcttaac
ACCCAAACCGGTTACGGACAATACTTCCCCGGTAAAAAAAAGTTACTTCC
ACCTTAGATCATAACTGACTAAGGAGGACGGTATATCAggacttttaccg
tcctcgattttgcaggtcagaactgcgggtctGCTTCAGCCTGGGCAAAA
TACAGAAATCCGCACAGGCTACCCCGATCCGCCGTCTTCCATCACCGAAA
AgaacaaatacataaactcgctaatatcaATCAGCTGTCGTTTTTGAGTT
GTTGGTAGTTTGGGTGTTTTTTGTCGAGAAGAAGTACTGGGCTCCAAGTT
TTGTTTGTCTTTTTTTGCAGGGCTGGGATTTTCTCAGATGAGTTGATATA
GGAGGTGGTTGTAACATAGTGAAAGAAAGTGGTCTCAATTTCTTCCTCTC
TTGCTCGAGAGATCTTTCAAGACTGTCAATCTCGTCTGAAATCTGACCAA
GCTCAGCGAAGCCGATTATGGTACCAGTTGTCCTGCTGAAAACAAGGCCA
GACTTGATCTTCATCTCATCGAACATAATTGAACAAACTCTCTCGTGAGC
AGGATCTTCATAAAGTTTTAGTTCTATGGAACTTCATAATAATGTCAGGA
TTAAAAGAGGCACCACTTAATGCGAAGCTGGTATATTGTTGCAGTGTTGA
TCTATGTGGTAGTTGAAGAAACCCTGTCGATCTAAGTTGCTCGTATCCAC
TGTTCTGAGGGCTGGTACTTTATCTGGTGAAAGGATCTTGTCAAACACAA
TGACCTGCCATCTGTAATCCTCACTTAAAAGGTCTTTTGTGACGTATCAA
TTATTGGAGCATGTGTGCTATCCTTGGTTCGGATGAAGGTAAAGAAAggc
tttcaaattttcttcatgtataaagccattttgtttcgcaCTCTCTACAA
TCTTTATCGGTAATGGTGGCAATTTTTCATTTGACACTTTATAACTATGA
ATGCTTAATCTATTTAAACAAACAGCACAATCTGACTCAGTGGAATGCGT
TTCAAATTCTGCAATTGTCAGAGGTTTTGGGTTTGAGTTTCGGTTCAACT
GACGAGCGCATTTTGTACATAATTTCTTAGGGTGGATAGATAACCAGTCa
tttgaaatatcatatttaaaCAACTTGCTAATTTCCTCTGCATTCAGGTG
CTGTTTTGGGGTTAACATATCCTGGCATGTGCAATGACTTCACCACGACA
AAGACGACATATACTAGAAAGTTTTTTAATGTGGTCATCGGCCATTTTAA
ACNcaaccctacctactgagagctaTTTGGGTCCCTTAGAACTGAAAGGG
GGGGCACATAGTGCCCCCCGTGGATAACTTAGGATACGAACATTATTTTG
TCATGAAAATTGGTAAAGCAATGCTTAAACCTAtaacaaacaatttttga
tgacgtcatcaattgtatcaacaattagcaaaaatcacccaaaaaaactt
taaaaaaatgatgtttcttaaaattgctaTTGAAACAGACTGAGAAACAC
ATTCtccttcattttgcttttatttgaaagcttttacaatgtactaaatg
gaaattaaaatctaaattaaCAATTTTCTCGTAACGTTCtactatggcgc
gccaaaagtgaagaaaatgttataaactttcaaaaccgcgtaaaatcaga
acatttcaactttttcaagtcggtgatacttttttttgtcatatttatat
ttattttttgctgctAATTCTCGTGTACTAGGTTCCAAATAGACGNtact
tttttttgtcatatttatatttattttttgctgctAATTCTCCTTTAAGA
TGAAATAGAAGCaatacaaatgaaatggttCATTAAAGTATACCTGGTAA
CATGTTATAGTATCCTGGAGTAAGCACagaaaaaagagcaaaatagcCTG
TGCTGCAGTTGTGGGATGGTAGTGGTCACCGACAAACCTATCATTAGGAC
TAAAATACTTGAccaatgaaaaaatagttttaaccaaaacattccccaca
aaatttggtgaaaagtcataaaatttcagcttcatagcctcactagttaa
aaaatgtcggccaattttctaacaggggggggggcacaaagtgcccccct
ctcagtaggtagggttgAACAAACAGCACAATCTGACTCAGTGGAATGCG
TTTCAAATTCTGCAATTGTCTGAGGTTTTGGGTTTGAGACTCGGTTCAAC
TGACGAGCCCATTTTGCACATAATTTCTTAGGGTGGATAGATAACCAGGC
atttgaaatatcatatttaaaCAACTTTCTAATTTCCTCTTTGCATTCAA
GTGCATATCCTGGCATGGGTGCAATGACTTCACCACGACAAAGACGACAT
ATACTAGAAAGTTTTTTAATGTGGTCATCGGCCATTTTAAACAATTAACT
AGATATTTAgggatcaaaaaaaatttaattacgGTCTTTTAGTGTGATGT
GATATCGAAAGAAACAAGTGCCTTGAAGTGCCTCGATAAGCTACTgacat
gattttttttgtattcGATCGAGAAAAGGTCAAGAAATACTGGGATGAAG
TTTCAAATAATAAATCATAGAAATGGCTCCAGAAATTCAACTTCTCTTCT
GTTAAGTTCTACAGGTCCTGAGCTTTTTTTGTGCTGGTGTTTTATGGAGA
GAATGTAAAATACCAATTCCTATGTCGCCTTATGGCCAAGTACAATCTCA
AAGCACTGATCGTCTGGACTGTTTGACCTCGTGAAAGGGTGACTTATATT
GTCTTCTTACAATGTTTTTAACGAATAACAAGATTTTTTAGTTTAGTCCT
GGATTTGTTTCGAGATTTTTAAAATTAACCAGGAACTATGAACtattaaa
caaaatttttctaaatattatcTGATGATGTTACAGACTTAATTTGCGAG
GGCGAATAAAACGATAATATCTAGTCGGATAATACTtgatatttttgtct
attttttgttG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072687-exon-scaffold_82-1491911889:240200..243422 | TCONS_00072687-exon-scaffold_82-1491911889:240200..243422 | Clytia hemisphaerica | exon |
| TCONS_00072687-exon-scaffold_82-1510915933:240200..243422 | TCONS_00072687-exon-scaffold_82-1510915933:240200..243422 | Clytia hemisphaerica | exon |
| TCONS_00072687-exon-scaffold_82-1575043694:240200..243422 | TCONS_00072687-exon-scaffold_82-1575043694:240200..243422 | Clytia hemisphaerica | exon |
| TCONS_00072687-exon-scaffold_82-1491911889:244574..245360 | TCONS_00072687-exon-scaffold_82-1491911889:244574..245360 | Clytia hemisphaerica | exon |
| TCONS_00072687-exon-scaffold_82-1510915933:244574..245360 | TCONS_00072687-exon-scaffold_82-1510915933:244574..245360 | Clytia hemisphaerica | exon |
| TCONS_00072687-exon-scaffold_82-1575043694:244574..245360 | TCONS_00072687-exon-scaffold_82-1575043694:244574..245360 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_82 | supercontig | scaffold_82:240200..245360 + |
Blast
The following BLAST results are available for this feature:
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