TCONS_00072578 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072578
Unique NameTCONS_00072578
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1430

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072578 ID=TCONS_00072578|Name=TCONS_00072578|organism=Clytia hemisphaerica|type=transcript|length=1430bp
GTGGTCTTCTCGGTCATAGAAGTTTAATGAcctgaattattttcaaaatt
ctttttgttatttgaCGTTGTTTGAAGCTGTTATATTTAAATttcagtaa
ttttttttcttatttttctgcAGATAAATACAACACacaagttaaagaaa
ataattttaataaaatacaaaatagaaaaagatgGATATTCCACCAAATC
AGACGATTTACATCAATAATTTgaacgaaaaaatgaaaaaagaagatcTA
AAGAAACATCTTTATACTCTGTTTTCACAGTTTGGACCTGTCATTGATAT
AGTTGCAATGAAAACACCAAAGATGAGGGGTCAGGCTTTTGTTGTGTTCC
GTGAAATTCCCATGGCAACAAATGCATTGAGGAGCATGCAAGGTTTTATA
TTCTTCGATAAAGCAATGAGGATAACTTTTGCGAGAAGTAAATCAGATGT
CTTTGCAAAGAATGATGGAACGTATTGGACAAAAGGGAAAGCTGAAAAAC
GAAAAGCAGAAGAagCACGTAAAAGACAACTGGCAGCCAAACAAGCTAGA
AGAGAAACAGTACCAGTTAAAGAAACTAATGGCCATACACCAGCACCGCC
AGCACCGAATGAGACTAATGGGGATAAAACAGATGAAATACCAACTAATA
ATATCTTATTCTTATCAAATCTTCCCGATGAAACGACACAAATGATGTTA
TCTATGTTGTTTCAAGAGATGCCTGGGTTCAAAGATGTACGGTTAGTAGA
TGGGAGGGCAGACATTGGCTTCGTTGAATTCGACACACCATCACAAGCAC
AAGTGGCAAAAGATCAGTTAGACGGCTTCAAAATTACACCTGAAAAAGCG
ATGGTCATTAAATATGCTAAGCAGTGATGACGAATTCCTTAAACTAGACT
TGTTTTTATATACTAAAAATATTCCTATAGAAACAACTGTCCTAGCTAAC
CCAAGATAGCACAtgtaaaaatttcatgtcaGGGTATTGAAGGGTCAATA
tttctaaaactttaaaacatatcaaatatgatttttaaaagCATCAGGCT
TGCCAGTCAATTTATCTGGAGATGAGATTGTCATCATCACCATTGATTTG
GCTACTATGAATATACGGGTCCTCATATTGGTAGTGTACGTTTTGTGGCC
TTGGGTAGCTTATTTCCCCAATAAGTTGTTTTAATGTCATTTAGACCATA
CGATTTTGAACAAAGAACTTGCTGGGGTCACGCTACTATTCAAATGATTT
TAATGGACTCTTaaaatgtgtcaatttttgtggcgtttttttagttaaca
atgtaaatatattttttgttttaaaagtgGTACTTTAACAGAAAATAtag
attctttattttttttttccttagTGCCAAGATCTATGTAACAAAATGAG
AAAGGACAAAAATCTTTCCTGAAATTCTAC
Run BLAST on NCBI

transcript from alignment at scaffold_8:488243..491091-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072578 ID=TCONS_00072578|Name=TCONS_00072578|organism=Clytia hemisphaerica|type=transcript|length=2849bp|location=Sequence derived from alignment at scaffold_8:488243..491091- (Clytia hemisphaerica)
GTGGTCTTCTCGGTCATAGAAGTTTAATGACCTGAATTATTTTCAAAATT
CTTTTTGTTATTTGACGTTGTTTGAAGCTGTTATATTTAAATTTCAGTAA
TTTTTTTTCTTATTTTTCTGCAGATAAATACAACACACAAGTTAAAGAAA
ATAATTTTAATAAAATACAAAATAGAAAAAGATGGATATTCCACCAAATC
AGACGATTTACATCAATAATTTGAACGAAAAAATGAAAAAAGAAGGTACT
TATTATTTTGAAAGTTAATCCTTTATCAAGTTCCAGTCTATCTTGTCTCA
ATTTCAACCAGGAGACTTTGTAGTAAATATTGCAGTCAATGCATCTGATT
ATGCCTAAAAGTATATTAATCAGATTTTACACTCTTTATAGTAATTTGCT
GATTTGCTAATGAATTTATAACATAAAATTAAACAGAAATTATATTTTTT
GCTATTCTCTATTCATAATAAGGAAAGAGCTCTCTGTTCTTTGCTTTATT
TGTCATTATAGGCTCTATCCAGCTCACTAATTTCTATCCTTTTCGAATTT
TCTTCTTTTAGATCTAAAGAAACATCTTTATACTCTGTTTTCACAGTTTG
GACCTGTCATTGATATAGTTGCAATGAAAACACCAAAGATGAGGGGTCAG
GCTTTTGTTGTGTTCCGTGAAATTCCCATGGCAACAAATGCATTGAGGAG
CATGCAAGGTTTTATATTCTTCGATAAAGCAATGGTATGCATTTTATTTC
ACCCCCTTCGGGAAACAGTTTGAAAAAATAACCTTAGCTTATAGTAAGGG
TAAAGGGGGGTAGAAATATTCAGAGGAACGTTTTGGCCACTTTGGCGTTT
TTTTTTTAATATAGGTAATACTGGGAGGAAATTACACTAAATACACTTTG
AGTCAAATTGTATTAATTTGTTATCTTAGTAACACTTATTTATACTTCTT
