TCONS_00072368 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072368
Unique NameTCONS_00072368
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1863

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072368 ID=TCONS_00072368|Name=TCONS_00072368|organism=Clytia hemisphaerica|type=transcript|length=1863bp
aaggtttgaaTAACTAAGAATAATTAATAACTTTCTTCcattttcacatt
cattttgtttatcaggtgaaataaaaaataaacgtagtagatcataaaat
aaaaatgtacaatCAAAGTGCAGTGTCAATAAAGTCCAGTGCTTCACTGC
TGTACAATAATCTAGATGTCCTTTCATCTGCATCTGGTCTTCAGTATGCA
GTTGTTCACAAATCCAACGTTTGGGTGTTTGATGCAGAAGAAATACAGAC
CAACCAAGCTGCATACAGAAGGGTTGTTTGTAAAGGAGAAGGCACACAAA
CAAGCTCCACCATCATGCAGGCCAAATGGTGTGTTTTACCACAGAGGACT
CTTCTTGTTGTTGGTTCAGTCAAAGGTGCACAGATGTTTGATGAGAATGG
GTCAATGATGATTTTCTGGCAAGCCTTACAGCCACATCCTAAAGAAGGGA
AACCACAGTTCGTCAGAGGAATTACTGCAGCTGGTGATAATCGAATATGT
ATTGgaACTGCGGATGGGAGTATTTATGTCTTCGATATTCCCTCAAAAGG
AAATGGTGTTAAACTACACGACACTATCAATGCACACACATGTGCATTGA
CAGATTTACATGCACTGGATGATTGTATGGTTTCAGCAGATGATATGGGC
AAAATCATTTTGTGGAAAGTTGGTGGAGCAGTCACCAAAACGCTCGAAAT
TGAAGGTTTTGGATTTCCATGCACGAGCGTTCGACTGCACGAGAACTTCA
TAATAGCAGCGTACGGTTCTGGACACCTTCGAAAGTTTAACTGCAAGACG
GGAACAATAATCGTTGAAGTTGCAGCGCACGCTAAATGGATTAACGCCAT
GGACCTTTCACAAGACGGAACACTGGTGGTGACAGCCTCAGAAGACACCT
TCCTTAGACTTTTCGACGTCGAGACGTTCGAACTGAAGTTTCAGAAAGCG
ATCACAGACGTTCAATTGACAGGTGTTCGTTTCATGGATGCGATCGACAA
CAGTTTCGGTGTCACCGGTTATGATTCTTCCGAAATCACCATCTTCAAAC
CTGCTAAATAGACCGCAAGCTCTTGTGTTTTATTGTGCTTCTCACTTAAA
CAAATACTTCATCGAGTGCCATGACggttttcattttgcttttaatAAAT
CcgagatgaaaaaatttaatgtttatGAGTACGGAAAAGTAAGCAAAAGG
AAAGGAAAAGTTTGCTCTCACAAAATGTGAACTGATTGTCATACTCTGCA
ATTTACTGTTTGAGTTTTTCCTCTGGCTTTTTCTGATTAGGAAATCAAAC
GATTTTGATAACGTTTACATGTTTAGGTCGAGATACCTTTCAGCAGAAAT
TCATCCGAAACAAAACTGTAATTTATTATAATAATTGACTTAATTATTTA
GTgtagaaaaacaattttaaaattaattttgccTGATACATTGTGTGAGG
GAAAAGTGGAACTAAATTTATTTTAAGATTTCAAACCCTTGCAATCtaca
aaagttttaaaatgattaatttaatttaacACGCACAATTAGAGGTGTTT
AATGCTCGAAATTTCGTTCCAATTTTCTTCCTGACACGCTGTATTCGGCG
AatagaaatgaaatatttgaatgTTATAAATTATATTAGagaagattttt
taaataatgcaTCAAGAGAGAGACTATGGGAATAACGAATTATTTATGCT
AACGATGCTTGCTTTTTATTATGTGTCATTTGTGTATTATATTTGTCAAT
TTTGAATCAGAAATACATATCAAATATGGTTTTCAAATTAAAGATCACTC
CTTTTTCGTTTTTACAGGTAAATTTTATAACTAATTTTCTTGTATGAAAT
GTTTTTGATTACC
Run BLAST on NCBI

protein sequence of TCONS_00072368-protein

>TCONS_00072368-protein ID=TCONS_00072368-protein|Name=TCONS_00072368-protein|organism=Clytia hemisphaerica|type=polypeptide|length=318bp
MYNQSAVSIKSSASLLYNNLDVLSSASGLQYAVVHKSNVWVFDAEEIQTN
QAAYRRVVCKGEGTQTSSTIMQAKWCVLPQRTLLVVGSVKGAQMFDENGS
