TCONS_00072687 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072687
Unique NameTCONS_00072687
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4010

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072687 ID=TCONS_00072687|Name=TCONS_00072687|organism=Clytia hemisphaerica|type=transcript|length=4010bp
ttaatcattgttcattattgttCTGTGGTATAATTGTaatcaatcaaata
aaatttgtacaaaatcataaataatacGTAATTCAATAATTCTGTATAAA
AATATAACAACAACCTTCAAATTCAttataaagatataaaaaaaattcat
gcaTTACCAACCCTGGTATTACAAAACAATATACtattaaaaaagttaca
ataaaaatataaaaaaataatgcaatgattaaaaaaaagtcaaggCAAGG
GATTCTACACATAATCAAGaaaaaaacttccagaaacttctccattccat
ttcctgcatgttgaccaatcgggcaaaattctacaagcggaatagaatct
actgtcaaaagctgagtaaaatgcccgcggcgcctgctataaaaaagaaa
aagtttttaggctagcaactgccgtcccggaaaaaaaaaccgaacattta
cagaagagactaactacggcgatgcttgcgcgacaaaacacacaaaaaca
acaaaatttcgagattccagtccaatatctatgcgtgaagctatgactGC
TTCCTCACTCACTTCGTTCGTTGCGGGGGCAATCATCAATTTTAGTTTTC
TTGTTTACCTCATTAAAACTGTCAGCGCTATCAATGCCTCcatgcttgat
gctcagcaattaagagaacgATCGCGAGTAAGTTGAGCAATCCTGTGAGA
AAGAATGACGCTGTtccctaccttcaggtagatagctaGGAGCTTTAGGG
TTGCCTCTGACTGCCGTCAAACTTAGTTACTAATTCTTTACTTTTGGTAG
ATTGATTAGGGACAGGTTCTCATTTCACTGATTTAGATTGCCAACTACGT
GTATTAGTTTTCTGTTTTGAATTGTGTATTCAGCTTTTTCGGTTTGTGGC
TTTTACTTTGAACTTAGAATCCTCTTTTTCAGAAGGTTTGCTTTCTGTTT
CAGACTCTCCTGCTTCACTAACAACTCTCTCAAtatcgagtttatgtatt
tccTTTTTTGAGGGCGGTGGACGATGGCGGGCATGGTTGCAAAGTTGATA
TTCGGTGAAAAACAAATTGAGATAGTGTTTTACCGTCGTCGTCCTTTTTT
CGAGAAATACATAAACAAAAAACTTCTGCATCCTTTTCTAGGTCACACAT
ATCCTGTAACAACACTTCCAGCTCGGCTGGAACAGGATCATTCATACCAC
TCCCTCTAATTTGACCATTCTGATCTTTCTTAAATTCGGTCATTAGCTCT
GATAAACGTTCACGTATATTTCGTTTCTTTAAGGGCCTGCCAGTTATTGT
GGTCATTTTCACGGataatttttcataaatatcACCCCTGGCAGGTGTCC
CTTTTGTTGTACTAAACAACTCCTCCGTCATAGCTTCCCGACATAGTTTT
ATATCCTCTTCTCTTGTAAATTTGGACAGTCTGGGAGTCGATGAAGAAGA
TTTTTTAgatattgatgatgatgatgatgatgcaGGAACAGTAGTAGAAC
GACACACAGGAACAGTAGTTACGTTTGATGAAATGGATGGGATTAAAACA
TTAACAGCAGGACGACAAACAGGAACATTAACACCCACATGGGAACTAAC
GACAACAGGAACAGCGGGATGCATTTGTGATGGTCGCAACAGGAGGACGA
GACATGGATGCAACACCAGGGATAGTAAAACGACTAACAGGAACATTAAC
AGAAGGACGGCAAACAGGAACAGCAGGACGATTTGTAATGGTCGCAACAG
GAGGACGAAAAGGAGGACGAGAAACAACAGGAACTGAAACCACAGGACAT
TTAAACAAAGTTTTTGGTTGTTGACTAGCAACGAtaacttttttcttctt
ggGTGTAGCGGTTATTACGGTTATTGCTGTCGATGGATTGACGTTCTCCT
TTTGTGAGTTTGGTGTGGTTGTtctgaaatagaaaaaataatgaactAAT
