TCONS_00072512-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00072512-protein
Unique NameTCONS_00072512-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length151

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00072512-protein ID=TCONS_00072512-protein|Name=TCONS_00072512-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
MAPRKGKVQKEVEVVSLGPQVAEGENVFGVAHIFASFNDTFVHITDLSGK
ETISRITGGMKVKADRDESSPYAAMLAAQDVAVRCKEIGITALHVKLRAT
GGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDCTRRKGGRRGRR
L
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044994XLOC_044994Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00072512TCONS_00072512Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001971Ribosomal_S11
IPR018102Ribosomal_S11_CS
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001971Ribosomal protein S11PFAMPF00411Ribosomal_S11coord: 29..147
e-value: 9.6E-47
score: 157.8
IPR001971Ribosomal protein S11PIRSFPIRSF002131RPS11p_RPS11a_RPS14e_RPS11ocoord: 2..148
e-value: 4.9E-36
score: 121.5
IPR001971Ribosomal protein S11GENE3D3.30.420.80coord: 18..150
e-value: 1.3E-49
score: 167.0
IPR001971Ribosomal protein S11HAMAPMF_01310Ribosomal_S11coord: 4..148
score: 20.927
IPR018102Ribosomal S11, conserved sitePROSITEPS00054RIBOSOMAL_S11coord: 116..138
NoneNo IPR availableSUPERFAMILY53137Translational machinery componentscoord: 24..149

Blast
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BLAST of TCONS_00072512-protein vs. Swiss-Prot (Human)
Match: RS14 (40S ribosomal protein S14 OS=Homo sapiens GN=RPS14 PE=1 SV=3)

HSP 1 Score: 264.618 bits (675), Expect = 1.647e-92
Identity = 127/140 (90.71%), Postives = 134/140 (95.71%), Query Frame = 0 
Query:    1 MAPRKGKVQKEVEVVSLGPQVAEGENVFGVAHIFASFNDTFVHITDLSGKETISRITGGMKVKADRDESSPYAAMLAAQDVAVRCKEIGITALHVKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDCT 140
            MAPRKGK +KE +V+SLGPQVAEGENVFGV HIFASFNDTFVH+TDLSGKETI R+TGGMKVKADRDESSPYAAMLAAQDVA RCKE+GITALH+KLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSD T
Sbjct:    1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST 140
The following BLAST results are available for this feature:
BLAST of TCONS_00072512-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RS141.647e-9290.7140S ribosomal protein S14 OS=Homo sapiens GN=RPS14... [more]
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