MMIFWQALQPHPKEGKPQFVRGITAAGDNRICIGTADGSIYVFDIPSKGN
GVKLHDTINAHTCALTDLHALDDCMVSADDMGKIILWKVGGAVTKTLEIE
GFGFPCTSVRLHENFIIAAYGSGHLRKFNCKTGTIIVEVAAHAKWINAMD
LSQDGTLVVTASEDTFLRLFDVETFELKFQKAITDVQLTGVRFMDAIDNS
FGVTGYDSSEITIFKPAK
Run BLAST on NCBI

transcript from alignment at scaffold_77:339802..344735+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072368 ID=TCONS_00072368|Name=TCONS_00072368|organism=Clytia hemisphaerica|type=transcript|length=4934bp|location=Sequence derived from alignment at scaffold_77:339802..344735+ (Clytia hemisphaerica)
aaggtttgaaTAACTAAGAATAATTAATAACTTTCTTCcattttcacatt
cattttgtttatcaggtgaaataaaaaataaacgtagtagatcataaaat
aaaaatgtacaatCAAAGTGCAGTGTCAATAAAGTCCAGTGCTTCACTGC
TGTACAATAATCTAGATGTCCTTTCATCTGCATCTGGTCTTCAGTATGCA
GTTGTTCACAAATCCAACGTTTGGGTGTTTGATGCAGAAGAAATACAGAC
CAACCAAGCTGCATACAGAAGGGTTGTTTGTAAAGGAGAAGGCACACAAA
CAAGCTCCACCATCATGCAGGTCAGCAAATTACACAAATGATATAAAAAT
CATGCTTTAATTGATAGATACAGAATGTCTTAGATGGACTTATGATCATA
TTATAAGATCTTTTAAAAGTTCGACGTCCCATTTTTTTTTCAGGCCAAAT
GGTGTGTTTTACCACAGAGGACTCTTCTTGTTGTTGGTTCAGTCAAAGGT
GCACAGGTACTTTCCCTTTGTCCATTTCACATCCTCCTATGTCTCTGTGT
TCATTAGATACCTTTTTGATTATCTTTCTAACATTGAGGGCAATGTTATA
AACTATATTGGCTATCTTAGACAGCTGGAATATCAAGGGAAAAATCTTAA
TTTAGTAATAAAATGGTATTTGGTATTGATATTTTTCCTCTGTTCCCCTA
TTAGTTGATATATAACGTAGCCTCATTTTCTTTAGATGTTTGATGAGAAT
GGGTCAATGATGATTTTCTGGCAAGCCTTACAGCCACATCCTAAAGAAGG
GAAACCACAGTTCGTCAGAGGAATTACTGCAGCTGGTGATAATCGAATAT
GTATTGGTGAGGAGGAATTGTTGATTGAATTTTactttcattgatttcta
aggTCTCAAATTTGCTAATTGAAATTCGATCTTTTTGTCGGATTGCCAAT
TGGGTCGGAGtaatttaaatgaaatttgaaactgAAATAGGTCTATGAAC
CCTGCTCCCTAACTGTGGAATGCTGTCTATCaagcttccattttatttta
ggaACTGCGGATGGGAGTATTTATGTCTTCGATATTCCCTCAAAAGGAAA
TGGTGTTAAACTACACGACACTATCAATGCACACACATGTGCATTGACAG
ATTTACATGCACTGGATGATTGTATGGTTTCAGCAGATGATATGGGCAAA
ATCATTTTGTGGAAAGTTGGTGGAGCAGTCACCAAAACGCTCGAAATTGA
AGGTTTTGGGTAGGCTTTAGTTTTGTTGCTTTGCTGTGTTTTTAATTTTG
AGCTAGTGGCTTGAGTAATGGATACTATTGTATAGCAGTGATTTTATTTG
TGTTCACATGAACACGAAAGGctgattttttttatgttgttaaaggtttt
cttaCGGGAATAAAAGGGGCTTATTTTAGGCAGTGTCTTCATGCTGAGTC
AGATAaattaaagctacttttttaagcaacgatatcctgcaaacaagtga
aagatcgaaagttgtttcgagatgtgacctcacattccattgcttttgta
aacaagaaaatagcaaagttgatttcgagcaaatttTCGTTTTGATCGTT
ACGATCGTAACGTAACGTTAAGATCgttttgattataagatagaaaacgT
TCCACTTATTATGaacacaaaaacattcgaaagagtatcagtaaaagtcc
ctttgtttgaggaatgtttttttaatcaatgtattttcatcttttcaaaa
catttttctaatcttgtcgcacttgtttttactacatcagcGTCATCAga
cttttcaatcaaaacaaaacctttaactgaCGGTAGCTAAGATGTTCCCA
TTATTTATGTCTAGATTTCCATGCACGAGCGTTCGACTGCACGAGAACTT
CATAATAGCAGCGTACGGTTCTGGACACCTTCGAAAGTTTAACTGCAAGA
