TCONS_00072512 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072512
Unique NameTCONS_00072512
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1169

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072512 ID=TCONS_00072512|Name=TCONS_00072512|organism=Clytia hemisphaerica|type=transcript|length=1169bp
CGATGCTAGACTATCACGCCTCATTTACACACACGGTGTGGCGTTGACCC
ACCCGCCCACAAAACTCGGCTGCCGGCATCCGATGGTCTTTTTAATGGCC
GACTTGCTCTAAAGCTGACTGCAAGTGAACTCTAAaatggCTCCTCGAAA
AGGGAAGGTACAGAAAGAAGTAGAGGTCGTCTCACTCGGTCCTCAGGTTG
CTGAAGGTGAAAATGTCTTTGGTGTTGCCCACATTTTTGCATCATTCAAT
GACACATTTGTTCACATCACTGATTTATCTGGAAAGGAAACCATCTCCCG
AATCACTGGAGGAATGAAAGTTAAGGCTGACAGAGATGAATCTTCTCCCT
ATGCCGCTATGTTGGCTGCCCAAGATGTTGCTGTTCGATGCAAGGAAATT
GGTATCACTGCCTTACACGTCAAATTGAGAGCCACTGGTGGTAACAGAAC
CAAAACACCTGGACCTGGTGCTCAATCTGCATTAAGGGCTTTGGCTCGTT
CTGGAATGAAAATTGGTCGTATTGAGGATGTCACACCAATCCCATCCGAT
TGCACAAGAAGGAAGGGAGGTCGTCGTGGAAGACGTCTGTAAATCTACCT
TTTCCAGTAAATAAATTGTACCAAAATCCCAAATCTTCGCCTTTGTTCAT
ACCATTCTATGTTTAATATTCCATTTATAGACCATGGCCAGGGGATTGCT
AAAGTTTCGAAAATCTggtagaaaaattcaaaatgtcggtGAAAAGGCTT
TAACCCTTGATTttagtcaatttgagggtgctgatagaccttttcataaa
ttacgtcacgaacatcacttgcctcgtattcaaaaaATGACCATGGTGAT
TATATCTTGTAAcatcaaagatttattatacactggataaacgactcata
aaacgatggagagcgatcattgtatttcctttgtttcagaaaacaattga
tgttctagctttgtccgcaaaggacaactgtcatggcggctcgaagatgt
ctgattttaaaaatgtttatctgtcttatttttaaaaagttctctagctc
tttctttttgaacATTTGCCGAAAAAagagtttgaaagtaaggctagtat
TCCAAGCcagatacatttgtgaaatctaatgtgagaaaaacatctttAGA
CAAGAAATCCAGCCAAAAt
Run BLAST on NCBI

protein sequence of TCONS_00072512-protein

>TCONS_00072512-protein ID=TCONS_00072512-protein|Name=TCONS_00072512-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
MAPRKGKVQKEVEVVSLGPQVAEGENVFGVAHIFASFNDTFVHITDLSGK
ETISRITGGMKVKADRDESSPYAAMLAAQDVAVRCKEIGITALHVKLRAT
GGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDCTRRKGGRRGRR
L
Run BLAST on NCBI

transcript from alignment at scaffold_78:295315..301678-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072512 ID=TCONS_00072512|Name=TCONS_00072512|organism=Clytia hemisphaerica|type=transcript|length=6364bp|location=Sequence derived from alignment at scaffold_78:295315..301678- (Clytia hemisphaerica)
CGATGCTAGACTATCACGCCTCATTTACACACACGGTGTGGCGTTGACCC