CAATGGAGGGTAAATAAcatccaaatcaaaacaaaacatgtaCGTTTTGA
TATTGCATAAAGATAAAAATCCAATCAATGGTTGCATCCAGTCAACTGAC
TGTTGAaataaaatatagaaaatatcCATATACTTACATTTTAAAGAGCT
GAGGTGCATGATTTTCCATGGTTAATTAATAAAGTTAAATACCAAATCTA
Caagttaaagtttttttcacaaagagaattaatgttttgtttttcttaac
ACCCAAACCGGTTACGGACAATACTTCCCCGGTAAAAAAAAGTTACTTCC
ACCTTAGATCATAACTGACTAAGGAGGACGGTATATCAggacttttaccg
tcctcgattttgcaggtcagaactgcgggtctGCTTCAGCCTGGGCAAAA
TACAGAAATCCGCACAGGCTACCCCGATCCGCCGTCTTCCATCACCGAAA
AgaacaaatacataaactcgctaatatcaATCAGCTGTCGTTTTTGAGTT
GTTGGTAGTTTGGGTGTTTTTTGTCGAGAAGAAGTACTGGGCTCCAAGTT
TTGTTTGTCTTTTTTTGCAGGGCTGGGATTTTCTCAGATGAGTTGATATA
GGAGGTGGTTGTAACATAGTGAAAGAAAGTGGTCTCAATTTCTTCCTCTC
TTGCTCGAGAGATCTTTCAAGACTGTCAATCTCGTCTGAAATCTGACCAA
GCTCAGCGAAGCCGATTATGGTACCAGTTGTCCTGCTGAAAACAAGGCCA
GACTTGATCTTCATCTCATCGAACATAATTGAACAAACTCTCTCGTGAGC
AGGATCTTCATAAAGTTTTAGTTCTATGGAACTTCATAATAATGTCAGGA
TTAAAAGAGGCACCACTTAATGCGAAGCTGGTATATTGTTGCAGTGTTGA
TCTATGTGGTAGTTGAAGAAACCCTGTCGATCTAAGTTGCTCGTATCCAC
TGTTCTGAGGGCTGGTACTTTATCTGGTGAAAGGATCTTGTCAAACACAA
TGACCTGCCATCTGTAATCCTCACTTAAAAGGTCTTTTGTGACGTATCAA
TTATTGGAGCATGTGTGCTATCCTTGGTTCGGATGAAGGTAAAGAAAggc
tttcaaattttcttcatgtataaagccattttgtttcgcaCTCTCTACAA
TCTTTATCGGTAATGGTGGCAATTTTTCATTTGACACTTTATAACTATGA
ATGCTTAATCTATTTAAACAAACAGCACAATCTGACTCAGTGGAATGCGT
TTCAAATTCTGCAATTGTCAGAGGTTTTGGGTTTGAGACTCGGTTCAACT
GACGAGCCCATTTTGCACATAATTTCTTAGGGTGGATAGATAACCAGGCa
tttgaaatatcatatttaaaCAACTTTCTAATTTCCTCTTTGCATTCAAG
TGCATATCCTGGCATGGGTGCAATGACTTCACCACGACAAAGACGACATA
TACTAGAAAGTTTTTTAATGTGGTCATCGGCCATTTTAAACAATTAACTA
GATATTTAgggatcaaaaaaaatttaattacgGTCTTTTAGTGTGATGTG
ATATCGAAAGAAACAAGTGCCTTGAAGTGCCTCGATAAGCTACTgacatg
attttttttgtattcGATCGAGAAAAGGTCAAGAAATACTGGGATGAAGT
TTCAAATAATAAATCATAGAAATGGCTCCAGAAATTCAACTTCTCTTCTG
TTAAGTTCTACAGGTCCTGAGCTTTTTTTGTGCTGGTGTTTTATGGAGAG
AATGTAAAATACCAATTCCTATGTCGCCTTATGGCCAAGTACAATCTCAA
AGCACTGATCGTCTGGACTGTTTGACCTCGTGAAAGGGTGACTTATATTG
TCTTCTTACAATGTTTTTAACGAATAACAAGATTTTTTAGTTTAGTCCTG
GATTTGTTTCGAGATTTTTAAAATTAACCAGGAACTATGAACtattaaac
aaaatttttctaaatattatcTGATGATGTTACAGACTTAATTTGCGAGG
GCGAATAAAACGATAATATCTAGTCGGATAATACTtgatatttttgtcta
ttttttgttG
Run BLAST on NCBI

transcript from alignment at scaffold_82:240200..245360+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072687 ID=TCONS_00072687|Name=TCONS_00072687|organism=Clytia hemisphaerica|type=transcript|length=5161bp|location=Sequence derived from alignment at scaffold_82:240200..245360+ (Clytia hemisphaerica)