CGGGAACAATAATCGTTGAAGTTGCAGCGCACGCTAAATGGATTAACGCC
ATGGACCTTTCACAAGACGGAACACTGGTAAGACAATTACTTCTTctttt
gaaacatttataaCAAAGATTTCTCGATAATATATTGAACGATCAAgtgg
aacaataaaaaaaacaaagttccTCACTGATTTGTAGGTGATTCATTTAG
TTTGACACATAGCCTTGTCTGCATCATttgtttttcattaaatttattAT
GATTGAAGAACTTGAGATGGTGCtccgattttttgaaaaataatgtcTAC
ACTATATAACTCTAGATATCTTAAAAATTATATTCTACGGGGCACATTCA
GTAACGTTATTTGAAAGATTTGATCTGATTCTATTCAATTCAACTGCACA
ATCATTATCATTCTGTCGCTTGCAGCATGGTATCTTTCTAAAATACTTTC
TAAAGACAGCATTTGAATATCCATAAATAAAAGCATTGCCAACAATATTC
AGATTAATCAGGGCTGCCAAGAAGGAGTCTATAGATTCGCCTGTGCAGGT
CAAAAATATTTGGGTATCGAAAAGCATATATATTTGATAGATACTGAAGG
GAAGCCAAGTGATAATCACCAAAAACATCATTGTGATGTACATTCGATTT
TCTGTCACCCTCCCACGGAGTGAGCTCTCCCTTTGAGCGTCTCTGCGTCG
CTTTCGAACAGTCTCGAAAATGAAGCCGTACAGCAACATACTTGCGAAAA
GGGGTAGCAGTAAGAAAGCAAGGAGCAATCCTTCAGCCCAATTTGGCATT
AAGAAGTCGTAATACCCAGGCTCTGGATAGTcttgaataaaaaaagcaaa
tatGAAAATAGCAGCCGATAATGCGAATGCCACGAACATAGATTTATTAA
TCAAACTTCTGGTAACTCTCAAATGACGGAGAGGGTACTTCACTGCATAA
AATCGATTCAGTGTTAAGAAAAATAGGATGAATATCGtccaaccaaaaca
aaaataccaaaaagcgTTGACAAAAACAATCCATACAGGAGAAATGAAAT
ATTCTTCCCAATCATATGTGTAATAAGCTGTAGCGTCCAGAGGGAGCTGG
AATGGACACGTCACCAAGTCTGAAACTGCTAACCATAAGATGAACACAAA
ATGATATGACTTCAAAAGTTGTCCCTTTATTATCACAAAACAAATGAAAA
GGTTTCCTGGAATTCCAAATATGGTTATCAAAGTACTGTATAGCCCAAAG
CTCAGGTTTAAATATTTAAGTGATTTGCTTTGCCAGCATGGAGCAAGTTC
ATTATCAATTATCTTGGACGTTGAATTACCTCTGAGCGACTTGTTCATTA
TGTTCTCGATATTTCACTTGTCTCTCCATATATAATCTTTGATTTCAGAA
CGTGATGTTATGAATCATTCTAAGAACTCGTTATAAATCTACAAACTCAT
GTCTAATTACTTTATAccgataaaaacaaacaaacaaaccgTCGAATCTC
TTTATTAATTCTTTAAGATATGAGGTAgaagaataaataaaaagaaagta
gttttaataaaactcactgggagttaatcaccatggcaataatttcaaaa
cgaggcaagtgatgttcgtgacgtaatttatgaaaaggtcaatTAAAACA
GCAATTTAAATCTCAGCTCAATAATCCTCACAAAAATGATGCAGCTCAGG
CTCgttcttcaaaagaaaatatgaGAATTTAACAAATTTTTCTCTTTCCA
ATTTGTTAGGTGGTGACAGCCTCAGAAGACACCTTCCTTAGACTTTTCGA
CGTCGAGACGGTAAGTAAATCTGTTGGACTTAAGTTACGCCTTGTCTAAG
CTCTTACAAGGCGAATGTTTAACCCTTCGATACGTCCTAAGTAATTCAGC
CAAGTTGACTTTAAGAGAAAACCTTTCCAGTTGAAAGAATTAATATCGAA
CAGGCACAGTTGGGTAAAAGTACCAAATTAGTTTGAGTAGGGTTAAGTAA
AAAAAAGcttctttgatttgattttcacCTTTTCTCTCTCCATTTAGTTC
GAACTGAAGTTTCAGAAAGCGATCACAGACGTTCAATTGACAGGTGTTCG
TTTCATGGATGCGATCGACAACAGTTTCGGTGTCACCGGTTATGATTCTT
CCGAAATCACCATCTTCAAACCTGCTAAATAGACCGCAAGCTCTTGTGTT
TTATTGTGCTTCTCACTTAAACAAATACTTCATCGAGTGCCATGACggtt
ttcattttgcttttaatAAATCcgagatgaaaaaatttaatgtttatGAG
TACGGAAAAGTAAGCAAAAGGAAAGGAAAAGTTTGCTCTCACAAAATGTG
AACTGATTGTCATACTCTGCAATTTACTGTTTGAGTTTTTCCTCTGGCTT
TTTCTGATTAGGAAATCAAACGATTTTGATAACGTTTACATGTTTAGGTC
GAGATACCTTTCAGCAGAAATTCATCCGAAACAAAACTGTAATTTATTAT