ACCCGCCCACAAAACTCGGCTGCCGGCATCCGATGGTCTTTTTAATGGCC
GACTTGCTCTAAAGCTGACTGCAAGTGAACTCTAAGTAAGTTGGCCAATC
TTATCCTCTATTATCTGAATATATATTTACCTAAATCTCGTTTTGATCAA
CCTAGTATCAATGCGATCTGTTATTTAAACGTATTTCCTATTTATTTTTT
TCAGAATGGCTCCTCGAAAAGGGAAGGTACAGAAAGAAGTAGAGGTCGTC
TCACTCGGTCCTCAGGTAAATGTAATAGCCCTGTATTTCTATGCTCGGCA
TATTCTTACTCGTGTAAGACAATCACTCAGCTTCGATGATCTTCTTTACT
TTTACAGGTTGCTGAAGGTGAAAATGTCTTTGGTGTTGCCCACATTTTTG
CATCATTCAATGACACATTTGTTCACATCACTGATTTATCTGGAAAGTAA
GTTCATTACACCTTTCACCGCGTATATTATTTTTTCAGACAGTTTTGTGT
TATAGTTTGAACAATCTATATTGGTTGCTTGAAAAGGTTTATTGTGGAAC
TTATTTGTGGAGGTAACGAAAACGACGATGGTCGATGGGTTCGATATATA
ATCATATTATAATCATGGATATGAAATGATGAATCTCTTGATGTCTCCTG
GTATGTTACATGGTATTGATATTTATTGTATACTGTTATATTGGATTTGA
ATGCTAATACATACGTTTCTTGGAAACTTGTATTGATTTGGTTGCATAAA
ATCTCCATATATTGAATAAAAACAGTGTACTGGATTTTTTGAAAAATATC
AAGTTTAGATTGGAACCTGATTTTATCCACATCATTGAAAGCTGGGCTTG
TGTTTATTTGGGATTTGTAATTTCTATATTTCGAGACAATAAACAATTTG
TTTGGAATGGTTTGCTAGTTTATTTACTTTTCATGATGGACCATGACATA
GGCGGTGGTTACACGTAGCCGTGGTGAAATTCGTGAAAACCCTTTTTCTC
AATCCGGGGTGAAAATTTTAAATCACCCCGGCGTGAAAACCTAATAATGC
ATAACTTTTAGATTTTATCAGTACACAACATCAAGTAGTGTTGAAAAACT
CTTTCGTCTCTCACACGCGAGCAGGAAAGATAGCTCCTCTTGATAGAAAA
AGCTTATTGATGTTAATTTCTAGTATCACTACAATATTATCGCTTAGCCT
TCTGCCAATGCAAATTCATTCAGTTTTAATTGTAAAACTGTTGGCCCAAA
AACGAGAGTTTGAGAGATTGCAGATGGAGGCTATTCTTTCAAACAACATT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNACAACTTTCAGGATTGCAAAATAAAACAAAAACAGACGCACA
TTTTTTTTTCAACCCGGGGTGAAAAAGAAATTGTGTATACATGTAAAAAT
CTGCAAAAATTTGCCAAAAAAATCCTCAAAAAAATTTTCACTCCGGTCCT
CAGGACCGGGGTGAAATCAACCCCGGGGTGAGTTCAACCCGCCTAAAAAC
GATTTGACCCCGCCTAAATACGTGTATACAGAAACAGTGTTTTCTTTATA
GACCGTAGTGAATTTCACCCCAGGGTGAAATCTTTTTTTATTTCACCCCG
GCTACGTGTGACCACTGCCTTAGATAACTAAAAGCACTGGATGTAAAATA
TCTGATGTTGTATGTGAGAACTTTTCACCTCAGGACAATCCAAATACTGA
AAGTAAACAGTGAAGTCAGGTAATTTGCACAGCCATCGATCAAAACAGCA
AAATGAAAAAGCATGAACTATGTAGCCCCGCTCGCAGTTCTACTCTAACT
ATTTTTATTATGATTTAATTTGTATTTTAATGACCAGACGGGTCATTCAT
TGAGGGCTATGCATCTTTGCCTCCACTGGTGCAAGTTACCGGATCTCACA
GTGTTGTGTACAAGTATTATTGGGCTGTGGTCTTAAATAACTTGCATTTG
CACTGGTTTAGATCATTTTTCGGGTCCCAACAGTGAGTCGGTCCGTTCGC
AATTGGAATTCGTAGCTCAGAAATGGGTCACTACACCCCTCCACTCTCCA
CACTAGGTTCTACCCCCTCACTAAATTTGATGGAACCGCCCTCTAGTTGC
AATGGCCCTTCTAAAAAATGGTGAAAATAGAATGTAAGTAAGGCGGTTAT
CAAAAAAATGCTCTGTTGGCATTGCAACGGGTGTTAGAAATGCATGCGGG