ttaatcattgttcattattgttCTGTGGTATAATTGTaatcaatcaaata aaatttgtacaaaatcataaataatacGTAATTCAATAATTCTGTATAAA AATATAACAACAACCTTCAAATTCAttataaagatataaaaaaaattcat gcaTTACCAACCCTGGTATTACAAAACAATATACtattaaaaaagttaca ataaaaatataaaaaaataatgcaatgattaaaaaaaagtcaaggCAAGG GATTCTACACATAATCAAGaaaaaaacttccagaaacttctccattccat ttcctgcatgttgaccaatcgggcaaaattctacaagcggaatagaatct actgtcaaaagctgagtaaaatgcccgcggcgcctgctataaaaaagaaa aagtttttaggctagcaactgccgtcccggaaaaaaaaaccgaacattta cagaagagactaactacggcgatgcttgcgcgacaaaacacacaaaaaca acaaaatttcgagattccagtccaatatctatgcgtgaagctatgactGC TTCCTCACTCACTTCGTTCGTTGCGGGGGCAATCATCAATTTTAGTTTTC TTGTTTACCTCATTAAAACTGTCAGCGCTATCAATGCCTCcatgcttgat gctcagcaattaagagaacgATCGCGAGTAAGTTGAGCAATCCTGTGAGA AAGAATGACGCTGTtccctaccttcaggtagatagctaGGAGCTTTAGGG TTGCCTCTGACTGCCGTCAAACTTAGTTACTAATTCTTTACTTTTGGTAG ATTGATTAGGGACAGGTTCTCATTTCACTGATTTAGATTGCCAACTACGT GTATTAGTTTTCTGTTTTGAATTGTGTATTCAGCTTTTTCGGTTTGTGGC TTTTACTTTGAACTTAGAATCCTCTTTTTCAGAAGGTTTGCTTTCTGTTT CAGACTCTCCTGCTTCACTAACAACTCTCTCAAtatcgagtttatgtatt tccTTTTTTGAGGGCGGTGGACGATGGCGGGCATGGTTGCAAAGTTGATA TTCGGTGAAAAACAAATTGAGATAGTGTTTTACCGTCGTCGTCCTTTTTT CGAGAAATACATAAACAAAAAACTTCTGCATCCTTTTCTAGGTCACACAT ATCCTGTAACAACACTTCCAGCTCGGCTGGAACAGGATCATTCATACCAC TCCCTCTAATTTGACCATTCTGATCTTTCTTAAATTCGGTCATTAGCTCT GATAAACGTTCACGTATATTTCGTTTCTTTAAGGGCCTGCCAGTTATTGT GGTCATTTTCACGGataatttttcataaatatcACCCCTGGCAGGTGTCC CTTTTGTTGTACTAAACAACTCCTCCGTCATAGCTTCCCGACATAGTTTT ATATCCTCTTCTCTTGTAAATTTGGACAGTCTGGGAGTCGATGAAGAAGA TTTTTTAgatattgatgatgatgatgatgatgcaGGAACAGTAGTAGAAC GACACACAGGAACAGTAGTTACGTTTGATGAAATGGATGGGATTAAAACA TTAACAGCAGGACGACAAACAGGAACATTAACACCCACATGGGAACTAAC GACAACAGGAACAGCGGGATGCATTTGTGATGGTCGCAACAGGAGGACGA GACATGGATGCAACACCAGGGATAGTAAAACGACTAACAGGAACATTAAC AGAAGGACGGCAAACAGGAACAGCAGGACGATTTGTAATGGTCGCAACAG GAGGACGAAAAGGAGGACGAGAAACAACAGGAACTGAAACCACAGGACAT TTAAACAAAGTTTTTGGTTGTTGACTAGCAACGAtaacttttttcttctt ggGTGTAGCGGTTATTACGGTTATTGCTGTCGATGGATTGACGTTCTCCT TTTGTGAGTTTGGTGTGGTTGTtctgaaatagaaaaaataatgaactAAT CAATGGAGGGTAAATAAcatccaaatcaaaacaaaacatgtaCGTTTTGA TATTGCATAAAGATAAAAATCCAATCAATGGTTGCATCCAGTCAACTGAC TGTTGAaataaaatatagaaaatatcCATATACTTACATTTTAAAGAGCT