AATAATTGACTTAATTATTTAGTgtagaaaaacaattttaaaattaattt
tgccTGATACATTGTGTGAGGGAAAAGTGGAACTAAATTTATTTTAAGAT
TTCAAACCCTTGCAATCtacaaaagttttaaaatgattaatttaatttaa
cACGCACAATTAGAGGTGTTTAATGCTCGAAATTTCGTTCCAATTTTCTT
CCTGACACGCTGTATTCGGCGAatagaaatgaaatatttgaatgTTATAA
ATTATATTAGagaagattttttaaataatgcaTCAAGAGAGAGACTATGG
GAATAACGAATTATTTATGCTAACGATGCTTGCTTTTTATTATGTGTCAT
TTGTGTATTATATTTGTCAATTTTGAATCAGAAATACATATCAAATATGG
TTTTCAAATTAAAGATCACTCCTTTTTCGTTTTTACAGGTAAATTTTATA
ACTAATTTTCTTGTATGAAATGTTTTTGATTACC

Coding sequence (CDS) from alignment at scaffold_77:339802..344735+

>TCONS_00072368 ID=TCONS_00072368|Name=TCONS_00072368|organism=Clytia hemisphaerica|type=CDS|length=6699bp|location=Sequence derived from alignment at scaffold_77:339802..344735+ (Clytia hemisphaerica)
atgtacaatCAAAGTGCAGTGTCAATAAAGTCCAGTGCTTCACTGCTGTA
CAATAATCTAGATGTCCTTTCATCTGCATCTGGTCTTCAGTATGCAGTTG
TTCACAAATCCAACGTTTGGGTGTTTGATGCAGAAGAAATACAGACCAAC
CAAGCTGCATACAGAAGGGTTGTTTGTAAAGGAGAAGGCACACAAACAAG
CTCCACCATCATGCAGGCCAAATGGTGTGTTTTACCACAGAGGACTCTTC
TTGTTGTTGGTTCAGTCAAAGGTGCACAGATGTTTGATGAGAATGGGTCA
ATGATGATTTTCTGGCAAGCCTTACAGCCACATCCTAAAGAAGGGAAACC
ACAGTTCGTCAGAGGAATTACTGCAGCTGGTGATAATCGAATATGTATTG
gaACTGCGGATGGGAGTATTTATGTCTTCGATATTCCCTCAAAAGGAAAT
GGTGTTAAACTACACGACACTATCAATGCACACACATGTGCATTGACAGA
TTTACATGCACTGGATGATTGTATGGTTTCAGCAGATGATATGGGCAAAA
TCATTTTGTGGAAAGTTGGTGGAGCAGTCACCAAAACGCTCGAAATTGAA
GGTTTTGGATTTCCATGCACGAGCGTTCGACTGCACGAGAACTTCATAAT
AGCAGCGTACGGTTCTGGACACCTTCGAAAGTTTAACTGCAAGACGGGAA
CAATAATCGTTGAAGTTGCAGCGCACGCTAAATGGATTAACGCCATGGAC
CTTTCACAAGACGGAACACTGGTGGTGACAGCCTCAGAAGACACCTTCCT
TAGACTTTTCGACGTCGAGACGTTCGAACTGAAGTTTCAGAAAGCGATCA
CAGACGTTCAATTGACAGGTGTTCGTTTCATGGATGCGATCGACAACAGT
TTCGGTGTCACCGGTTATGATTCTTCCGAAATCACCATCTTCAAACCTGC
TAAATAGatgtacaatCAAAGTGCAGTGTCAATAAAGTCCAGTGCTTCAC
TGCTGTACAATAATCTAGATGTCCTTTCATCTGCATCTGGTCTTCAGTAT
GCAGTTGTTCACAAATCCAACGTTTGGGTGTTTGATGCAGAAGAAATACA
GACCAACCAAGCTGCATACAGAAGGGTTGTTTGTAAAGGAGAAGGCACAC
AAACAAGCTCCACCATCATGCAGGCCAAATGGTGTGTTTTACCACAGAGG
ACTCTTCTTGTTGTTGGTTCAGTCAAAGGTGCACAGATGTTTGATGAGAA
TGGGTCAATGATGATTTTCTGGCAAGCCTTACAGCCACATCCTAAAGAAG
GGAAACCACAGTTCGTCAGAGGAATTACTGCAGCTGGTGATAATCGAATA
TGTATTGgaACTGCGGATGGGAGTATTTATGTCTTCGATATTCCCTCAAA
AGGAAATGGTGTTAAACTACACGACACTATCAATGCACACACATGTGCAT
TGACAGATTTACATGCACTGGATGATTGTATGGTTTCAGCAGATGATATG
GGCAAAATCATTTTGTGGAAAGTTGGTGGAGCAGTCACCAAAACGCTCGA
AATTGAAGGTTTTGGATTTCCATGCACGAGCGTTCGACTGCACGAGAACT
TCATAATAGCAGCGTACGGTTCTGGACACCTTCGAAAGTTTAACTGCAAG
ACGGGAACAATAATCGTTGAAGTTGCAGCGCACGCTAAATGGATTAACGC
CATGGACCTTTCACAAGACGGAACACTGGTGGTGACAGCCTCAGAAGACA
