TCONS_00072553 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072553
Unique NameTCONS_00072553
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1022

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072553 ID=TCONS_00072553|Name=TCONS_00072553|organism=Clytia hemisphaerica|type=transcript|length=1022bp
AATCAAACAATAAAACAATGATGGAGGCCAGTGATAGAGTTGATCGTCAA
AAATATCGAACACAAGAATACTGGGAAGAAAGATTTCAGCATGAGTCACA
AGTGAATGAAGATAATGAAAATTCAAATGGAGCACATGAATGGTTTTCTA
CCTATCATTCTTTTAGCCATATTGTCACTGAAATTTGTCCACCTGACAAG
TATAAAAGGATTTTAGTTCCAGGAAATGGCAATTCTTCACTCTGCGCTGA
GCTTGTTGAAGATTATCCGAAAAGTCAAATTATTGGTGAAGATTTCTCAC
CGTCTGTTATCCAATATATgtcagaaaaatacaatgagATATCAAATTTA
TCTTGGTTTGTTGGTGATATAAGAGATATCCAACTGCATGGAGCTTCGAA
CacagaaaatcttttgtatGACATGATCATTGAAAAAGGAGTAATAGACG
CTCTAGTGGCTGGTTCAAAATCACCTTATGCTTCATATTTAGATCCTCAA
TGTCTAATAGATGTCGAACAGACTCTATTGTCGATTCGTAAATCACTTCA
TCGAGAGGGTCGATTTCTATCGATAAGTTTTGCATCACCAATGATTCGAT
TACCCTTATTATCTggtgtttttgagattttggttcATAGTTACATAAGT
GAGATGAGTGGCTTTGAGTATTATGTGTATGAATGTATAAATTCAATCTG
TGACAATGATGTGGATTTTCGTAAAAATATggaaaacgaaattttgaatt
ctgATCCAGTTGATTTGCCAGAGACTGATCCTTTGGCTATTGGAGATGTA
TTTGCTTAATTTTCTTCTGGTAAAGAGTAACTTTCAATGAATGAACATCA
ACGCACATGCTTAACACgtaACCTAAATTATCACACTTCACTTTCAAGAA
TTACAAAGTTGGCTGGCTGATCGGTTGTCAGCTTtgaaaaaaagccttga
aattgaATGCTGGTTGGGACAAAAATTCACTTGATCTGGTTTAGATCACT
CGTGACGAATTGTACGAAGGAC
Run BLAST on NCBI

protein sequence of TCONS_00072553-protein

>TCONS_00072553-protein ID=TCONS_00072553-protein|Name=TCONS_00072553-protein|organism=Clytia hemisphaerica|type=polypeptide|length=268bp
SNNKTMMEASDRVDRQKYRTQEYWEERFQHESQVNEDNENSNGAHEWFST
YHSFSHIVTEICPPDKYKRILVPGNGNSSLCAELVEDYPKSQIIGEDFSP
SVIQYMSEKYNEISNLSWFVGDIRDIQLHGASNTENLLYDMIIEKGVIDA
LVAGSKSPYASYLDPQCLIDVEQTLLSIRKSLHREGRFLSISFASPMIRL
PLLSGVFEILVHSYISEMSGFEYYVYECINSICDNDVDFRKNMENEILNS
DPVDLPETDPLAIGDVFA
Run BLAST on NCBI

transcript from alignment at scaffold_8:68870..72969-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072553 ID=TCONS_00072553|Name=TCONS_00072553|organism=Clytia hemisphaerica|type=transcript|length=4100bp|location=Sequence derived from alignment at scaffold_8:68870..72969- (Clytia hemisphaerica)