GAGGTGCATGATTTTCCATGGTTAATTAATAAAGTTAAATACCAAATCTA Caagttaaagtttttttcacaaagagaattaatgttttgtttttcttaac ACCCAAACCGGTTACGGACAATACTTCCCCGGTAAAAAAAAGTTACTTCC ACCTTAGATCATAACTGACTAAGGAGGACGGTATATCAggacttttaccg tcctcgattttgcaggtcagaactgcgggtctGCTTCAGCCTGGGCAAAA TACAGAAATCCGCACAGGCTACCCCGATCCGCCGTCTTCCATCACCGAAA AgaacaaatacataaactcgctaatatcaATCAGCTGTCGTTTTTGAGTT GTTGGTAGTTTGGGTGTTTTTTGTCGAGAAGAAGTACTGGGCTCCAAGTT TTGTTTGTCTTTTTTTGCAGGGCTGGGATTTTCTCAGATGAGTTGATATA GGAGGTGGTTGTAACATAGTGAAAGAAAGTGGTCTCAATTTCTTCCTCTC TTGCTCGAGAGATCTTTCAAGACTGTCAATCTCGTCTGAAATCTGACCAA GCTCAGCGAAGCCGATTATGGTACCAGTTGTCCTGCTGAAAACAAGGCCA GACTTGATCTTCATCTCATCGAACATAATTGAACAAACTCTCTCGTGAGC AGGATCTTCATAAAGTTTTAGTTCTATGGAACTTCATAATAATGTCAGGA TTAAAAGAGGCACCACTTAATGCGAAGCTGGTATATTGTTGCAGTGTTGA TCTATGTGGTAGTTGAAGAAACCCTGTCGATCTAAGTTGCTCGTATCCAC TGTTCTGAGGGCTGGTACTTTATCTGGTGAAAGGATCTTGTCAAACACAA TGACCTGCCATCTGTAATCCTCACTTAAAAGGTCTTTTGTGACGTATCAA TTATTGGAGCATGTGTGCTATCCTTGGTTCGGATGAAGGTAAAGAAAggc tttcaaattttcttcatgtataaagccattttgtttcgcaCTCTCTACAA TCTTTATCGGTAATGGTGGCAATTTTTCATTTGACACTTTATAACTATGA ATGCTTAATCTATTTAAACAAACAGCACAATCTGACTCAGTGGAATGCGT TTCAAATTCTGCAATTGTCAGAGGTTTTGGGTTTGAGTTTCGGTTCAACT GACGAGCGCATTTTGTACATAATTTCTTAGGGTGGATAGATAACCAGTCa tttgaaatatcatatttaaaCAACTTGCTAATTTCCTCTGCATTCAGGTG CTGTTTTGGGGTTAACATATCCTGGCATGTGCAATGACTTCACCACGACA AAGACGACATATACTAGAAAGTTTTTTAATGTGGTCATCGGCCATTTTAA ACNcaaccctacctactgagagctaTTTGGGTCCCTTAGAACTGAAAGGG GGGGCACATAGTGCCCCCCGTGGATAACTTAGGATACGAACATTATTTTG TCATGAAAATTGGTAAAGCAATGCTTAAACCTAtaacaaacaatttttga tgacgtcatcaattgtatcaacaattagcaaaaatcacccaaaaaaactt taaaaaaatgatgtttcttaaaattgctaTTGAAACAGACTGAGAAACAC ATTCtccttcattttgcttttatttgaaagcttttacaatgtactaaatg gaaattaaaatctaaattaaCAATTTTCTCGTAACGTTCtactatggcgc gccaaaagtgaagaaaatgttataaactttcaaaaccgcgtaaaatcaga acatttcaactttttcaagtcggtgatacttttttttgtcatatttatat ttattttttgctgctAATTCTCGTGTACTAGGTTCCAAATAGACGNtact tttttttgtcatatttatatttattttttgctgctAATTCTCCTTTAAGA TGAAATAGAAGCaatacaaatgaaatggttCATTAAAGTATACCTGGTAA CATGTTATAGTATCCTGGAGTAAGCACagaaaaaagagcaaaatagcCTG TGCTGCAGTTGTGGGATGGTAGTGGTCACCGACAAACCTATCATTAGGAC TAAAATACTTGAccaatgaaaaaatagttttaaccaaaacattccccaca aaatttggtgaaaagtcataaaatttcagcttcatagcctcactagttaa aaaatgtcggccaattttctaacaggggggggggcacaaagtgcccccct ctcagtaggtagggttgAACAAACAGCACAATCTGACTCAGTGGAATGCG