CGGTCAAAAACATTCCCGGGTTTTTTAATCATGCCAGTAACTCGGGGGCG
GGTGGTAACGCGAGAAAAACAATTTTTCGATGGTCTTCAGAGCAATTGAG
AAAAAAGCTATACTTTAAAAGAACAAATTGCTTTTCCCAGATTTTTTTCC
GCATCTCCGCACCGGAAAATCAGCTGACAATTTGATGCGGGCAGGTGACG
CGAATAGAACAATTTTTCGATGACCGCCTCAGAACATTTTTAGGTGAAAA
AAAGGGTAAGGTTTTCAAAAATCACATTCGCTAATTTTAGTTCTTTCACT
TTTTAGCTTATTTAGCATGGGAATGTCCCAATAAAGTTTCCATTTCTGCC
AAAATGGATTTTCTTTTCATTTGAAATAATAATTCATAAATGAAATGATA
TGAAATCTAAATAGCATTTCTGCTATTTTTCTCACAGCGACAGCCCCCCT
GCAAATTTTTCCCATAAAAGGAAGAGACTGGATGTAGACCACTTTTTTTG
GGGAGCTAAAATCTCATCACTTAACGTGGGGGCTAAAATAATTCAGCTTA
ATAGTTGAAACTGAGACTGAAAAATTTTTGTCTGCGGCACAATATTTTTA
CAAAAAGTGTTCAAAATATTTGAAACTAACTTAAACCATAGAGGTATAAA
GAAAAACAGGAGTTGAATGTGTCGGTAATTGGTCGTTAAAGTCTTTTGAT
TTCTTTTATAAAATGTATCAAAAGAAATTCTAAGCTCGCCCGATGAAATA
AGACTTTTTAGTAGAACTCAAGTTTGCTATGAACATTCTAATAATCAGTA
TTGAAGATTATGGCCTTTTAATATACGAAAATTAGATAAAAATTCGTCCA
CGAAGCAAGTTTATGTTCCATTTCGCTATCCGTTCAATTTTGTTTTGAAA
AGATATTTTCTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTATATGAGATTATGAGCATGCATACATCGTAACTTTTTTAATCGTA
GGGCGAGCTTGGTTACAATAGCATACTTCTCCTGTTTCTTTATACCTCCA
TGCTTAAACATAGAACTGGATGCAATTTACATTGAAAAACCCTTTTACTT
GGATTGATATTTTGAAAGTGTCTTCTAGGGTCGAAAGTCTTCAGGGGTAA
CAAAAAATTCATAAATCTTTGGGGGGACTTAAAACTCAGAGGGAACCTAA
TCTTTGCCTGGGACCTAAACCCAGGCTGACAATATGTTTTCTCATACCAG
CATGAGATTGGAAAGGCTTCGTTCTAGAGTTATACAAAAAATATTGTGCT
TAATTATAAAACTGTAACTTTCTGAAGGACAGTTTTCAACAACTTCCAGA
AAGTGGCAGTGAAATCTTAGCATGGGAATCTTATGCAAAACAATGGTAGT
TAGGAAATTTCAAAGCATAAATGTCCTGGATTAAGATAGTTTTGCTTCTG
TTATGCTATACAACTTTGAAATTTCAATTTTTCTCGAGAAGAGCTATGTT
AATTTGGTAGTCTTTTCCTCATTTGGAAAGATTTCTTTCCTAATTGCAAA
AATTCCTGACCAAGCAGAACTGCAAAAGTTTGACTACACTAAATTTACAT
GTTGAAATCAAAAGAAATATATTAGTCTGTGTTGCTATCTGGTTTGGTCT
GCTCCCGTTTTGAGAAGCTCTGCAACTTTACAATTCATAACCTGTACTGG
AATTTATAAAATTCTCAAATGGTACAAGTTTTAATTCTGATCAATATTTT
TTCACAGGGAAACCATCTCCCGAATCACTGGAGGAATGAAAGTTAAGGCT
GACAGAGATGAATCTTCTCCCTATGCCGCTATGTTGGCTGCCCAAGATGT
TGCTGTTCGATGCAAGGAAATTGGTATCACTGCCTTACACGTCAAATTGA
GAGCCACTGGTGGTAACAGAACCAAAACACCTGGACCTGGTGCTCAATCT
GCATTAAGGGCTTTGGCTCGTTCTGGAATGAAAATTGGTCGTATTGGTAT
GTATTATTTACTCCAAAAGTCCTGACGCTTCATGTACGGTTCAAATGCCC
AAGTTAAAATTTATTCCTCCATCCTTCATAATCTCTATTGCTTCAGACTT
AAATTTGATTTCATGCATTTTGGGCTTTTGTTACTGATTTTTTGGGGAAA
ATATTGCTCTGATTTTCTGAAAATGAATTTTTTGAAAACTACCTTGATTT