CCTTCCTTAGACTTTTCGACGTCGAGACGTTCGAACTGAAGTTTCAGAAA
GCGATCACAGACGTTCAATTGACAGGTGTTCGTTTCATGGATGCGATCGA
CAACAGTTTCGGTGTCACCGGTTATGATTCTTCCGAAATCACCATCTTCA
AACCTGCTAAATAGatgtacaatCAAAGTGCAGTGTCAATAAAGTCCAGT
GCTTCACTGCTGTACAATAATCTAGATGTCCTTTCATCTGCATCTGGTCT
TCAGTATGCAGTTGTTCACAAATCCAACGTTTGGGTGTTTGATGCAGAAG
AAATACAGACCAACCAAGCTGCATACAGAAGGGTTGTTTGTAAAGGAGAA
GGCACACAAACAAGCTCCACCATCATGCAGGCCAAATGGTGTGTTTTACC
ACAGAGGACTCTTCTTGTTGTTGGTTCAGTCAAAGGTGCACAGATGTTTG
ATGAGAATGGGTCAATGATGATTTTCTGGCAAGCCTTACAGCCACATCCT
AAAGAAGGGAAACCACAGTTCGTCAGAGGAATTACTGCAGCTGGTGATAA
TCGAATATGTATTGgaACTGCGGATGGGAGTATTTATGTCTTCGATATTC
CCTCAAAAGGAAATGGTGTTAAACTACACGACACTATCAATGCACACACA
TGTGCATTGACAGATTTACATGCACTGGATGATTGTATGGTTTCAGCAGA
TGATATGGGCAAAATCATTTTGTGGAAAGTTGGTGGAGCAGTCACCAAAA
CGCTCGAAATTGAAGGTTTTGGATTTCCATGCACGAGCGTTCGACTGCAC
GAGAACTTCATAATAGCAGCGTACGGTTCTGGACACCTTCGAAAGTTTAA
CTGCAAGACGGGAACAATAATCGTTGAAGTTGCAGCGCACGCTAAATGGA
TTAACGCCATGGACCTTTCACAAGACGGAACACTGGTGGTGACAGCCTCA
GAAGACACCTTCCTTAGACTTTTCGACGTCGAGACGTTCGAACTGAAGTT
TCAGAAAGCGATCACAGACGTTCAATTGACAGGTGTTCGTTTCATGGATG
CGATCGACAACAGTTTCGGTGTCACCGGTTATGATTCTTCCGAAATCACC
ATCTTCAAACCTGCTAAATAGatgtacaatCAAAGTGCAGTGTCAATAAA
GTCCAGTGCTTCACTGCTGTACAATAATCTAGATGTCCTTTCATCTGCAT
CTGGTCTTCAGTATGCAGTTGTTCACAAATCCAACGTTTGGGTGTTTGAT
GCAGAAGAAATACAGACCAACCAAGCTGCATACAGAAGGGTTGTTTGTAA
AGGAGAAGGCACACAAACAAGCTCCACCATCATGCAGGCCAAATGGTGTG
TTTTACCACAGAGGACTCTTCTTGTTGTTGGTTCAGTCAAAGGTGCACAG
ATGTTTGATGAGAATGGGTCAATGATGATTTTCTGGCAAGCCTTACAGCC
ACATCCTAAAGAAGGGAAACCACAGTTCGTCAGAGGAATTACTGCAGCTG
GTGATAATCGAATATGTATTGgaACTGCGGATGGGAGTATTTATGTCTTC
GATATTCCCTCAAAAGGAAATGGTGTTAAACTACACGACACTATCAATGC
ACACACATGTGCATTGACAGATTTACATGCACTGGATGATTGTATGGTTT
CAGCAGATGATATGGGCAAAATCATTTTGTGGAAAGTTGGTGGAGCAGTC
ACCAAAACGCTCGAAATTGAAGGTTTTGGATTTCCATGCACGAGCGTTCG
ACTGCACGAGAACTTCATAATAGCAGCGTACGGTTCTGGACACCTTCGAA
AGTTTAACTGCAAGACGGGAACAATAATCGTTGAAGTTGCAGCGCACGCT
AAATGGATTAACGCCATGGACCTTTCACAAGACGGAACACTGGTGGTGAC
AGCCTCAGAAGACACCTTCCTTAGACTTTTCGACGTCGAGACGTTCGAAC
TGAAGTTTCAGAAAGCGATCACAGACGTTCAATTGACAGGTGTTCGTTTC
ATGGATGCGATCGACAACAGTTTCGGTGTCACCGGTTATGATTCTTCCGA
AATCACCATCTTCAAACCTGCTAAATAGatgtacaatCAAAGTGCAGTGT
CAATAAAGTCCAGTGCTTCACTGCTGTACAATAATCTAGATGTCCTTTCA
TCTGCATCTGGTCTTCAGTATGCAGTTGTTCACAAATCCAACGTTTGGGT
GTTTGATGCAGAAGAAATACAGACCAACCAAGCTGCATACAGAAGGGTTG
TTTGTAAAGGAGAAGGCACACAAACAAGCTCCACCATCATGCAGGCCAAA
TGGTGTGTTTTACCACAGAGGACTCTTCTTGTTGTTGGTTCAGTCAAAGG
TGCACAGATGTTTGATGAGAATGGGTCAATGATGATTTTCTGGCAAGCCT
TACAGCCACATCCTAAAGAAGGGAAACCACAGTTCGTCAGAGGAATTACT