TTTCAAATTCTGCAATTGTCTGAGGTTTTGGGTTTGAGACTCGGTTCAAC TGACGAGCCCATTTTGCACATAATTTCTTAGGGTGGATAGATAACCAGGC atttgaaatatcatatttaaaCAACTTTCTAATTTCCTCTTTGCATTCAA GTGCATATCCTGGCATGGGTGCAATGACTTCACCACGACAAAGACGACAT ATACTAGAAAGTTTTTTAATGTGGTCATCGGCCATTTTAAACAATTAACT AGATATTTAgggatcaaaaaaaatttaattacgGTCTTTTAGTGTGATGT GATATCGAAAGAAACAAGTGCCTTGAAGTGCCTCGATAAGCTACTgacat gattttttttgtattcGATCGAGAAAAGGTCAAGAAATACTGGGATGAAG TTTCAAATAATAAATCATAGAAATGGCTCCAGAAATTCAACTTCTCTTCT GTTAAGTTCTACAGGTCCTGAGCTTTTTTTGTGCTGGTGTTTTATGGAGA GAATGTAAAATACCAATTCCTATGTCGCCTTATGGCCAAGTACAATCTCA AAGCACTGATCGTCTGGACTGTTTGACCTCGTGAAAGGGTGACTTATATT GTCTTCTTACAATGTTTTTAACGAATAACAAGATTTTTTAGTTTAGTCCT GGATTTGTTTCGAGATTTTTAAAATTAACCAGGAACTATGAACtattaaa caaaatttttctaaatattatcTGATGATGTTACAGACTTAATTTGCGAG GGCGAATAAAACGATAATATCTAGTCGGATAATACTtgatatttttgtct attttttgttG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045118XLOC_045118Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072687-exon-scaffold_82-1491911889:240200..243422TCONS_00072687-exon-scaffold_82-1491911889:240200..243422Clytia hemisphaericaexon
TCONS_00072687-exon-scaffold_82-1510915933:240200..243422TCONS_00072687-exon-scaffold_82-1510915933:240200..243422Clytia hemisphaericaexon
TCONS_00072687-exon-scaffold_82-1575043694:240200..243422TCONS_00072687-exon-scaffold_82-1575043694:240200..243422Clytia hemisphaericaexon
TCONS_00072687-exon-scaffold_82-1491911889:244574..245360TCONS_00072687-exon-scaffold_82-1491911889:244574..245360Clytia hemisphaericaexon
TCONS_00072687-exon-scaffold_82-1510915933:244574..245360TCONS_00072687-exon-scaffold_82-1510915933:244574..245360Clytia hemisphaericaexon
TCONS_00072687-exon-scaffold_82-1575043694:244574..245360TCONS_00072687-exon-scaffold_82-1575043694:244574..245360Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_82supercontigscaffold_82:240200..245360 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.282959 0.592811 0.418589 0.000494671 0.721769 1.51408e-05 1.11659 1.04825 1.62387e-08 1.41908 0.439811 0.00119039 7.74579e-06 0.885193 0.231585 0.100762 0.00209869 0.152085 0 0.626306 0 0 0 0 0.712684 1.99917 0 0.000741314 0 0.14416
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072687 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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