CATGCATTTTGCAAAAAGAGGCCAACCAAATTCAGATTGCATTTTGATTA
AGTTAAATAATTTACGTATTGAAATTCCAAATCCTTGCTTCTTTTTTGGG
GGGGGGTGGGGCTTTCTGGAAAGCTGAAAATATCTTCTTAAAAAGCTTTT
TATGGAATTTAGGTAAAAATGAAATATGCCATGTTGTAGAAAAAAACCCT
GACCTTAACTGCGTTAAAGATAGGGCCTAAGGAATGGTGTTCCTAACTTT
GGTAGTGAACAACCAAAATAGATTTTTCTTAATTTGCTCTTAATAAACTT
TTCATTCATTCATTTTCAGAGGATGTCACACCAATCCCATCCGATTGCAC
AAGAAGGAAGGGAGGTCGTCGTGGAAGACGTCTGTAAATCTACCTTTTCC
AGTAAATAAATTGTACCAAAATCCCAAATCTTCGCCTTTGTTCATACCAT
TCTATGTTTAATATTCCATTTATAGACCATGGCCAGGGGATTGCTAAAGT
TTCGAAAATCTGGTAGAAAAATTCAAAATGTCGGTGAAAAGGCTTTAACC
CTTGATTTTAGTCAATTTGAGGGTGCTGATAGACCTTTTCATAAATTACG
TCACGAACATCACTTGCCTCGTATTCAAAAAATGACCATGGTGATTATAT
CTTGTAACATCAAAGATTTATTATACACTGGATAAACGACTCATAAAACG
ATGGAGAGCGATCATTGTATTTCCTTTGTTTCAGAAAACAATTGATGTTC
TAGCTTTGTCCGCAAAGGACAACTGTCATGGCGGCTCGAAGATGTCTGAT
TTTAAAAATGTTTATCTGTCTTATTTTTAAAAAGTTCTCTAGCTCTTTCT
TTTTGAACATTTGCCGAAAAAAGAGTTTGAAAGTAAGGCTAGTATTCCAA
GCCAGATACATTTGTGAAATCTAATGTGAGAAAAACATCTTTAGACAAGA
AATCCAGCCAAAAT

Coding sequence (CDS) from alignment at scaffold_78:295315..301678-

>TCONS_00072512 ID=TCONS_00072512|Name=TCONS_00072512|organism=Clytia hemisphaerica|type=CDS|length=1824bp|location=Sequence derived from alignment at scaffold_78:295315..301678- (Clytia hemisphaerica)
AGGATGTCACACCAATCCCATCCGATTGCACAAGAAGGAAGGGAGGTCGT
CGTGGAAGACGTCTGTAAGGAAACCATCTCCCGAATCACTGGAGGAATGA
AAGTTAAGGCTGACAGAGATGAATCTTCTCCCTATGCCGCTATGTTGGCT
GCCCAAGATGTTGCTGTTCGATGCAAGGAAATTGGTATCACTGCCTTACA
CGTCAAATTGAGAGCCACTGGTGGTAACAGAACCAAAACACCTGGACCTG
GTGCTCAATCTGCATTAAGGGCTTTGGCTCGTTCTGGAATGAAAATTGGT
CGTATTGGTTGCTGAAGGTGAAAATGTCTTTGGTGTTGCCCACATTTTTG
CATCATTCAATGACACATTTGTTCACATCACTGATTTATCTGGAAAATGG
CTCCTCGAAAAGGGAAGGTACAGAAAGAAGTAGAGGTCGTCTCACTCGGT
CCTCAGAGGATGTCACACCAATCCCATCCGATTGCACAAGAAGGAAGGGA
GGTCGTCGTGGAAGACGTCTGTAAGGAAACCATCTCCCGAATCACTGGAG
GAATGAAAGTTAAGGCTGACAGAGATGAATCTTCTCCCTATGCCGCTATG
TTGGCTGCCCAAGATGTTGCTGTTCGATGCAAGGAAATTGGTATCACTGC
CTTACACGTCAAATTGAGAGCCACTGGTGGTAACAGAACCAAAACACCTG
GACCTGGTGCTCAATCTGCATTAAGGGCTTTGGCTCGTTCTGGAATGAAA
ATTGGTCGTATTGGTTGCTGAAGGTGAAAATGTCTTTGGTGTTGCCCACA
TTTTTGCATCATTCAATGACACATTTGTTCACATCACTGATTTATCTGGA
AAATGGCTCCTCGAAAAGGGAAGGTACAGAAAGAAGTAGAGGTCGTCTCA
CTCGGTCCTCAGAGGATGTCACACCAATCCCATCCGATTGCACAAGAAGG
AAGGGAGGTCGTCGTGGAAGACGTCTGTAAGGAAACCATCTCCCGAATCA