GCAGCTGGTGATAATCGAATATGTATTGgaACTGCGGATGGGAGTATTTA
TGTCTTCGATATTCCCTCAAAAGGAAATGGTGTTAAACTACACGACACTA
TCAATGCACACACATGTGCATTGACAGATTTACATGCACTGGATGATTGT
ATGGTTTCAGCAGATGATATGGGCAAAATCATTTTGTGGAAAGTTGGTGG
AGCAGTCACCAAAACGCTCGAAATTGAAGGTTTTGGATTTCCATGCACGA
GCGTTCGACTGCACGAGAACTTCATAATAGCAGCGTACGGTTCTGGACAC
CTTCGAAAGTTTAACTGCAAGACGGGAACAATAATCGTTGAAGTTGCAGC
GCACGCTAAATGGATTAACGCCATGGACCTTTCACAAGACGGAACACTGG
TGGTGACAGCCTCAGAAGACACCTTCCTTAGACTTTTCGACGTCGAGACG
TTCGAACTGAAGTTTCAGAAAGCGATCACAGACGTTCAATTGACAGGTGT
TCGTTTCATGGATGCGATCGACAACAGTTTCGGTGTCACCGGTTATGATT
CTTCCGAAATCACCATCTTCAAACCTGCTAAATAGatgtacaatCAAAGT
GCAGTGTCAATAAAGTCCAGTGCTTCACTGCTGTACAATAATCTAGATGT
CCTTTCATCTGCATCTGGTCTTCAGTATGCAGTTGTTCACAAATCCAACG
TTTGGGTGTTTGATGCAGAAGAAATACAGACCAACCAAGCTGCATACAGA
AGGGTTGTTTGTAAAGGAGAAGGCACACAAACAAGCTCCACCATCATGCA
GGCCAAATGGTGTGTTTTACCACAGAGGACTCTTCTTGTTGTTGGTTCAG
TCAAAGGTGCACAGATGTTTGATGAGAATGGGTCAATGATGATTTTCTGG
CAAGCCTTACAGCCACATCCTAAAGAAGGGAAACCACAGTTCGTCAGAGG
AATTACTGCAGCTGGTGATAATCGAATATGTATTGgaACTGCGGATGGGA
GTATTTATGTCTTCGATATTCCCTCAAAAGGAAATGGTGTTAAACTACAC
GACACTATCAATGCACACACATGTGCATTGACAGATTTACATGCACTGGA
TGATTGTATGGTTTCAGCAGATGATATGGGCAAAATCATTTTGTGGAAAG
TTGGTGGAGCAGTCACCAAAACGCTCGAAATTGAAGGTTTTGGATTTCCA
TGCACGAGCGTTCGACTGCACGAGAACTTCATAATAGCAGCGTACGGTTC
TGGACACCTTCGAAAGTTTAACTGCAAGACGGGAACAATAATCGTTGAAG
TTGCAGCGCACGCTAAATGGATTAACGCCATGGACCTTTCACAAGACGGA
ACACTGGTGGTGACAGCCTCAGAAGACACCTTCCTTAGACTTTTCGACGT
CGAGACGTTCGAACTGAAGTTTCAGAAAGCGATCACAGACGTTCAATTGA
CAGGTGTTCGTTTCATGGATGCGATCGACAACAGTTTCGGTGTCACCGGT
TATGATTCTTCCGAAATCACCATCTTCAAACCTGCTAAATAGatgtacaa
tCAAAGTGCAGTGTCAATAAAGTCCAGTGCTTCACTGCTGTACAATAATC
TAGATGTCCTTTCATCTGCATCTGGTCTTCAGTATGCAGTTGTTCACAAA
TCCAACGTTTGGGTGTTTGATGCAGAAGAAATACAGACCAACCAAGCTGC
ATACAGAAGGGTTGTTTGTAAAGGAGAAGGCACACAAACAAGCTCCACCA
TCATGCAGGCCAAATGGTGTGTTTTACCACAGAGGACTCTTCTTGTTGTT
GGTTCAGTCAAAGGTGCACAGATGTTTGATGAGAATGGGTCAATGATGAT
TTTCTGGCAAGCCTTACAGCCACATCCTAAAGAAGGGAAACCACAGTTCG
TCAGAGGAATTACTGCAGCTGGTGATAATCGAATATGTATTGgaACTGCG
GATGGGAGTATTTATGTCTTCGATATTCCCTCAAAAGGAAATGGTGTTAA
ACTACACGACACTATCAATGCACACACATGTGCATTGACAGATTTACATG
CACTGGATGATTGTATGGTTTCAGCAGATGATATGGGCAAAATCATTTTG
TGGAAAGTTGGTGGAGCAGTCACCAAAACGCTCGAAATTGAAGGTTTTGG
ATTTCCATGCACGAGCGTTCGACTGCACGAGAACTTCATAATAGCAGCGT
ACGGTTCTGGACACCTTCGAAAGTTTAACTGCAAGACGGGAACAATAATC
GTTGAAGTTGCAGCGCACGCTAAATGGATTAACGCCATGGACCTTTCACA
AGACGGAACACTGGTGGTGACAGCCTCAGAAGACACCTTCCTTAGACTTT
TCGACGTCGAGACGTTCGAACTGAAGTTTCAGAAAGCGATCACAGACGTT
CAATTGACAGGTGTTCGTTTCATGGATGCGATCGACAACAGTTTCGGTGT