AATCAAACAATAAAACAATGATGGAGGCCAGTGATAGAGTTGATCGTCAA
AAATATCGAACACAAGAATACTGGGAAGAAAGATTTCAGCATGAGTCACA
AGTGAATGAAGATAATGAAAATTCAAATGGAGCACATGAATGGTTTTCTA
CCTATCATTCTTTTAGCCATATTGTCACTGAAATTTGTCCACCTGACAAG
TATAAAAGGATTTTAGGTAAGATTGAAGTTCTTGTGGATAAAAAACTCTG
TAACAAGCACCTTTATCCGTTCATTTTCATATTTCAAGAAGTTGACTTTA
GCAAATTTTAGTCCGTCAAAACTTTCATTTTGATAAAGTCTGCTTTGGCA
TCATGACAGTATTATCATTGTGTTACTTTTGTTACCTTTTCAGTTCCAGG
AAATGGCAATTCTTCACTCTGCGCTGAGCTTGTTGAAGATTATCCGAAAA
GTCAAATTATTGGTGAAGATTTCTCACCGTCTGTTATCCAATATATGTCA
GAAAAATACAATGAGATATCAAATTTATCTTGGTTTGTTGGTGATATAAG
AGATATCCAACTGCATGGAGCTTCGAACACAGAAAATCTTTTGTATGACA
TGATCATTGAAAAAGGAGTAATAGACGCTCTAGTGGCTGGTTCAAAATCA
CCTTATGCTTCATATTTAGATCCTCAATGTCTAATAGATGTCGAACAGAC
TCTATTGTCGATTCGTAAATCACTTCATCGAGAGGGTCGATTTCTATCGA
TAAGTTTTGCATCACCAATGATTCGATTACCCTTATTATCTGGTGTTTTT
GAGATTTTGGTTCATAGTTACATAAGTGAGATGAGTGGCTTTGAGTATTA
TGTGTATGAATGTATAAATTCAATCTGTGACAATGATGTGGATTTTCGTA
AAAATATGGAAAACGAAATTTTGAATTCTGATCCAGTTGATTTGCCAGAG
ACTGATCCTTTGGCTATTGGAGATGTATTTGCTTAATTTTCTTCTGGTAA
AGAGTAACTTTCAATGAATGAACATCAACGCACATGCTTAACACGTAAGA
CAAGTAATGACTTTTTATGTTTTTGTGCAGAAGATTTCGATGAAAGACAA
GATAAAATCACAGCAATCAATTGTCATGGGCTTGTATCTCTCATAGGTTA
TCGAGTTATCTGATATTCTTCTTAAATTTCAAAATTTCCTTTTCTTTTTC
AGGTAACCTAAATTATCACACTTCACTTTCAAGAATTACAAAGTTGGCTG
GCTGATCGGTTGTCAGCTTTGAAAAAAAGCCTTGAAATTGAATGCTGGTT
GGGACAAAAATTCACTTGATCTGGTTTAGGTATTTTATTATAATTTTACA
TTTGGCTGGCTGATTTTATAGCGGAATCATTTCCAGTTTGCAAATGCTGA
GCATTACGAAATTAATAAACATTTTGACGACAGAAACGAGAAAGAATAGG
ATCCAACATTTGAAGTCATTTTCCAAAAATCTAATAGGTCAATCAGAATA
TTAATTTGGGTCAAAAGGTTGATACGATAATATGATAAGTGTTTGAAGGT
TAAGCTAACATCTACTAGGTGTTAAGATATTTTTTCTTGACTAGAAACTT
TTGGAATGCTCCTGAAATCTCAATTATTCTGTTGGACACGTCATGGTGGC
TAATCATGACTCTTTCAGAAGGGAATTTATCTATTCAACTCTGACATCTT
AAAACCACTCTTGAAAAATTCATTTAATCACATCTTTCATTATACCTCCA
TGATAATTCCTTCCATATGAAACTCTACCATATGAAACATGGATGGAGAG
CCTTTTCAATCGCAACTCCAGGTCCTCTTGCATGATTTCAACTGTTTTTC
TTCCATTTCTTTTTGGACGAGCTTTGTTAGTTCTCCAAGATTTGATCCAC
TAAATTTTTGCACTTTCTTAGCAAAATTTGTATATCTCGGGACTTTCAGC
TGCTTTCAGACATTTTCGGTGACTGAAGCTTTGATTTTGTCTTTCCAACA
AATTTTTGCGTCATGTTCCATTGTATCTCCATGCTGGTTTGTCTTTCAAA