CTGGAGGAATGAAAGTTAAGGCTGACAGAGATGAATCTTCTCCCTATGCC
GCTATGTTGGCTGCCCAAGATGTTGCTGTTCGATGCAAGGAAATTGGTAT
CACTGCCTTACACGTCAAATTGAGAGCCACTGGTGGTAACAGAACCAAAA
CACCTGGACCTGGTGCTCAATCTGCATTAAGGGCTTTGGCTCGTTCTGGA
ATGAAAATTGGTCGTATTGGTTGCTGAAGGTGAAAATGTCTTTGGTGTTG
CCCACATTTTTGCATCATTCAATGACACATTTGTTCACATCACTGATTTA
TCTGGAAAATGGCTCCTCGAAAAGGGAAGGTACAGAAAGAAGTAGAGGTC
GTCTCACTCGGTCCTCAGAGGATGTCACACCAATCCCATCCGATTGCACA
AGAAGGAAGGGAGGTCGTCGTGGAAGACGTCTGTAAGGAAACCATCTCCC
GAATCACTGGAGGAATGAAAGTTAAGGCTGACAGAGATGAATCTTCTCCC
TATGCCGCTATGTTGGCTGCCCAAGATGTTGCTGTTCGATGCAAGGAAAT
TGGTATCACTGCCTTACACGTCAAATTGAGAGCCACTGGTGGTAACAGAA
CCAAAACACCTGGACCTGGTGCTCAATCTGCATTAAGGGCTTTGGCTCGT
TCTGGAATGAAAATTGGTCGTATTGGTTGCTGAAGGTGAAAATGTCTTTG
GTGTTGCCCACATTTTTGCATCATTCAATGACACATTTGTTCACATCACT
GATTTATCTGGAAAATGGCTCCTCGAAAAGGGAAGGTACAGAAAGAAGTA
GAGGTCGTCTCACTCGGTCCTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044994XLOC_044994Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072512-exon-scaffold_78-1575043694:301544..301678TCONS_00072512-exon-scaffold_78-1575043694:301544..301678Clytia hemisphaericaexon
TCONS_00072512-exon-scaffold_78-1575043694:301364..301424TCONS_00072512-exon-scaffold_78-1575043694:301364..301424Clytia hemisphaericaexon
TCONS_00072512-exon-scaffold_78-1575043694:301183..301271TCONS_00072512-exon-scaffold_78-1575043694:301183..301271Clytia hemisphaericaexon
TCONS_00072512-exon-scaffold_78-1575043694:296483..296721TCONS_00072512-exon-scaffold_78-1575043694:296483..296721Clytia hemisphaericaexon
TCONS_00072512-exon-scaffold_78-1575043694:295315..295959TCONS_00072512-exon-scaffold_78-1575043694:295315..295959Clytia hemisphaericaexon
TCONS_00072512-exon-scaffold_78-1510915933:301544..301678TCONS_00072512-exon-scaffold_78-1510915933:301544..301678Clytia hemisphaericaexon
TCONS_00072512-exon-scaffold_78-1510915933:301364..301424TCONS_00072512-exon-scaffold_78-1510915933:301364..301424Clytia hemisphaericaexon
TCONS_00072512-exon-scaffold_78-1510915933:301183..301271TCONS_00072512-exon-scaffold_78-1510915933:301183..301271Clytia hemisphaericaexon
TCONS_00072512-exon-scaffold_78-1510915933:296483..296721TCONS_00072512-exon-scaffold_78-1510915933:296483..296721Clytia hemisphaericaexon