CACCGGTTATGATTCTTCCGAAATCACCATCTTCAAACCTGCTAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044938XLOC_044938Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072368-proteinTCONS_00072368-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072368-exon-scaffold_77-1491911889:339802..340121TCONS_00072368-exon-scaffold_77-1491911889:339802..340121Clytia hemisphaericaexon
TCONS_00072368-exon-scaffold_77-1510915933:339802..340121TCONS_00072368-exon-scaffold_77-1510915933:339802..340121Clytia hemisphaericaexon
TCONS_00072368-exon-scaffold_77-1575043694:339802..340121TCONS_00072368-exon-scaffold_77-1575043694:339802..340121Clytia hemisphaericaexon
TCONS_00072368-exon-scaffold_77-1491911889:340245..340307TCONS_00072368-exon-scaffold_77-1491911889:340245..340307Clytia hemisphaericaexon
TCONS_00072368-exon-scaffold_77-1510915933:340245..340307TCONS_00072368-exon-scaffold_77-1510915933:340245..340307Clytia hemisphaericaexon
TCONS_00072368-exon-scaffold_77-1575043694:340245..340307TCONS_00072368-exon-scaffold_77-1575043694:340245..340307Clytia hemisphaericaexon
TCONS_00072368-exon-scaffold_77-1491911889:340537..340657TCONS_00072368-exon-scaffold_77-1491911889:340537..340657Clytia hemisphaericaexon
TCONS_00072368-exon-scaffold_77-1510915933:340537..340657TCONS_00072368-exon-scaffold_77-1510915933:340537..340657Clytia hemisphaericaexon
TCONS_00072368-exon-scaffold_77-1575043694:340537..340657TCONS_00072368-exon-scaffold_77-1575043694:340537..340657Clytia hemisphaericaexon
TCONS_00072368-exon-scaffold_77-1491911889:340853..341060TCONS_00072368-exon-scaffold_77-1491911889:340853..341060Clytia hemisphaericaexon
TCONS_00072368-exon-scaffold_77-1510915933:340853..341060TCONS_00072368-exon-scaffold_77-1510915933:340853..341060Clytia hemisphaericaexon
TCONS_00072368-exon-scaffold_77-1575043694:340853..341060TCONS_00072368-exon-scaffold_77-1575043694:340853..341060Clytia hemisphaericaexon
TCONS_00072368-exon-scaffold_77-1491911889:341666..341828TCONS_00072368-exon-scaffold_77-1491911889:341666..341828Clytia hemisphaericaexon
TCONS_00072368-exon-scaffold_77-1510915933:341666..341828TCONS_00072368-exon-scaffold_77-1510915933:341666..341828Clytia hemisphaericaexon
TCONS_00072368-exon-scaffold_77-1575043694:341666..341828TCONS_00072368-exon-scaffold_77-1575043694:341666..341828Clytia hemisphaericaexon
TCONS_00072368-exon-scaffold_77-1491911889:343511..343561TCONS_00072368-exon-scaffold_77-1491911889:343511..343561Clytia hemisphaericaexon
TCONS_00072368-exon-scaffold_77-1510915933:343511..343561TCONS_00072368-exon-scaffold_77-1510915933:343511..343561Clytia hemisphaericaexon