GGTGCTAGTGCATCATATTAGCACATTGATTTTGATTGACTTTTTAACTC
CGATCGACCATACTAATTTTAATAATTGTTTGTTATGAAGAAAACATTAA
GTATGTTGGGCTATAAGTTAAAAACTGTTTACATTCATTAAATTAATTAA
AAAGGAATATATCACAGCTTCACTCATTTTTTGAATATTTTCTATTTTCG
CTCATGAAAAATCACAAAAATTTGCAGGAACCTGTTTGGAACCTCCTCAG
AGGTCCTATAAATTAATACATGTTCGTTCCATCCGTCCATCCGTTAGTTC
AGTTGAAGTTATAGTGAAAGGCTTGGTAATCCTTTTTATGCCATGTAACT
TGACATTTGCTTCTCCATTTCCTTTATAGTTGGAAGTACGATAGGTTCAG
GTTTTGTATCGGCAACTGCATGTTTAGCTTTGAATGTTCCTTTGGATTTT
TTCTGAACACCTAGGTTTTATCGATTTTTCTAGAATCAAACTTCTTCACT
CTATCGATGAATTTCCAATGATATGTTAATTACGGGTTCTCTTTCACAAT
AAAGTTAAACTTCTGTTTTTATTGTTTTATACTATTTGAAAGGCTTCACA
AGGCAAAGTTTCTTATTTATAGTAAATTGTTGGAACCTCGATGGTTCCTG
ATGCTTTTCAGGTTTAGTGTATTTCATAATATAATTTAAAGAAGCTTGAA
TTTTAGCATCTTTTAAAATCACAAAATCGTCCCAAGAATGAAAACTTTGG
TCAAAAGAATGCTTAAAATAGAAACAGAATTCACACCTTTTCCTTAAGAA
CCAGGTGTTCTTGCCAATGTATCCCACTTTTTCAATTATGATGAACTTTT
TTGATATGGAGTATTGCTTTTGAAGGTAAAGAATAAATTCCTTCACATCG
TCCTTTTTGACTTTGCTCCCCAAGGTTATGGCATAGCCAAAAGCTGACGT
CAAGCAGTTTTCCAGGTGTTGGGTGGTAGTGAAAGCATCGAAGTCTAAAA
CATAGTCCTGTTGATAAGACTGGATAAGATGAGAAAATTTTCGTTAAAAT
ACAATGCTTAGAATATAAAGACAATTCACACATTTTCCTTTAAGAACCAG
GTGTTCTTGCCAATGTATCCCACTTTTTCAATTATGATGAACTTTTATGA
TATGGAATGGGTTTTTCCAGAAAAAAATCGTGCACCCCCTGTTGAGGAGG
TCCATTTCCGTTCCAAGGGGGGTAAGGTTTGAAATGCAGTGGAATTCCAT
AAAAGGGTAGACGAAAATCCGTCAAAAATAAGCTGAATTCCAAGGGGGTA
GTGATTGAAAATTTGTAAAAATTCGGAATTCCAAAGTTTTAAAAACTTTT
TTGATGGTAAAAGAAATTATCAAAATTCACACTTCAACTTCTTTTAATGG
TAATGAATTGTAGGTTTGTAGCCTTTTCTAAGAATAAAAGTATTTTTTTA
TTCTTGAAGTCATCTTTTTCTGCTTTTTTTTGGTTTTTTTTTTTTTTTCC
TTTATTTTCCTTATATTGTAACTTTGTTTGTCTTTTCCACCTTCTTTCAT
CCATATGAAATACGAATTCTTTAGGAAATGATAGTTATTGAGTTATTTCT
TCTTTTCTTATTGTGGTTGGATGATGAAGAGAAATAGAGGGACAGTTTAC
GGAGGTTCTCCGAAAATACGATTGTTTTCGCTCCATATAGAATTGACGTT
TTATAATTTTCATTCCGCGATGAAGAAGGCGTTGAATTCGTCGTCCCACT
TACTTCCATCACATTCGAATCCTTAGAAAAAGAAGTAAAACATCAATGAT
AATTTGACTCCTATTAGAGTATCACTCTAACCTGCTATGTTTCATCAGTC
TGCTCAAATTCAAATAGTCAAACAAGAAAGTTTTGGAAATTTCTAATTAA
ACTCCGTACGAAATATTCAAAATCTCTTACCAGACACCATTGGTGAAGCA
GGTCAAGACAAGAAGAATATTGTGAGCTGCGTAAGCTTTTGTTAGGGTGT
ATTTCGTGTTATTACCCATCAGATCACTCGTGACGAATTGTACGAAGGAC

Coding sequence (CDS) from alignment at scaffold_8:68870..72969-