TTTCAAGAGGATAACTTTTGCGAGAAGTAAATCAGATGTCTTTGCAAAGA
ATGATGGAACGTATTGGACAAAAGGGAAAGCTGAAAAACGAAAAGCAGAA
GAAGGTTTCTTTTTTAATTTTTAGGAGATTTCCCAAGTTATTATCAATGT
TTCATTTGAATAAGTTTAGGTGCAACCAGTAATAGTAATGGTCATACCTA
TCTTCGAAAACGTTTTATTTTTTGGTCTTTTTCTGTTTACTCATTCAAAG
GGGGACATCGTCCAGGTCTTGTACTCCTGAATTTTTTCTCATTAGTGTGT
ATTCTCAAGTNGGGACATCGTCCAGGTCTTGTACTCCTGAATTTTTTCTC
TTTAGTGTGTATTCTCAAGTTTTTTTTATGGCATTTTACTTATAATTGGC
TTTCTATTTCTCTAAAGCACGTAAAAGACAACTGGCAGCCAAACAAGCTA
GAAGAGAAACAGTACCAGTTAAAGGTTTGTAATGACATAGTTTACCTATT
CAATTTATAGTTGTTTTCATTATAAGTTCAATAGATTATCAACTAAGGAT
TAACATATTGTTTGATGCAGTTTGATGTCATAAATTTTGTTTGTTTTTTT
TAATCGGAGATACTTTCGTATGAAAAATGATCATGATTATCTTTATTTTC
TTAGAAACTAATGGCCATACACCAGCACCGCCAGCACCGAATGAGACTAA
TGGGGATAAAACAGATGAAATACCAACTAATAATATCTTATTCTTATCAA
ATCTTCCCGATGAAACGACACAAATGATGTTATCTATGTTGTTTCAAGAG
TGAGTTGATAGTTTTAAGTGTTTAGTTGTCTTCATATTTTAATGCAGTTG
CCCTCTGAAAGTTTTAAATGTTTCAGAAAAGTCCCTACCCTAGTACACAG
CAGGCAATAAAAGATGGGTCTATTTCAGCCTTAAGGACTTAACTTGATCA
GTTGAATCTATACGAACAGATTTAAAACTTTTCAAGAGCCAAGCCAAGAG
TTTTCAATTTCACCGTATAATATGTTTAAAAAGTAAGTTTTTTTAATTAC
CTTTTGCCCTATTGGAAATCTTTAGGATGTCTGTGGCTTTTTAAAGAAAA
ATTTGAAACAACCATTTCACAAGCAAGTCATTATACCAAAAGTACACAGG
AATTGATTAAATTGAGAATCTTTTTTATTCGTTTAGGATGCCTGGGTTCA
AAGATGTACGGTTAGTAGATGGGAGGGCAGACATTGGCTTCGTTGAATTC
GACACACCATCACAAGCACAAGTGGCAAAAGATCAGTTAGACGGCTTCAA
AATTACACCTGAAAAAGCGATGGTCATTAAATATGCTAAGCAGTGATGAC
GAATTCCTTAAACTAGACTTGTTTTTATATACTAAAAATATTCCTATAGA
AACAACTGTCCTAGCTAACCCAAGATAGCACATGTAAAAATTTCATGTCA
GGGTATTGAAGGGTCAATATTTCTAAAACTTTAAAACATATCAAATATGA
TTTTTAAAAGCATCAGGCTTGCCAGTCAATTTATCTGGAGATGAGATTGT
CATCATCACCATTGATTTGGCTACTATGAATATACGGGTCCTCATATTGG
TAGTGTACGTTTTGTGGCCTTGGGTAGCTTATTTCCCCAATAAGTTGTTT
TAATGTCATTTAGACCATACGATTTTGAACAAAGAACTTGCTGGGGTCAC
GCTACTATTCAAATGATTTTAATGGACTCTTAAAATGTGTCAATTTTTGT
GGCGTTTTTTTAGTTAACAATGTAAATATATTTTTTGTTTTAAAAGTGGT
ACTTTAACAGAAAATATAGATTCTTTATTTTTTTTTTCCTTAGTGCCAAG
ATCTATGTAACAAAATGAGAAAGGACAAAAATCTTTCCTGAAATTCTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045038XLOC_045038Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072578-exon-scaffold_8-1575043694:490847..491091TCONS_00072578-exon-scaffold_8-1575043694:490847..491091Clytia hemisphaericaexon
TCONS_00072578-exon-scaffold_8-1575043694:490358..490530TCONS_00072578-exon-scaffold_8-1575043694:490358..490530Clytia hemisphaericaexon
TCONS_00072578-exon-scaffold_8-1575043694:490038..490134TCONS_00072578-exon-scaffold_8-1575043694:490038..490134Clytia hemisphaericaexon
TCONS_00072578-exon-scaffold_8-1575043694:489668..489724TCONS_00072578-exon-scaffold_8-1575043694:489668..489724Clytia hemisphaericaexon
TCONS_00072578-exon-scaffold_8-1575043694:489343..489487TCONS_00072578-exon-scaffold_8-1575043694:489343..489487Clytia hemisphaericaexon
TCONS_00072578-exon-scaffold_8-1575043694:488243..488955TCONS_00072578-exon-scaffold_8-1575043694:488243..488955Clytia hemisphaericaexon
TCONS_00072578-exon-scaffold_8-1510915933:490847..491091TCONS_00072578-exon-scaffold_8-1510915933:490847..491091Clytia hemisphaericaexon
