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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072511 ID=TCONS_00072511|Name=TCONS_00072511|organism=Clytia hemisphaerica|type=transcript|length=3562bpRun BLAST on NCBI protein sequence of TCONS_00072511-protein >TCONS_00072511-protein ID=TCONS_00072511-protein|Name=TCONS_00072511-protein|organism=Clytia hemisphaerica|type=polypeptide|length=949bp MENLVKALQLAASQNIQEVKAAEEQLKQWETTAGFYPKLLEIFAMRHLEVRun BLAST on NCBI transcript from alignment at scaffold_78:240027..272336- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072511 ID=TCONS_00072511|Name=TCONS_00072511|organism=Clytia hemisphaerica|type=transcript|length=32310bp|location=Sequence derived from alignment at scaffold_78:240027..272336- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_78:240027..272336- >TCONS_00072511 ID=TCONS_00072511|Name=TCONS_00072511|organism=Clytia hemisphaerica|type=CDS|length=39900bp|location=Sequence derived from alignment at scaffold_78:240027..272336- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00072511 vs. Swiss-Prot (Human)
Match: IPO11 (Importin-11 OS=Homo sapiens GN=IPO11 PE=1 SV=1) HSP 1 Score: 513.072 bits (1320), Expect = 1.525e-162 Identity = 316/967 (32.68%), Postives = 532/967 (55.02%), Query Frame = 3
Query: 216 LVKALQLAASQNIQEVKAAEEQLKQWETTAGFYPKLLEIFAMRHLEVNIRWIAIICLKNGIDKYWRRVVKNCLPDDEKNFIKQNIMI-FDEVTPELALQLSVVIGRIARNDI-KIWPQCLEVTIEAIKSTNSINQHRGLLTLKQIVKELASKRLASDRRVFHEISSKIFEFLVELCYSSVGRL--------QAGSIQEVDLCLLVTKVLRRLLIYGGKLYDENTPQIRYVKWCVTQVPVFVEL-RNKNTEK--RPKLHKYVLLLMKILTEFEEHQSGSMLPILHDMLQLCLHYILSNRNDCQEDSMLVIYCGNLLRSASRTFT-----KLIEPNPCT----DVLLNTITVDNLKSLAYYVVMNYLPLTQTERDEWEHDPEAY-VNTEAGESHKFLLRPCMETFYVGLFYGFKEHMVPFVVQLVKEASENFNLESITHEDLLKLCAIYKAVGLSSYELFGEIDFDAWFTGHLLNVFNLPSDRYAILQQHVIWMVGEWIDVKLSKPNRIHLYRLLSVILESEHADLVLKLTACKTLRIAXXXXXXXXXXXXXXVENVFPALCSLLIRVEECDTKMMVLNVISLTIQRSGNEVHRHAQMLIQYLPQLWELSDSHNLLRGAVVNLLHHLVKGLAGESSKINHITIPVLNHSTDVNQPAHIYLLEDGLELWQAVISNAPTLNPDLLTLYGNLFALLERASETLESCLAITRSYILIDCQTFPQEYGVKLSQCFHELAQNMKETGTLSIVAVFKVISQVQPSAFFNSFQVSILDIFDASLKDENYPILMSQYFTILAYLVVSQPESLFQVGRSYCELNASIGSSYEELMGRLFDVWFEKMDCMSL-EDKKVSAIAFASLLPLKISFIGERFALMLDSCVNVLYELQRGDGEDEQPSQDSLVIDWANES--IDPNEPQSYESIREKKMMSQDCVYNFHLLPYLKEKLQQTKSAYGEQLFNEAMSTLDSAVAKQL 3038
+++ L A SQ+ +K AEEQLKQWET GFY LL IF L++N+RW+A++ K+GID+YWRRV + L ++EK ++ ++ F+E ++A Q++V+I ++AR D + WP+ + IE++K + + QHR LLT + K LASKRLA+DR++F++++S I+ F L +A + ++ LL KVLR+L + G +N + ++ ++ F+E R+ T+ R +L K ++L K+L +F + S P++ L+ + Y+ + + ++ C NL++ + + + +P T + + T L + +V +Y LT+ E WE DPE + V G+S K+ LRPC E ++ +F+ + + + P ++++++ N+E + LL A+Y AVGL++YELF +DFD WF LL + +RY L++ VIW++G+WI VK R LY + +L+ + DLV+++ TL++ +DDF+F + FL ++E +F L LL +V ECDTKM VL+V+S I+R ++ + L+QYLP LW+ S+ HN+LR A++ L HLV+GL +S + +PV+ STDV+QP H+YLLEDGLELW + N+P + P+LL ++ N+ LLE +SE L +C I YI + F Q Y V L Q F EL + + G + ++ V + +V P FQ + +F ++ E YP++MS Y ++ V+ Q S F E+ ++L+G + ++W ++MD ++ E +K+SA+A SLLP S I ++F +++ V L+++ D E +D +++ E + EP + + R+K + +D V+ L ++ EKL+ + GEQ F M T+D+ + QL
Sbjct: 10 VLQVLTQATSQDTAVLKPAEEQLKQWETQPGFYSVLLNIFTNHTLDINVRWLAVLYFKHGIDRYWRRVAPHALSEEEKTTLRAGLITNFNEPINQIATQIAVLIAKVARLDCPRQWPELIPTLIESVKVQDDLRQHRALLTFYHVTKTLASKRLAADRKLFYDLASGIYNFACSLWNHHTDTFLQEVSSGNEAAILSSLERTLLSLKVLRKLTVNGFVEPHKNMEVMGFLHGIFERLKQFLECSRSIGTDNVCRDRLEKTIILFTKVLLDFLDQHPFSFTPLIQRSLEFSVSYVFTEVGEGVTFERFIVQCMNLIKMIVKNYAYKPSKNFEDSSPETLEAHKIKMAFFTYPTLTEICRRLVSHYFLLTEEELTMWEEDPEGFTVEETGGDSWKYSLRPCTEVLFIDIFHEYNQTLTPVLLEMMQTLQGPTNVEDMNA--LLIKDAVYNAVGLAAYELFDSVDFDQWFKNQLLPELQVIHNRYKPLRRRVIWLIGQWISVKFKSDLRPMLYEAICNLLQDQ--DLVVRIETATTLKLTVDDFEFRTDQFLPYLETMFTLLFQLLQQVTECDTKMHVLHVLSCVIERVNMQIRPYVGCLVQYLPLLWKQSEEHNMLRCAILTTLIHLVQGLGADSKNLYPFLLPVIQLSTDVSQPPHVYLLEDGLELWLVTLENSPCITPELLRIFQNMSPLLELSSENLRTCFKIINGYIFLSSTEFLQTYAVGLCQSFCELLKEITTEGQVQVLKVVENALKVNPILGPQMFQPILPYVFKGIIEGERYPVVMSTYLGVMGR-VLLQNTSFF--SSLLNEMAHKFNQEMDQLLGNMIEMWVDRMDNITQPERRKLSALALLSLLPSDNSVIQDKFCGIINISVEGLHDVMTEDPETGT-YKDCMLMSHLEEPKVTEDEEPPTEQDKRKKMLALKDPVHTVSLQQFIYEKLKAQQEMLGEQGFQSLMETVDTEIVTQL 968 The following BLAST results are available for this feature:
BLAST of TCONS_00072511 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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