>TCONS_00072553 ID=TCONS_00072553|Name=TCONS_00072553|organism=Clytia hemisphaerica|type=CDS|length=1614bp|location=Sequence derived from alignment at scaffold_8:68870..72969- (Clytia hemisphaerica)
TTCCAGGAAATGGCAATTCTTCACTCTGCGCTGAGCTTGTTGAAGATTAT
CCGAAAAGTCAAATTATTGGTGAAGATTTCTCACCGTCTGTTATCCAATA
TATGTCAGAAAAATACAATGAGATATCAAATTTATCTTGGTTTGTTGGTG
ATATAAGAGATATCCAACTGCATGGAGCTTCGAACACAGAAAATCTTTTG
TATGACATGATCATTGAAAAAGGAGTAATAGACGCTCTAGTGGCTGGTTC
AAAATCACCTTATGCTTCATATTTAGATCCTCAATGTCTAATAGATGTCG
AACAGACTCTATTGTCGATTCGTAAATCACTTCATCGAGAGGGTCGATTT
CTATCGATAAGTTTTGCATCACCAATGATTCGATTACCCTTATTATCTGG
TGTTTTTGAGATTTTGGTTCATAGTTACATAAGTGAGATGAGTGGCTTTG
AGTATTATGTGTATGAATGTATAAATTCAATCTGTGACAATGATGTGGAT
TTTCGTAAAAATATGGAAAACGAAATTTTGAATTCTGATCCAGTTGATTT
GCCAGAGACTGATCCTTTGGCTATTGGAGATGTATTTGCTTAATCAAACA
ATAAAACAATGATGGAGGCCAGTGATAGAGTTGATCGTCAAAAATATCGA
ACACAAGAATACTGGGAAGAAAGATTTCAGCATGAGTCACAAGTGAATGA
AGATAATGAAAATTCAAATGGAGCACATGAATGGTTTTCTACCTATCATT
CTTTTAGCCATATTGTCACTGAAATTTGTCCACCTGACAAGTATAAAAGG
ATTTTAGTTCCAGGAAATGGCAATTCTTCACTCTGCGCTGAGCTTGTTGA
AGATTATCCGAAAAGTCAAATTATTGGTGAAGATTTCTCACCGTCTGTTA
TCCAATATATGTCAGAAAAATACAATGAGATATCAAATTTATCTTGGTTT
GTTGGTGATATAAGAGATATCCAACTGCATGGAGCTTCGAACACAGAAAA
TCTTTTGTATGACATGATCATTGAAAAAGGAGTAATAGACGCTCTAGTGG
CTGGTTCAAAATCACCTTATGCTTCATATTTAGATCCTCAATGTCTAATA
GATGTCGAACAGACTCTATTGTCGATTCGTAAATCACTTCATCGAGAGGG
TCGATTTCTATCGATAAGTTTTGCATCACCAATGATTCGATTACCCTTAT
TATCTGGTGTTTTTGAGATTTTGGTTCATAGTTACATAAGTGAGATGAGT
GGCTTTGAGTATTATGTGTATGAATGTATAAATTCAATCTGTGACAATGA
TGTGGATTTTCGTAAAAATATGGAAAACGAAATTTTGAATTCTGATCCAG
TTGATTTGCCAGAGACTGATCCTTTGGCTATTGGAGATGTATTTGCTTAA
TCAAACAATAAAACAATGATGGAGGCCAGTGATAGAGTTGATCGTCAAAA
ATATCGAACACAAGAATACTGGGAAGAAAGATTTCAGCATGAGTCACAAG
TGAATGAAGATAATGAAAATTCAAATGGAGCACATGAATGGTTTTCTACC
TATCATTCTTTTAGCCATATTGTCACTGAAATTTGTCCACCTGACAAGTA
TAAAAGGATTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045025XLOC_045025Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072553-proteinTCONS_00072553-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072553-exon-scaffold_8-1575043694:72754..72969TCONS_00072553-exon-scaffold_8-1575043694:72754..72969Clytia hemisphaericaexon