TCONS_00072578-exon-scaffold_8-1510915933:490358..490530TCONS_00072578-exon-scaffold_8-1510915933:490358..490530Clytia hemisphaericaexon
TCONS_00072578-exon-scaffold_8-1510915933:490038..490134TCONS_00072578-exon-scaffold_8-1510915933:490038..490134Clytia hemisphaericaexon
TCONS_00072578-exon-scaffold_8-1510915933:489668..489724TCONS_00072578-exon-scaffold_8-1510915933:489668..489724Clytia hemisphaericaexon
TCONS_00072578-exon-scaffold_8-1510915933:489343..489487TCONS_00072578-exon-scaffold_8-1510915933:489343..489487Clytia hemisphaericaexon
TCONS_00072578-exon-scaffold_8-1510915933:488243..488955TCONS_00072578-exon-scaffold_8-1510915933:488243..488955Clytia hemisphaericaexon
TCONS_00072578-exon-scaffold_8-1491911889:490847..491091TCONS_00072578-exon-scaffold_8-1491911889:490847..491091Clytia hemisphaericaexon
TCONS_00072578-exon-scaffold_8-1491911889:490358..490530TCONS_00072578-exon-scaffold_8-1491911889:490358..490530Clytia hemisphaericaexon
TCONS_00072578-exon-scaffold_8-1491911889:490038..490134TCONS_00072578-exon-scaffold_8-1491911889:490038..490134Clytia hemisphaericaexon
TCONS_00072578-exon-scaffold_8-1491911889:489668..489724TCONS_00072578-exon-scaffold_8-1491911889:489668..489724Clytia hemisphaericaexon
TCONS_00072578-exon-scaffold_8-1491911889:489343..489487TCONS_00072578-exon-scaffold_8-1491911889:489343..489487Clytia hemisphaericaexon
TCONS_00072578-exon-scaffold_8-1491911889:488243..488955TCONS_00072578-exon-scaffold_8-1491911889:488243..488955Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:488243..491091 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.8256	17.1879	38.3334	45.1386	36.3785	18.5996	17.7423	21.2196	5.19127	5.10809	3.37156e-07	3.78369	0.929027	2.84878	2.37639	1.40369	10.2175	3.96197	2.04731	0.894441	6.86038	8.46124	14.9928	12.6795	7.1086	7.36565	6.16174	2.16245	7.98801	8.02389
Blast
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BLAST of TCONS_00072578 vs. Swiss-Prot (Human)
Match: RU2B (U2 small nuclear ribonucleoprotein B'' OS=Homo sapiens GN=SNRPB2 PE=1 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 7.957e-69
Identity = 122/233 (52.36%), Postives = 158/233 (67.81%), Query Frame = 2 
Query:  182 MDIPPNQTIYINNLNEKMKKEDLKKHLYTLFSQFGPVIDIVAMKTPKMRGQAFVVFREIPMATNALRSMQGFIFFDKAMRITFARSKSDVFAKNDGTYWTKGXXXXXXXXXXXXXXXXXXXXXXETVPVKETNGHTP--APPAPNETNGDKTDEIPTNNILFLSNLPDETTQMMLSMLFQEMPGFKDVRLVDGRADIGFVEFDTPSQAQVAKDQLDGFKITPEKAMVIKYAKQ 874
            MDI PN TIYINN+N+K+KKE+LK+ LY LFSQFG V+DIVA+KT KMRGQAFV+F+E+  +TNALR +QGF F+ K MRI +A++ SD+ +K  GT+           E+ ++++ A    +  T   K+    TP  A    N T   +  + P N ILFL+NLP+ET +MMLSMLF + PGFK+VRLV GR DI FVEF+   QA  A+D L GFKITP  AM I YAK+
Sbjct:    1 MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTF--------ADKEKKKEKKKAKTVEQTATTTNKKPGQGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
The following BLAST results are available for this feature:
BLAST of TCONS_00072578 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RU2B7.957e-6952.36U2 small nuclear ribonucleoprotein B'' OS=Homo sap... [more]
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