TCONS_00072512-exon-scaffold_78-1510915933:295315..295959TCONS_00072512-exon-scaffold_78-1510915933:295315..295959Clytia hemisphaericaexon
TCONS_00072512-exon-scaffold_78-1491911889:301544..301678TCONS_00072512-exon-scaffold_78-1491911889:301544..301678Clytia hemisphaericaexon
TCONS_00072512-exon-scaffold_78-1491911889:301364..301424TCONS_00072512-exon-scaffold_78-1491911889:301364..301424Clytia hemisphaericaexon
TCONS_00072512-exon-scaffold_78-1491911889:301183..301271TCONS_00072512-exon-scaffold_78-1491911889:301183..301271Clytia hemisphaericaexon
TCONS_00072512-exon-scaffold_78-1491911889:296483..296721TCONS_00072512-exon-scaffold_78-1491911889:296483..296721Clytia hemisphaericaexon
TCONS_00072512-exon-scaffold_78-1491911889:295315..295959TCONS_00072512-exon-scaffold_78-1491911889:295315..295959Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072512-proteinTCONS_00072512-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_78supercontigscaffold_78:295315..301678 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
925.351	916.5	936.035	973.289	544.903	446.839	660.84	731.391	1160.39	1183.9	1372.92	1530.36	1871.25	1933.68	1596.44	1718.77	1831.47	1938.81	919.412	1061.75	1737.73	1780.19	1297.19	1216.57	1080.55	1141.34	1607.33	1703.57	1084.65	1111.71
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001971Ribosomal_S11
IPR018102Ribosomal_S11_CS
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Blast
[Close]
BLAST of TCONS_00072512 vs. Swiss-Prot (Human)
Match: RS14 (40S ribosomal protein S14 OS=Homo sapiens GN=RPS14 PE=1 SV=3)

HSP 1 Score: 265.388 bits (677), Expect = 1.807e-87
Identity = 127/140 (90.71%), Postives = 134/140 (95.71%), Query Frame = 2 
Query:  137 MAPRKGKVQKEVEVVSLGPQVAEGENVFGVAHIFASFNDTFVHITDLSGKETISRITGGMKVKADRDESSPYAAMLAAQDVAVRCKEIGITALHVKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDCT 556
            MAPRKGK +KE +V+SLGPQVAEGENVFGV HIFASFNDTFVH+TDLSGKETI R+TGGMKVKADRDESSPYAAMLAAQDVA RCKE+GITALH+KLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSD T
Sbjct:    1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST 140
The following BLAST results are available for this feature:
BLAST of TCONS_00072512 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RS141.807e-8790.7140S ribosomal protein S14 OS=Homo sapiens GN=RPS14... [more]
back to top