TCONS_00072553-exon-scaffold_8-1575043694:71926..72576TCONS_00072553-exon-scaffold_8-1575043694:71926..72576Clytia hemisphaericaexon
TCONS_00072553-exon-scaffold_8-1575043694:71641..71767TCONS_00072553-exon-scaffold_8-1575043694:71641..71767Clytia hemisphaericaexon
TCONS_00072553-exon-scaffold_8-1575043694:68870..68897TCONS_00072553-exon-scaffold_8-1575043694:68870..68897Clytia hemisphaericaexon
TCONS_00072553-exon-scaffold_8-1510915933:72754..72969TCONS_00072553-exon-scaffold_8-1510915933:72754..72969Clytia hemisphaericaexon
TCONS_00072553-exon-scaffold_8-1510915933:71926..72576TCONS_00072553-exon-scaffold_8-1510915933:71926..72576Clytia hemisphaericaexon
TCONS_00072553-exon-scaffold_8-1510915933:71641..71767TCONS_00072553-exon-scaffold_8-1510915933:71641..71767Clytia hemisphaericaexon
TCONS_00072553-exon-scaffold_8-1510915933:68870..68897TCONS_00072553-exon-scaffold_8-1510915933:68870..68897Clytia hemisphaericaexon
TCONS_00072553-exon-scaffold_8-1491911889:72754..72969TCONS_00072553-exon-scaffold_8-1491911889:72754..72969Clytia hemisphaericaexon
TCONS_00072553-exon-scaffold_8-1491911889:71926..72576TCONS_00072553-exon-scaffold_8-1491911889:71926..72576Clytia hemisphaericaexon
TCONS_00072553-exon-scaffold_8-1491911889:71641..71767TCONS_00072553-exon-scaffold_8-1491911889:71641..71767Clytia hemisphaericaexon
TCONS_00072553-exon-scaffold_8-1491911889:68870..68897TCONS_00072553-exon-scaffold_8-1491911889:68870..68897Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:68870..72969 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.59331	1.89712	2.05682	2.60922	1.89296	1.52054	0.406595	0	0.123149	0.409943	0.574746	0.0135205	0.0647954	0	0.030543	0.0890536	0.236932	0.142118	0.371106	0	0.300249	0.192397	0.562018	0.48663	0.297461	0.344728	0.0598364	0.191577	0.393112	0.647256
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR025714Methyltranfer_dom
IPR029063SAM-dependent_MTases
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072553 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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