TCONS_00072368-exon-scaffold_77-1575043694:343511..343561TCONS_00072368-exon-scaffold_77-1575043694:343511..343561Clytia hemisphaericaexon
TCONS_00072368-exon-scaffold_77-1491911889:343799..344735TCONS_00072368-exon-scaffold_77-1491911889:343799..344735Clytia hemisphaericaexon
TCONS_00072368-exon-scaffold_77-1510915933:343799..344735TCONS_00072368-exon-scaffold_77-1510915933:343799..344735Clytia hemisphaericaexon
TCONS_00072368-exon-scaffold_77-1575043694:343799..344735TCONS_00072368-exon-scaffold_77-1575043694:343799..344735Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_77supercontigscaffold_77:339802..344735 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.9667	16.2314	44.347	52.2492	66.906	51.7728	32.6235	33.8205	29.1553	27.1132	24.1001	21.9566	12.6678	12.0741	10.4868	13.097	22.2371	18.6663	8.29973	10.5462	17.545	16.7818	39.5714	34.5004	16.4431	19.094	16.3823	10.5467	28.4737	28.4523
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00072368 vs. Swiss-Prot (Human)
Match: WDR54 (WD repeat-containing protein 54 OS=Homo sapiens GN=WDR54 PE=1 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 4.191e-57
Identity = 121/332 (36.45%), Postives = 177/332 (53.31%), Query Frame = 3 
Query:  114 QSAVSIKSSASLLYNNLDVLS-SASGLQY-AVVHKSNVWVFDAEEIQTNQAAYRRVVCKGEGTQTSSTIMQAKWCVLPQRTLLVVGSVKGAQMFDENGSMMIFWQALQPHPKEGKPQ---FVRGITAAGDNRICIGTADGSIYVFDIPSKGNGVKLHDTINAHTCALTDLHAL----DDC---MVSADDMGKIILWKVGGAVTKTLEIEGFGFPCTSVRLHENFIIAAYGSGHLRKFNCKTGTIIVEVAAHAKWINAMDLSQDGTLVVTASEDTFLRLFDVET--------FELKFQKAITDVQLTGVRFMDAIDNSFGVTGYDSSEITIFK 1049
            + ++ ++ SA+ L NNL VL   A  L Y  VVH  +  +  A   +    A R++  K     +   I Q  WCVLP R LLV+ S +G QM++ NG  M++W AL     +  P    F RGI A+G + IC+GT  G + VFDIP+KG  + L + +  H   +TD+        DC   MV+ADD G + +W+ G   T    I GFG PC SV+L +  I A YG+G +  +   TG + V++ AHA+ I A+DL+ +   +++A EDTF+ ++ +           E    + + D QL G RF D+  NSF VTGYD +EI  F 
Sbjct:    5 ERSIPLRGSAAALCNNLSVLQLPARNLTYFGVVHGPSAQLLSAAP-EGVPLAQRQLHAKEGAGVSPPLITQVHWCVLPFRVLLVLTSHRGIQMYESNGYTMVYWHALDS--GDASPVQAVFARGIAASG-HFICVGTWSGRVLVFDIPAKGPNIVLSEELAGHQMPITDIATEPAQGQDCVADMVTADDSGLLCVWRSGPEFTLLTRIPGFGVPCPSVQLWQGIIAAGYGNGQVHLYEATTGNLHVQINAHARAICALDLASEVGKLLSAGEDTFVHIWKLSRNPESGYIEVEHCHGECVADTQLCGARFCDSSGNSFAVTGYDLAEIRRFS 332
The following BLAST results are available for this feature:
BLAST of TCONS_00072368 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR544.191e-5736.45WD repeat-containing protein 54 OS=Homo sapiens GN... [more]
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